RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
W

Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
TRIM28	4	-0.250	-0.030	-0.451	-1.012	0.467	-0.209	-0.279
TRIM28	4	-0.250	-0.030
TRIM9	3	-0.990	0.950
TRIM24	2	0.580	-0.300		-1.173	-0.067	-0.484	-0.364
TRIM32	1	0.220	0.640	-1.832			-0.176	-1.091
PML	1	-0.420	0.350		-0.244	0.322
TRIM4	1	2.400	-1.130	1.184	0.930	0.247	1.175	0.632
TRIM56	1	-1.850	3.500
TRIM33	1	-1.430	2.720	-0.662	-0.190	0.683	0.034	0.316
MID2	0	0.370	-0.940				-0.219	0.525
RNF31	0	0.100	0.480
MID1	0	0.310	-0.200				-0.219	0.525
TRIM14	0	0.130	0.600
TRIM37	0	0.060	0.540
TRIM2	0	0.110	0.320
TRIM23	0	-0.430	-0.320
TRIM21	0	-0.230	-0.010		-0.266	-0.252
TRIM47	0	0.610	-0.790
TRIM29	0	0.520	-0.280
TRIM65	0	-0.660	0.860
TRIM41	0	-0.410	0.630				0.316	-0.164
TRIM11	0	-1.020	0.650
TRIM44	0	-0.490	-0.080
TRIM13	0	1.450	-0.930

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
MID1	Ubiquitylation	K74	0.275	0.651	_GLDGLK(gl)R_
MID1	Phosphorylation	S96	-0.141	0.050	_ASVSGPNS(ph)PSETRR_
MID2	Ubiquitylation	K74	0.275	0.651	_GLDGLK(gl)R_
MID2	Phosphorylation	S96	-0.141	0.050	_ASVSGPNS(ph)PSETRR_
PML	Ubiquitylation	K394	0.515	0.360	_LQDLSSCITQGK(gl)DAAVSKK_
PML	Phosphorylation	S403		3.141	_KAS(ph)PEAASTPRDPIDVDLPEEAER_
PML	Ubiquitylation	K476	-0.403	-0.735	_GPSYGEDVSNTTTAQK(gl)R_
PML	Phosphorylation	S504	-0.198	-0.109	_S(ph)SPEQPRPSTSK_
PML	Phosphorylation	S505	-0.198	-0.109	_S(ph)SPEQPRPSTSK_
PML	Phosphorylation	S518	-1.632	-1.605	_AVS(ph)PPHLDGPPS(ph)PR_
PML	Phosphorylation	S527	-1.392	-1.605	_AVS(ph)PPHLDGPPS(ph)PR_
PML	Phosphorylation	S530	0.466	0.093	_S(ph)PVIGSEVFLPNSNHVASGAGEAEER_
PML	Ubiquitylation	K623		-0.784	_IDNETQK(gl)ISQLAAVNR_
RNF31	Phosphorylation	S466	-0.887	-0.631	_RLS(ph)APLPSSCGDPEK_
RNF31	Ubiquitylation	K783	-0.992	-0.032	_ESLEPDAYALFHK(gl)K_
RNF31	Ubiquitylation	K784	-0.992	-0.032	_ESLEPDAYALFHK(gl)K_
RNF31	Ubiquitylation	K848		-1.009	_SCEDFQNWK(gl)R_
TRIM11	Phosphorylation	S85	-0.760	-1.064	_LHPPS(ph)PVPQGVCPAHR_
TRIM11	Ubiquitylation	K141	-0.122		_LEK(gl)SLEHLRK_
TRIM11	Ubiquitylation	K258	-1.789	-1.720	_VQDVK(gl)LQPPEVVPMELR_
TRIM13	Ubiquitylation	K81		-0.953	_GIVEK(gl)YNK_
TRIM13	Ubiquitylation	K168		-0.117	_LDTLETSK(gl)R_
TRIM14	Ubiquitylation	K264		0.458	_SLLLK(gl)YAR_
TRIM2	Phosphorylation	S37	-0.298	0.216	_(ac)ASEGTNIPS(ph)PVVR_
TRIM2	Phosphorylation	S455	0.615	0.851	_SADVS(ph)PTTEGVK_
TRIM23	Ubiquitylation	K8		-1.906	_(ac)ATLVVNK(gl)LGAGVDSGR_
TRIM23	Ubiquitylation	K357		0.933	_VVLAK(gl)QEITR_
TRIM23	Ubiquitylation	K501		0.711	_LLTEK(gl)ELR_
TRIM24	Ubiquitylation	K303	0.293		_IIEVNQNQK(gl)QVEQDIK_
TRIM24	Ubiquitylation	K341	1.339		_MK(gl)LMQQQQEVAGLSK_
TRIM24	Phosphorylation	S660		-0.300	_TVQS(ph)PNSSVPSPGLAGPVTMTSVHPPIR_
TRIM24	Phosphorylation	S768		2.572	_SILTSLLLNSS(ph)QSSTSEETVLR_
TRIM24	Phosphorylation	S771	3.067		_SILTSLLLNSSQSS(ph)TSEETVLR_
TRIM24	Phosphorylation	S808		0.469	_SEWLDPS(ph)QKSPLHVGETR_
TRIM24	Phosphorylation	S811	0.564	0.219	_SEWLDPSQKS(ph)PLHVGETR_
TRIM24	Phosphorylation	S1042	2.366	1.350	_LKS(ph)IEER_
TRIM28	Phosphorylation	S4		-0.337	_(ac)AAS(ph)AAAASAAAASAASGSPGPGEGSAGGEK_
TRIM28	Phosphorylation	S14	-0.154		_(ac)AASAAAASAAAAS(ph)AASGSPGPGEGSAGGEK_
TRIM28	Phosphorylation	S17	-0.227	-0.026	_(ac)AASAAAASAAAASAAS(ph)GSPGPGEGSAGGEK_
TRIM28	Phosphorylation	S19	-0.068	-0.189	_(ac)AASAAAASAAAASAASGS(ph)PGPGEGSAGGEK_
TRIM28	Phosphorylation	S26		0.197	_(ac)AASAAAASAAAASAASGSPGPGEGS(ph)AGGEK_
TRIM28	Phosphorylation	S41		0.373	_RSTAPSAAAS(ph)ASASAAASSPAGGGAEALELLEHCGVCR_
TRIM28	Phosphorylation	S43	0.010		_RSTAPSAAASAS(ph)ASAAASSPAGGGAEALELLEHCGVCR_
TRIM28	Phosphorylation	S49	-0.388	-0.110	_STAPSAAASASASAAAS(ph)SPAGGGAEALELLEHCGVCR_
TRIM28	Phosphorylation	S50	-0.113	0.075	_RSTAPSAAASASASAAASS(ph)PAGGGAEALELLEHCGVCR_
TRIM28	Ubiquitylation	K254	0.323	0.381	_K(gl)LLASLVK_
TRIM28	Ubiquitylation	K261	1.520	0.923	_LLASLVK(gl)R_
TRIM28	Ubiquitylation	K266	0.465	-0.005	_LGDK(gl)HATLQK_
TRIM28	Ubiquitylation	K272	1.576	-0.085	_LGDKHATLQK(gl)STK_
TRIM28	Ubiquitylation	K319	0.332	0.451	_VLVNDAQK(gl)VTEGQQER_
TRIM28	Ubiquitylation	K337	0.976		_QHWTM(ox)TK(gl)IQK_
TRIM28	Ubiquitylation	K340	0.112	-0.105	_IQK(gl)HQEHILR_
TRIM28	Ubiquitylation	K407	-2.105		_SAEAFGK(gl)IVAERPGTNSTGPAPMAPPR_
TRIM28	Phosphorylation	S471	3.215	2.215	_S(ph)RSGEGEVSGLM(ox)R_
TRIM28	Phosphorylation	S473	3.049	2.476	_S(ph)GEGEVSGLMR_
TRIM28	Phosphorylation	S489	0.264	0.043	_VS(ph)LERLDLDLTADSQPPVFK_
TRIM28	Phosphorylation	T498		0.265	_VSLERLDLDLT(ph)ADSQPPVFK_
TRIM28	Phosphorylation	T541	3.001	1.292	_GAAAAATGQPGTAPAGT(ph)PGAPPLAGMAIVK_
TRIM28	Phosphorylation	S594		1.033	_LAS(ph)PSGSTSSGLEVVAPEGTSAPGGGPGTLDDSATICR_
TRIM28	Phosphorylation	S624		-1.117	_LASPSGSTSSGLEVVAPEGTSAPGGGPGTLDDS(ph)ATICR_
TRIM28	Phosphorylation	S681		1.735	_EEDGS(ph)LSLDGADSTGVVAK_
TRIM28	Phosphorylation	S752	0.314	0.567	_LQEKLS(ph)PPYSSPQEFAQDVGR_
TRIM28	Phosphorylation	S756	-0.408		_LSPPYS(ph)SPQEFAQDVGR_
TRIM28	Ubiquitylation	K770		0.289	_MFK(gl)QFNK_
TRIM28	Ubiquitylation	K779	0.334	2.706	_LTEDK(gl)ADVQSIIGLQR_
TRIM32	Ubiquitylation	K175	0.333	-0.305	_AALEGVSK(gl)DLQAR_
TRIM32	Ubiquitylation	K204		1.221	_K(gl)FFTGSLAEVEK_
TRIM32	Ubiquitylation	K405	2.753		_GFLK(gl)EIRR_
TRIM32	Ubiquitylation	K506	0.638		_GSGVVK(gl)YSCLCSAVRPK_
TRIM33	Ubiquitylation	K356	0.156		_IKEVNETNK(gl)R_
TRIM33	Ubiquitylation	K769	0.051		_TSLSFK(gl)SDQVK_
TRIM37	Ubiquitylation	K679	-0.977	-0.642	_LK(gl)TQMAEVR_
TRIM37	Ubiquitylation	K693	-1.498	-0.586	_TDVK(gl)NTLSEIK_
TRIM4	Ubiquitylation	K247	0.266	0.613	_LNQTIASLK(gl)K_
TRIM4	Ubiquitylation	K248		0.048	_LNQTIASLKK(gl)_
TRIM4	Ubiquitylation	K290		-0.993	_SEIQDVNYSLEAVKVK(gl)_
TRIM41	Ubiquitylation	K575		-0.052	_YQAQSSTEQTLLSPSEK(gl)PR_
TRIM44	Ubiquitylation	K265	0.656		_MFIQQEFKK(gl)_
TRIM44	Ubiquitylation	K268	0.466		_VQK(gl)VIADEEQK_
TRIM44	Ubiquitylation	K314	-0.266	-0.257	_LMTQMAQAK(gl)EQLDTSNESAEPK_
TRIM47	Ubiquitylation	K361		-0.078	_ELSFTK(gl)SSQAVR_
TRIM47	Phosphorylation	S588		1.046	_RGGIPAS(ph)PIDPFQSR_
TRIM56	Phosphorylation	S7		0.630	_(ac)VSHGSS(ph)PSLLEALSSDFLACK_
TRIM56	Phosphorylation	T442	-0.668	-0.416	_AQT(ph)PHEDGGPQPHR_
TRIM56	Phosphorylation	S475	-0.934	-0.955	_EPS(ph)PALGPNLDGSGLLPR_
TRIM65	Ubiquitylation	K206	-0.619	-0.156	_SIEVAK(gl)TQALAQAR_
TRIM9	Phosphorylation	T41	2.861	2.803	_NILVQT(ph)PESESPQSHR_
TRIM9	Phosphorylation	S46	-0.090	0.152	_NILVQTPESES(ph)PQSHR_
TRIM9	Phosphorylation	S49	-0.049		_NILVQTPESESPQS(ph)HR_
TRIM9	Ubiquitylation	K359		1.745	_DQISHCTVK(gl)LR_