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Query: TRIM56

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
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[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
TRIM56 1 3.462 -1.850 3.500

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
TRIM56 Phosphorylation S7 0.630 _(ac)VSHGSS(ph)PSLLEALSSDFLACK_
TRIM56 Phosphorylation T442 -0.668 -0.416 _AQT(ph)PHEDGGPQPHR_
TRIM56 Phosphorylation S475 -0.934 -0.955 _EPS(ph)PALGPNLDGSGLLPR_

Background Information for TRIM56:


Pubmed-TRIM56 »
Uniprot-TRIM56 »
Biogrid-TRIM56 »
ProteomicsDB-TRIM56 »

Tumorportal-TRIM56 »
COSMIC-TRIM56 »
GenomeRNAi-TRIM56 »
Genecards-TRIM56


Protein-protein Interactions for TRIM56
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait CCDC9 Cat. description Hein, Mann, Cell 2015
Category members IP bait CEP72 Cat. description Hein, Mann, Cell 2015
Category members IP bait ESPL1 Cat. description Hein, Mann, Cell 2015
Category members IP bait FAM60A Cat. description Hein, Mann, Cell 2015
Category members IP bait ING4 Cat. description Hein, Mann, Cell 2015
Category members IP bait MYH9 Cat. description Hein, Mann, Cell 2015
Category members IP bait SPC24 Cat. description Hein, Mann, Cell 2015
Category members IP bait USP43 Cat. description Hein, Mann, Cell 2015
Category members IP bait CNBP Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in TRIM56
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members Znf_B-box IPR000315 0
Category members Znf_RING IPR001841 0
Category members CheY-like_superfamily IPR011006 0
Category members Znf_C3HC4_RING-type IPR018957 0


Protein complexes (CORUM database) featuring TRIM56
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring TRIM56
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005829 cytosol Database INF
Category members GO Category GO:0005737 cytoplasm Database 12.81
Category members GO Category GO:0032481 positive regulation of type I interferon production Database 0.54
Category members GO Category GO:0005622 intracellular Database 0.32
Category members GO Category GO:0008270 zinc ion binding Database 0.29
Category members GO Category GO:0004842 ubiquitin-protein ligase activity Database 0.24
Category members GO Category GO:0051607 defense response to virus Database 0.07
Category members GO Category GO:0045087 innate immune response Database 0.05
Category members GO Category GO:0032479 regulation of type I interferon production Database 0.04
Category members GO Category GO:0032608 interferon-beta production Database 0
Category members GO Category GO:0034340 response to type I interferon Database 0
Category members GO Category GO:0046872 metal ion binding Database 0
Category members GO Category GO:0070534 protein K63-linked ubiquitination Database 0


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