RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
W

Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
ACOT7	2	-0.480	0.320				0.147	0.806
CACYBP	2	0.480	-0.310	1.995	0.414	0.588	0.866	-0.290
CASP8	1	1.120	-1.090
EZR	1	-0.240	-0.210		2.501	-2.209	0.246	0.091
TCP1	1	0.910	-0.350	-0.279	-0.943	-0.582	0.460	0.439
CCT7	1	-0.930	1.460
CCT7	1	-0.930	1.460	-0.370	-0.710	-0.502
CXADR	1	-0.550	1.230				0.333	1.691
CCT3	1	-0.440	0.600	-0.440	-0.698	-0.560	-0.040	-0.114
CCT2	1	-1.960	4.690	-0.103	-0.462	-0.504	0.251	0.451
USP33	0	0.750	-0.150
MAP2	0	0.430	-0.730
GNB1	0	-0.700	0.650	0.713			0.504	0.538
GNB3	0	-1.020	1.280	0.713			0.504	0.538
DPYSL3	0	0.400	-0.420	-0.511
CCT4	0	0.170	-0.060		-0.745	-0.586	0.025	0.190
CCT4	0	0.170	-0.060	-0.246
PODXL	0	-0.240	0.250				0.450	-0.055
GFAP	0	0.930	-0.340				0.523	-5.250
CCT6A	0	0.330	-0.060	-0.116	-0.788	-0.510	0.477	0.245
CCT6A	0	0.330	-0.060
CCT5	0	0.340	-0.350	-0.024	-0.479	-0.463	0.276	0.342
CCT8	0	0.440	0.010	-0.129	-0.611	-0.510	0.526	0.536
APOA1BP	0	-0.490	0.550
PTPN13	0	0.510	-0.610				0.549	0.504
NDEL1	0	0.150	-0.130
GABARAP	0	-1.090	2.300
GNB2	0	0.120	-0.090	0.137			0.627	1.296
ATP6AP2	0	-0.880	1.100				-0.462	-0.359

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ACOT7	Ubiquitylation	K198	2.222	0.173	_YEAQK(gl)LER_
ACOT7	Ubiquitylation	K286	1.931		_K(gl)GCVITISGR_
ACOT7	Ubiquitylation	K371	4.396	4.214	_YLQMKAK(gl)_
APOA1BP	Ubiquitylation	K288		-0.764	_FVPPALEK(gl)K_
APOA1BP	Ubiquitylation	K289	-1.396	-0.764	_FVPPALEKK(gl)_
ATP6AP2	Ubiquitylation	K284		0.459	_TILEAK(gl)QAK_
ATP6AP2	Ubiquitylation	K346		-0.181	_MTNQK(gl)IR_
CACYBP	Phosphorylation	S3	1.210	1.073	_(ac)AS(ph)EELQKDLEEVK_
CACYBP	Ubiquitylation	K19	0.761	0.125	_VLLEK(gl)ATR_
CACYBP	Ubiquitylation	K33	5.154		_VRDALTAEK(gl)SK_
CACYBP	Ubiquitylation	K41	0.333		_SKIETEIK(gl)NK_
CACYBP	Ubiquitylation	K43	0.550		_SKIETEIK(gl)NK_
CACYBP	Ubiquitylation	K51	-0.494		_K(gl)AELLDNEKPAAVVAPITTGYTVK_
CACYBP	Ubiquitylation	K146	0.061	-0.044	_VK(gl)TDTVLILCR_
CACYBP	Ubiquitylation	K196		-0.454	_EKPSYDTETDPSEGLMNVLK(gl)K_
CACYBP	Ubiquitylation	K197		-0.454	_EKPSYDTETDPSEGLMNVLK(gl)K_
CACYBP	Ubiquitylation	K207	0.581		_IYEDGDDDMK(gl)R_
CACYBP	Ubiquitylation	K212	0.244	0.832	_TINK(gl)AWVESR_
CACYBP	Ubiquitylation	K223	0.413		_EKQAK(gl)GDTEF_
CASP8	Ubiquitylation	K183	1.917		_IINDYEEFSK(gl)ER_
CASP8	Ubiquitylation	K461		-2.031	_NMGK(gl)QMPQPTFTLR_
CCT2	Ubiquitylation	K13	-0.609		_(ac)ASLSLAPVNIFK(gl)AGADEERAETAR_
CCT2	Ubiquitylation	K46		0.429	_STLGPK(gl)GMDK_
CCT2	Ubiquitylation	K50	-0.136		_GMDK(gl)ILLSSGR_
CCT2	Ubiquitylation	K82	-0.230	0.384	_NIGVDNPAAK(gl)VLVDMSR_
CCT2	Ubiquitylation	K120	0.281	0.305	_EAESLIAKK(gl)_
CCT2	Ubiquitylation	K154	0.317	0.803	_EALLSSAVDHGSDEVK(gl)FR_
CCT2	Ubiquitylation	K248	0.491	0.333	_ILIANTGMDTDK(gl)IK_
CCT2	Ubiquitylation	K284	0.170		_ILK(gl)HGINCFINR_
CCT2	Ubiquitylation	K431	-0.401		_TPGK(gl)EAVAMESYAK_
CCT2	Ubiquitylation	K441	0.095	-0.071	_EAVAM(ox)ESYAK(gl)ALR_
CCT2	Ubiquitylation	K522	0.245	0.094	_VDNIIK(gl)AAPR_
CCT3	Ubiquitylation	K47	-0.257	-0.017	_(ac)MMGHRPVLVLSQNTK(gl)R_
CCT3	Ubiquitylation	K53		0.139	_K(gl)VQSGNINAAK_
CCT3	Ubiquitylation	K76	-0.108	0.263	_TCLGPK(gl)SMMK_
CCT3	Ubiquitylation	K110	-1.269	-0.318	_EIQVQHPAAK(gl)SMIEISR_
CCT3	Ubiquitylation	K170		0.828	_ALDDMISTLK(gl)K_
CCT3	Ubiquitylation	K171		0.828	_ALDDMISTLK(gl)K_
CCT3	Ubiquitylation	K254	-0.399	0.229	_GVMINK(gl)DVTHPR_
CCT3	Ubiquitylation	K281	-0.289		_K(gl)GESQTDIEITREEDFTR_
CCT3	Phosphorylation	S284	0.252	1.757	_KGES(ph)QTDIEITR_
CCT3	Ubiquitylation	K413	0.089	0.018	_GASK(gl)EILSEVER_
CCT3	Ubiquitylation	K459	-0.570	-0.290	_SK(gl)AMTGVEQWPYR_
CCT3	Ubiquitylation	K539	0.817	0.868	_LQTYK(gl)TAVETAVLLLR_
CCT3	Ubiquitylation	K559		0.150	_IDDIVSGHK(gl)K_
CCT3	Ubiquitylation	K560	0.911	0.233	_IDDIVSGHKK(gl)_
CCT4	Ubiquitylation	K42		-0.386	_FSNISAAK(gl)AVADAIR_
CCT4	Ubiquitylation	K55	0.262	0.410	_TSLGPK(gl)GMDK_
CCT4	Ubiquitylation	K65	-0.085	0.273	_MIQDGK(gl)GDVTITNDGATILK_
CCT4	Ubiquitylation	K126	-0.473		_LLQK(gl)GIHPTIISESFQK_
CCT4	Ubiquitylation	K291	0.366		_AYILNLVKQIK(gl)_
CCT4	Ubiquitylation	K292	-0.083		_K(gl)TGCNVLLIQK_
CCT4	Ubiquitylation	K375		-0.019	_LLK(gl)ITGCASPGK_
CCT4	Ubiquitylation	K395		0.067	_GSNK(gl)LVIEEAER_
CCT4	Ubiquitylation	K489	-0.142		_HAQGEK(gl)TAGINVR_
CCT4	Ubiquitylation	K531	0.360		_SILK(gl)IDDVVNTR_
CCT5	Ubiquitylation	K42		-0.197	_SHIMAAK(gl)AVANTMR_
CCT5	Ubiquitylation	K176	0.077	-0.089	_TTLGSK(gl)VVNSCHR_
CCT5	Ubiquitylation	K223	0.209	-0.071	_LEDTK(gl)LIK_
CCT5	Ubiquitylation	K265	0.295		_HK(gl)LDVTSVEDYK_
CCT5	Ubiquitylation	K275	0.003	-0.937	_LDVTSVEDYK(gl)ALQK_
CCT5	Ubiquitylation	K279		-0.233	_ALQK(gl)YEK_
CCT5	Ubiquitylation	K370		0.104	_DK(gl)MLVIEQCK_
CCT5	Ubiquitylation	K378	0.652	-0.023	_MLVIEQCK(gl)NSR_
CCT5	Ubiquitylation	K392		-0.223	_GGNK(gl)M(ox)IIEEAK(gl)R_
CCT5	Ubiquitylation	K399	0.453	-0.110	_M(ox)IIEEAK(gl)R_
CCT5	Ubiquitylation	K483	-0.464	-0.608	_QVK(gl)EMNPALGIDCLHK_
CCT5	Ubiquitylation	K496		-0.925	_EMNPALGIDCLHK(gl)GTNDMK_
CCT5	Ubiquitylation	K514	0.076	0.212	_K(gl)QQISLATQMVR_
CCT5	Ubiquitylation	K529	-0.016	-0.280	_MILK(gl)IDDIR_
CCT5	Ubiquitylation	K535	-0.002	-0.302	_IDDIRK(gl)PGESEE_
CCT6A	Ubiquitylation	K5	-0.911	-0.385	_(ac)AAVK(gl)TLNPK(gl)AEVAR_
CCT6A	Ubiquitylation	K10	-0.519	1.185	_TLNPK(gl)AEVAR_
CCT6A	Ubiquitylation	K41	-0.001	0.417	_TNLGPK(gl)GTMK_
CCT6A	Ubiquitylation	K127	0.601	0.073	_IITEGFEAAK(gl)EK_
CCT6A	Ubiquitylation	K129	0.572	0.697	_EK(gl)ALQFLEEVK_
CCT6A	Ubiquitylation	K199	-0.073		_HK(gl)SETDTSLIR_
CCT6A	Ubiquitylation	K280	0.578		_K(gl)VCGDSDKGFVVINQK_
CCT6A	Ubiquitylation	K365	-0.522	-0.685	_FTFIEK(gl)CNNPR_
CCT6A	Ubiquitylation	K377	0.067	0.134	_SVTLLIK(gl)GPNK_
CCT6A	Ubiquitylation	K381	0.062		_GPNK(gl)HTLTQIK_
CCT6A	Ubiquitylation	K530	-0.356	0.874	_AGMSSLK(gl)G_
CCT7	Ubiquitylation	K3	-0.028		_DK(gl)LIVDGR_
CCT7	Ubiquitylation	K47	-0.134	0.102	_GMDK(gl)LIVDGR_
CCT7	Ubiquitylation	K55	0.132	0.539	_GK(gl)ATISNDGATILK_
CCT7	Ubiquitylation	K93	0.705	0.445	_TATQLAVNKIK(gl)_
CCT7	Ubiquitylation	K135		-0.024	_TATQLAVNK(gl)IK_
CCT7	Ubiquitylation	K137	0.751	0.445	_IK(gl)EIAVTVK_
CCT7	Ubiquitylation	K144	-0.296	-0.470	_IKEIAVTVK(gl)K_
CCT7	Ubiquitylation	K145	-0.578	-0.520	_EIAVTVKK(gl)_
CCT7	Ubiquitylation	K166	-0.249		_CAMTALSSK(gl)LISQQK_
CCT7	Ubiquitylation	K172	-0.992	0.276	_LISQQK(gl)AFFAK_
CCT7	Ubiquitylation	K218		-0.512	_K(gl)TFSYAGFEMQPK_
CCT7	Ubiquitylation	K231	3.208		_TFSYAGFEMQPKK(gl)_
CCT7	Ubiquitylation	K320	-0.528	-0.410	_VPEEDLK(gl)R_
CCT7	Ubiquitylation	K366	-0.687	-0.358	_YNFFTGCPK(gl)AK_
CCT7	Ubiquitylation	K368	1.686	1.109	_AK(gl)TCTFILR_
CCT7	Ubiquitylation	K430	-1.102	-1.136	_TIPGK(gl)QQLLIGAYAK_
CCT7	Ubiquitylation	K463	-0.247	0.130	_QLCDNAGFDATNILNK(gl)LR_
CCT8	Ubiquitylation	K7	-0.282	-0.604	_(ac)ALHVPK(gl)APGFAQMLK_
CCT8	Ubiquitylation	K16	-0.003	-0.077	_APGFAQM(ox)LK(gl)EGAK_
CCT8	Ubiquitylation	K20	0.278	0.511	_EGAK(gl)HFSGLEEAVYR_
CCT8	Ubiquitylation	K37	0.439	0.860	_NIQACK(gl)ELAQTTR_
CCT8	Ubiquitylation	K152	-0.270		_AHEILPNLVCCSAK(gl)NLR_
CCT8	Ubiquitylation	K171		1.213	_TSIMSK(gl)QYGNEVFLAK_
CCT8	Ubiquitylation	K235	0.538	1.082	_ETEGDVTSVK(gl)DAK_
CCT8	Ubiquitylation	K238		0.548	_ETEGDVTSVK(gl)DAK_
CCT8	Ubiquitylation	K260	0.152		_GTVLIK(gl)TAEELMNFSK_
CCT8	Ubiquitylation	K270	0.187		_TAEELMNFSK(gl)GEENLMDAQVK_
CCT8	Ubiquitylation	K318	-0.421	1.097	_LNSK(gl)WDLRR_
CCT8	Ubiquitylation	K326	0.065	0.098	_RLCK(gl)TVGATALPR_
CCT8	Ubiquitylation	K400	0.364	0.867	_AVDDGVNTFK(gl)VLTR_
CCT8	Ubiquitylation	K440	-0.342		_K(gl)FAEAFEAIPR_
CCT8	Ubiquitylation	K459	-0.052	0.061	_ALAENSGVK(gl)ANEVISK_
CCT8	Ubiquitylation	K466	0.068		_ANEVISK(gl)LYAVHQEGNK_
CCT8	Ubiquitylation	K528	-1.602		_VDQIIMAK(gl)PAGGPKPPSGK_
CCT8	Ubiquitylation	K534	-2.257		_VDQIIMAKPAGGPK(gl)PPSGK_
CCT8	Phosphorylation	S537	-1.069	-1.022	_PAGGPKPPS(ph)GK_
CCT8	Ubiquitylation	K540	-1.770		_PAGGPKPPSGKK(gl)_
CXADR	Phosphorylation	S332	-0.817	-0.804	_TPQS(ph)PTLPPAK_
DPYSL3	Phosphorylation	S102	-1.104	-0.731	_EESREPAPAS(ph)PAPAGVEIR_
DPYSL3	Phosphorylation	T622	-0.228		_GM(ox)YDGPVFDLTT(ph)TPK_
DPYSL3	Phosphorylation	T623	-0.604	-0.464	_GM(ox)YDGPVFDLTTT(ph)PK_
DPYSL3	Phosphorylation	S636	-0.777	-0.696	_GS(ph)PTRPNPPVR_
EZR	Ubiquitylation	K3	-0.313	-0.251	_PK(gl)PINVR_
EZR	Ubiquitylation	K79	0.172	-0.032	_ENPLQFK(gl)FR_
EZR	Ubiquitylation	K139	1.519	0.361	_FGDYNK(gl)EVHK_
EZR	Ubiquitylation	K162	1.580	0.660	_VMDQHK(gl)LTR_
EZR	Ubiquitylation	K253	-0.069		_NISFNDK(gl)K_
EZR	Ubiquitylation	K263	-0.786		_K(gl)APDFVFYAPR_
EZR	Ubiquitylation	K344	0.598	0.235	_EK(gl)EELMLR_
EZR	Ubiquitylation	K357	-0.003		_LQDYEEK(gl)TK_
EZR	Ubiquitylation	K359	0.051		_LQDYEEK(gl)TK_
EZR	Ubiquitylation	K450	0.393	0.174	_AK(gl)EAQDDLVK_
GABARAP	Ubiquitylation	K13	-0.569		_FVYKEEHPFEK(gl)R_
GNB1	Ubiquitylation	K23	-0.282		_K(gl)ACADATLSQITNNIDPVGR_
GNB1	Ubiquitylation	K209	-0.296	-0.249	_LFVSGACDASAK(gl)LWDVR_
GNB2	Ubiquitylation	K23	-0.095	0.033	_K(gl)ACGDSTLTQITAGLDPVGR_
GNB2	Ubiquitylation	K209	0.251	0.419	_TFVSGACDASIK(gl)LWDVR_
GNB3	Ubiquitylation	K23	-0.282		_K(gl)ACADATLSQITNNIDPVGR_
GNB3	Ubiquitylation	K209	-0.296	-0.249	_LFVSGACDASAK(gl)LWDVR_
MAP2	Phosphorylation	S1534		0.156	_VSDGVTKS(ph)PEKR_
MAP2	Phosphorylation	S1782	0.116	0.529	_VDHGAEIITQS(ph)PGR_
NDEL1	Phosphorylation	S249		-0.120	_S(ph)APSS(ph)PTLDCEK_
NDEL1	Phosphorylation	S253		-0.120	_S(ph)APSS(ph)PTLDCEK_
PODXL	Phosphorylation	S531		0.428	_VVS(ph)LNGELGDSWIVPLDNLTKDDLDEEEDTHL_
PTPN13	Phosphorylation	S345	0.424	0.250	_YS(ph)DGSIALDIFGPQK_
PTPN13	Phosphorylation	S890	0.482	-0.006	_S(ph)LNLQAESVR_
PTPN13	Phosphorylation	S908	0.526	0.303	_AIS(ph)TGSLASSTLNK_
PTPN13	Phosphorylation	S936	0.498	0.321	_RLS(ph)CSELSLYQPLQNSSK_
PTPN13	Phosphorylation	S938	0.489	0.032	_LSCS(ph)ELSLYQPLQNSSK_
PTPN13	Phosphorylation	S1029	0.693	0.332	_SVAS(ph)LNRSPER_
PTPN13	Phosphorylation	S1033	0.266	0.445	_SVASLNRS(ph)PERR_
PTPN13	Phosphorylation	S1358	-0.423	-0.259	_TFSS(ph)SPPKPGDIFEVELAK_
PTPN13	Phosphorylation	S1359	-0.207	-0.067	_TFSSS(ph)PPKPGDIFEVELAK_
PTPN13	Phosphorylation	S1629	0.646	0.399	_DSSQPSCVEQSTS(ph)SDENEMSDK_
PTPN13	Phosphorylation	S1630	0.306	0.272	_DSSQPSCVEQSTSS(ph)DENEM(ox)SDK_
PTPN13	Phosphorylation	S2032	-0.758	-0.522	_GS(ph)PNLTLPK_
PTPN13	Phosphorylation	S2107		0.703	_TEDTDCDGS(ph)PLPEYFTEATK_
TCP1	Ubiquitylation	K109	-0.135	0.674	_NADELVK(gl)QK_
TCP1	Ubiquitylation	K126	-0.013	0.696	_LACK(gl)EAVR_
TCP1	Ubiquitylation	K153		1.172	_DCLINAAK(gl)TSMSSK_
TCP1	Ubiquitylation	K365	2.257		_ICDDELILIK(gl)NTK_
TCP1	Ubiquitylation	K400	0.670	0.460	_SLHDALCVVK(gl)R_
TCP1	Ubiquitylation	K532	-0.204	-0.345	_IDDLIK(gl)LHPESK_
TCP1	Phosphorylation	S544	0.593	0.207	_HGS(ph)YEDAVHSGALND_
USP33	Ubiquitylation	K371		-0.567	_MCNK(gl)INK_
USP33	Ubiquitylation	K882	-0.583	0.278	_IAVTK(gl)CGNVMLR_