RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
AARS	2	-0.590	1.990					1.091
AARS	2	-0.590	1.990	0.992
DUS3L	1	-1.940	3.080
TXNRD2	1	2.400	-0.860
SARS	0	0.490	-0.890	0.668			0.472	0.629
TRIT1	0	-0.560	0.070
KARS	0	-1.130	1.650	0.084	-0.672	-0.378	0.796	0.367
TRMT11	0	-0.350	0.360
TRMT6	0	0.380	0.080				-0.535	-1.235
PUS7	0	0.580	-0.500
PUS7	0	0.580	-0.500
DLD	0	-0.420	0.270	1.380	0.780	-1.052	0.824	0.231
OSGEP	0	-0.780	1.810
TRMU	0	-0.860	0.730
KIAA0391	0	0.260	-0.750				0.526	0.824
TRMT1	0	-0.640	0.800				-1.192
TRMT1	0	-0.640	0.800	-0.296
POP4	0	0.080	-0.120
FBL	0	-0.770	0.790	-0.287	0.982	0.086
TRMT1L	0	1.210	-0.540		-1.420	-0.095		-1.436
TRMT13	0	0.630	-0.410
RPP40	0	-0.150	0.100					0.015
GRSF1	0	1.010	-0.710	0.775	0.625	-0.778	-0.386	-0.048
MTO1	0	-0.740	1.010
CDKAL1	0	0.070	0.220				0.046	0.108
RPP30	0	1.460	-0.730	-0.240			-1.224	-0.567
RPP38	0	-1.220	1.780
TYW3	0	0.090	-0.150
GMPS	0	-0.740	0.600	-0.533	-0.030	0.022	-0.466	-0.160
KDM1B	0	-0.070	0.170				0.000	0.091
TRUB1	0	0.570	-0.800
DUS2	0	-0.830	1.180
LCMT2	0	-1.220	1.190
PUSL1	0	1.180	-0.830		0.010	0.148
TP53RK	0			1.015
POP7	0	1.110	-0.440				-0.957
TRMT10C	0	0.620	-0.620	1.396	-0.084	-0.311	0.274	0.484
CTU2	0	-0.680	0.850
PUS1	0	-0.270	0.970	0.513			0.510	1.078
LAGE3	0	-1.050	1.740
TXNRD1	0	-0.400	-0.200
TYW1	0	0.400	-0.200
QTRT1	0	0.730	-0.410

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
AARS	Ubiquitylation	K338		0.835	_YAHEK(gl)LNASR_
AARS	Phosphorylation	S563	0.468	0.212	_VDDSS(ph)EDKTEFTVK_
AARS	Ubiquitylation	K625	-0.494	-0.399	_SVLGEADQK(gl)GSLVAPDR_
AARS	Ubiquitylation	K650	0.052	0.332	_GAMSTQQIK(gl)K_
AARS	Ubiquitylation	K677		0.025	_AVYTQDCPLAAAK(gl)AIQGLR_
AARS	Ubiquitylation	K762	-0.271	0.079	_IVAVTGAEAQK(gl)ALR_
AARS	Ubiquitylation	K820	2.550	4.438	_DELRETLK(gl)SLK_
CDKAL1	Phosphorylation	S3		1.102	_PS(ph)ASCDTLLDDIEDIVSQEDSKPQDR_
CDKAL1	Phosphorylation	S5		0.811	_PSAS(ph)CDTLLDDIEDIVSQEDSKPQDR_
CDKAL1	Ubiquitylation	K343		0.633	_EYCVADFK(gl)R_
CDKAL1	Ubiquitylation	K496		-1.923	_GQPVSDAK(gl)VYTPSISKPLAK_
CDKAL1	Ubiquitylation	K516	0.544	0.286	_GEVSGLTK(gl)DFR_
CTU2	Phosphorylation	S490	-0.609	0.074	_LSQMQS(ph)PIPLTETR_
DUS2	Ubiquitylation	K337		-1.649	_LSAK(gl)TSEQTGEPAEDTSGVIK_
DUS3L	Ubiquitylation	K154		-1.179	_YLETK(gl)PADLGPR_
DUS3L	Phosphorylation	T273	-0.916	-0.748	_QENCGAQQVPAGPGTST(ph)PPSS(ph)PVR_
DUS3L	Phosphorylation	S276	-0.789	-0.747	_QENCGAQQVPAGPGTST(ph)PPS(ph)SPVR_
DUS3L	Phosphorylation	S277	-0.727	-0.748	_QENCGAQQVPAGPGTST(ph)PPSS(ph)PVR_
DUS3L	Ubiquitylation	K416		-0.556	_STK(gl)FQQIVR_
FBL	Ubiquitylation	K102	0.737	-0.350	_GK(gl)EDALVTK_
FBL	Ubiquitylation	K109	-0.532	-1.093	_GKEDALVTK(gl)NLVPGESVYGEKR_
FBL	Ubiquitylation	K121	-0.496	-1.255	_NLVPGESVYGEK(gl)R_
FBL	Phosphorylation	S124	0.477	0.584	_RVS(ph)ISEGDDKIEYR_
FBL	Ubiquitylation	K131		-0.792	_VSISEGDDK(gl)IEYR_
FBL	Ubiquitylation	K205	0.098	-0.320	_DLINLAK(gl)K(gl)R_
FBL	Ubiquitylation	K206	0.127	-0.846	_DLINLAK(gl)K(gl)R_
FBL	Ubiquitylation	K284		-1.007	_ANCIDSTASAEAVFASEVK(gl)K_
FBL	Ubiquitylation	K285	0.533	-0.772	_ANCIDSTASAEAVFASEVKK(gl)_
FBL	Ubiquitylation	K292		-1.714	_MQQENM(ox)K(gl)PQEQLTLEPYER_
GMPS	Ubiquitylation	K120	0.343		_VFGGTVHK(gl)K_
GMPS	Ubiquitylation	K121	0.457		_VFGGTVHKK(gl)_
GMPS	Ubiquitylation	K165	1.104		_VADGFK(gl)VVAR_
GMPS	Ubiquitylation	K182	0.575	0.078	_SGNIVAGIANESK(gl)K_
GMPS	Ubiquitylation	K183	0.652	0.078	_SGNIVAGIANESKK(gl)_
GMPS	Ubiquitylation	K288	0.285		_ESQSVEEALK(gl)K_
GMPS	Ubiquitylation	K289	-0.344	0.223	_K(gl)LGIQVK_
GMPS	Phosphorylation	T330	-0.017		_TLNM(ox)T(ph)TSPEEK_
GMPS	Phosphorylation	T331	0.917		_TLNMTT(ph)SPEEK_
GMPS	Phosphorylation	S332	0.573	0.448	_TLNMTTS(ph)PEEK_
GMPS	Ubiquitylation	K457	-0.834		_VICAEEPYICK(gl)DFPETNNILK_
GRSF1	Ubiquitylation	K242	0.232	-0.120	_SLQVK(gl)SSPVVNDGVVR_
KDM1B	Phosphorylation	S13	0.489	-0.073	_KAS(ph)FDHSPDSLPLR_
KDM1B	Phosphorylation	S247	0.805	0.797	_AAATGNAS(ph)PGKLEHSK_
LAGE3	Ubiquitylation	K95	-0.505	0.580	_VVGK(gl)DLTVSGR_
LCMT2	Ubiquitylation	K24	-0.365	-0.995	_RAGAVQNTNDSSALSK(gl)R_
LCMT2	Ubiquitylation	K356	-2.533	-2.594	_VNPASPSGVFPASVVSSEGQVPNLK(gl)R_
MTO1	Ubiquitylation	K321		-1.041	_YCPSIESK(gl)VLR_
OSGEP	Ubiquitylation	K23	-0.145	-0.388	_DGK(gl)VLANPR_
POP4	Ubiquitylation	K90		-0.471	_LFDIK(gl)PEQQR_
POP4	Ubiquitylation	K144		-0.296	_ADLHGAIISVTK(gl)SK_
POP4	Ubiquitylation	K215	-0.295	-0.894	_AK(gl)GTIDL_
POP7	Ubiquitylation	K46	0.328	-0.077	_TDFK(gl)AQLAR_
POP7	Ubiquitylation	K54	-0.264	-0.481	_CQK(gl)LLDGGAR_
PUS7	Ubiquitylation	K240	0.508		_YIVAYHAAGKK(gl)_
PUS7	Phosphorylation	T610	0.092	0.372	_IPLFNTDVDNLEGKT(ph)PPVFASEGK_
PUSL1	Ubiquitylation	K266		-1.120	_TILESQDPLGK(gl)HQTR_
QTRT1	Ubiquitylation	K219		-0.378	_ATCLEEMTK(gl)R_
QTRT1	Ubiquitylation	K367		-0.241	_TSIVEK(gl)R_
RPP30	Ubiquitylation	K16	0.342	0.055	_AGSDLK(gl)ALR_
RPP30	Phosphorylation	S251	0.239	0.016	_KPRPS(ph)EGDEDCLPASK_
RPP38	Phosphorylation	S12	0.381	0.344	_(ac)AAAPQAPGRGS(ph)LRK_
RPP38	Phosphorylation	S235	-0.307		_ELLDTS(ph)FEDLSKPK_
SARS	Ubiquitylation	K55	0.783		_FRADNLNK(gl)LK_
SARS	Ubiquitylation	K62	0.268	0.384	_NLCSK(gl)TIGEK_
SARS	Ubiquitylation	K116	0.384	0.556	_LLIDEAILK(gl)CDAER_
TP53RK	Phosphorylation	T7	-0.376		_AT(ph)TPADGEEPAPEAEALAAAR_
TP53RK	Phosphorylation	T8	0.572	-0.177	_ATT(ph)PADGEEPAPEAEALAAAR_
TRIT1	Ubiquitylation	K391		-0.726	_MPYNEAENK(gl)R_
TRIT1	Phosphorylation	S443	0.119	0.431	_RLDSDAVNTIESQSVS(ph)PDHNKEPK_
TRMT1	Ubiquitylation	K283	0.868	0.731	_YGAMALK(gl)SR_
TRMT1	Ubiquitylation	K483	-0.399		_VSLSHACK(gl)NAVK_
TRMT1	Phosphorylation	S623	-0.536		_GDQCCYS(ph)HSPPTPR_
TRMT1	Phosphorylation	S625	-0.651	-0.411	_GDQCCYSHS(ph)PPTPR_
TRMT11	Ubiquitylation	K189		-1.145	_ELIESYSVK(gl)K_
TRMT11	Ubiquitylation	K190		-1.145	_ELIESYSVK(gl)K_
TRMT13	Phosphorylation	T6	-0.627		_(ac)ATSAT(ph)SPHAPGFPAEGR_
TRMT13	Phosphorylation	S7	-0.437	-0.079	_(ac)ATSATS(ph)PHAPGFPAEGR_
TRMT1L	Phosphorylation	S66	-3.763		_DSAGVPAPAPDSALDSAPTPASAPAPAPALAQAPALS(ph)PSLASAPEEAK_
TRMU	Ubiquitylation	K395		-1.764	_LGPSAYTLQK(gl)GQR_
TRUB1	Phosphorylation	S10	0.605		_(ac)AASEAAVVS(ph)SPSLK_
TRUB1	Phosphorylation	S11	0.641	0.402	_(ac)AASEAAVVSS(ph)PSLK_
TRUB1	Phosphorylation	T16	0.684	1.324	_T(ph)DTSPVLETAGTVAAM(ox)AATPSAR_
TRUB1	Ubiquitylation	K147	0.106	-1.601	_MLTSMLSGSK(gl)R_
TXNRD1	Ubiquitylation	K580	-0.043	-0.178	_IICNTK(gl)DNER_
TXNRD2	Ubiquitylation	K151		0.253	_VQLQDRK(gl)_
TYW1	Ubiquitylation	K52		-0.508	_NLQEK(gl)SVPK_
TYW3	Ubiquitylation	K17		-0.078	_AQCLSK(gl)ADLSR_