bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

bioLOGIC Data


Exact search


Query: KDM1B

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
KDM1B 0 1.863 -0.070 0.170 0.000 0.091

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
KDM1B Phosphorylation S247 0.805 0.797 _AAATGNAS(ph)PGKLEHSK_
KDM1B Phosphorylation S13 0.489 -0.073 _KAS(ph)FDHSPDSLPLR_

Background Information for KDM1B:


Pubmed-KDM1B »
Uniprot-KDM1B »
Biogrid-KDM1B »
ProteomicsDB-KDM1B »

Tumorportal-KDM1B »
COSMIC-KDM1B »
GenomeRNAi-KDM1B »
Genecards-KDM1B


Protein-protein Interactions for KDM1B
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait BAP1 Cat. description Hein, Mann, Cell 2015
Category members IP bait KDM1B Cat. description Hein, Mann, Cell 2015
Category members IP bait WHSC1L1 Cat. description Hein, Mann, Cell 2015
Category members IP bait ASXL2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait FAM19A3 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait GLYR1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait HAVCR2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait NDUFA10 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait SH2D2A Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait SPATA17 Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in KDM1B
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members SWIRM IPR007526 1.31
Category members Pyr_OxRdtase_NAD-bd_dom IPR001327 0.03
Category members GIDA-rel IPR002218 0
Category members Amino_oxidase IPR002937 0
Category members mOase_FAD-bd IPR002938 0
Category members Rng_hydrolase-like IPR003042 0
Category members FAD_bind_dom IPR003953 0
Category members CHP00275_HI0933-like IPR004792 0
Category members FAD-dep_OxRdtase IPR006076 0
Category members Homeodomain-like IPR009057 0
Category members Znf_CW IPR011124 0
Category members Pyr_nucl-diS_OxRdtase_FAD/NAD IPR023753 0


Protein complexes (CORUM database) featuring KDM1B
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring KDM1B
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005634 nucleus Database INF
Category members GO Category GO:0006349 regulation of gene expression by genetic imprinting Database 1.64
Category members GO Category GO:0003677 DNA binding Database 1.53
Category members GO Category GO:0006351 transcription, DNA-templated Database 1.07
Category members GO Category GO:0008033 tRNA processing Database 0.39
Category members GO Category GO:0007275 multicellular organismal development Database 0.31
Category members GO Category GO:0008270 zinc ion binding Database 0.29
Category members GO Category GO:0050660 flavin adenine dinucleotide binding Database 0.12
Category members GO Category GO:0034720 histone H3-K4 demethylation Database 0.05
Category members GO Category GO:0044030 regulation of DNA methylation Database 0.05
Category members GO Category GO:0006355 regulation of transcription, DNA-dependent Database 0
Category members GO Category GO:0016491 oxidoreductase activity Database 0
Category members GO Category GO:0034648 histone demethylase activity (H3-dimethyl-K4 specific) Database 0
Category members GO Category GO:0043046 DNA methylation involved in gamete generation Database 0
Category members GO Category GO:0055114 oxidation-reduction process Database 0


.

© Copyright Svejstrup Laboratory 2015