bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

bioLOGIC Data


Exact search


Query: TRMU

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
TRMU 0 -1.034 -0.860 0.730

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
TRMU Ubiquitylation K395 -1.764 _LGPSAYTLQK(gl)GQR_

Background Information for TRMU:


Pubmed-TRMU »
Uniprot-TRMU »
Biogrid-TRMU »
ProteomicsDB-TRMU »

Tumorportal-TRMU »
COSMIC-TRMU »
GenomeRNAi-TRMU »
Genecards-TRMU


Protein-protein Interactions for TRMU
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait C15orf17 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait HOXC10 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait HSPD1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait IL1R2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait THUMPD3 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait YBEY Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in TRMU
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members Asn_synthase IPR001962 0
Category members tRNA-specific_2-thiouridylase IPR004506 0
Category members NAD/GMP_synthase IPR022310 0


Protein complexes (CORUM database) featuring TRMU
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring TRMU
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005737 cytoplasm Database 12.81
Category members GO Category GO:0005524 ATP binding Database 5.54
Category members GO Category GO:0005739 mitochondrion Database 1.67
Category members GO Category GO:0008033 tRNA processing Database 0.39
Category members Disease phenotype Mitochondrial_non-syndromic_sensorineural_deafness Mitochondrial non-syndromic sensorineural deafness Database 0.33
Category members Disease phenotype Deafness_aminoglycoside-induced Deafness aminoglycoside-induced Database 0.29
Category members GO Category GO:0016740 transferase activity Database 0.07
Category members GO Category GO:0016783 sulfurtransferase activity Database 0.02
Category members GO Category GO:0000049 tRNA binding Database 0
Category members GO Category GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity Database 0
Category members GO Category GO:0006529 asparagine biosynthetic process Database 0
Category members GO Category GO:0008168 methyltransferase activity Database 0


.

© Copyright Svejstrup Laboratory 2015