RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
SPAG9	2	-0.110	0.210	1.305
CTNNA1	1	-0.520	1.660		-0.690	-1.164
CTNNA1	1	-0.520	1.660	0.139			0.436	0.323
CAPZB	1	0.940	-1.150	0.175	0.103	0.384	0.305	-0.428
FNDC3A	1	0.480	-0.460				-0.044	0.161
TCP1	1	0.910	-0.350	-0.279	-0.943	-0.582	0.460	0.439
CXADR	1	-0.550	1.230				0.333	1.691
ARC	1	0.350	-0.540
VEZT	0	-0.910	0.990					-1.534
HEXB	0	-0.370	0.060				0.103
CD46	0	0.540	-0.870
POMT1	0	-0.330	-0.260
CASC5	0	1.010	-0.520
USP8	0	0.830	-0.320
ADAM15	0	-1.250	1.050					-2.965
CCT6A	0	0.330	-0.060	-0.116	-0.788	-0.510	0.477	0.245
CCT6A	0	0.330	-0.060
ITGB1	0	0.390	-0.650				0.101	-0.036
RACGAP1	0	0.180	0.230				-0.308	-0.006
RACGAP1	0	1.070	-0.710				-0.308	-0.006
CALR	0	-1.300	2.220				0.480	0.054
CLK3	0	0.000	0.270	1.140			0.556	0.830
CLK3	0	0.000	0.270
ATP6V0A2	0	1.190	-0.740				0.137	-0.457
ITGA1	0	-0.750	1.480				0.650	0.069
GNAT3	0	1.110	-0.500	-0.166	-0.094	0.032	0.420	0.504
CRCP	0	-0.180	-0.390
ATP6V1E2	0	-0.020	-0.010

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ADAM15	Ubiquitylation	K59		-1.920	_K(gl)VLQTSLPEPLR_
ADAM15	Ubiquitylation	K729	-0.467	-0.591	_LCQLK(gl)GPTCQYR_
ARC	Ubiquitylation	K70	-2.090	-2.396	_SVGK(gl)LESNLDGYVPTSDSQR_
ARC	Ubiquitylation	K92		-1.864	_SIK(gl)ACLCR_
ARC	Ubiquitylation	K269		3.154	_NWVEFKK(gl)_
ATP6V0A2	Ubiquitylation	K136	0.287		_VTK(gl)TFVKR_
ATP6V0A2	Ubiquitylation	K290	0.039	-0.079	_QVLCK(gl)AAESVYSR_
ATP6V0A2	Phosphorylation	S695	0.705	0.859	_KDS(ph)EEEVSLLGSQDIEEGNHQVEDGCR_
ATP6V1E2	Ubiquitylation	K10	0.468		_ALSDVDVKK(gl)_
CALR	Ubiquitylation	K48		0.703	_SDFGK(gl)FVLSSGK_
CALR	Ubiquitylation	K153	-0.924	0.619	_GK(gl)NVLINK_
CALR	Ubiquitylation	K159	-1.004	0.381	_NVLINK(gl)DIR_
CAPZB	Ubiquitylation	K286	0.843	0.715	_LVEDMENK(gl)IR_
CAPZB	Ubiquitylation	K298	0.345	1.035	_STLNEIYFGK(gl)TK_
CAPZB	Ubiquitylation	K300	0.315	1.544	_STLNEIYFGKTK(gl)_
CAPZB	Ubiquitylation	K315		1.983	_SVQTFADK(gl)SK_
CAPZB	Ubiquitylation	K317	0.515	1.983	_SVQTFADKSK(gl)_
CASC5	Phosphorylation	S60	1.146	-0.112	_RVS(ph)FADTIK_
CASC5	Phosphorylation	S1076		-0.351	_DVQS(ph)PGFLNEPLSSK_
CCT6A	Ubiquitylation	K5	-0.911	-0.385	_(ac)AAVK(gl)TLNPK(gl)AEVAR_
CCT6A	Ubiquitylation	K10	-0.519	1.185	_TLNPK(gl)AEVAR_
CCT6A	Ubiquitylation	K41	-0.001	0.417	_TNLGPK(gl)GTMK_
CCT6A	Ubiquitylation	K127	0.601	0.073	_IITEGFEAAK(gl)EK_
CCT6A	Ubiquitylation	K129	0.572	0.697	_EK(gl)ALQFLEEVK_
CCT6A	Ubiquitylation	K199	-0.073		_HK(gl)SETDTSLIR_
CCT6A	Ubiquitylation	K280	0.578		_K(gl)VCGDSDKGFVVINQK_
CCT6A	Ubiquitylation	K365	-0.522	-0.685	_FTFIEK(gl)CNNPR_
CCT6A	Ubiquitylation	K377	0.067	0.134	_SVTLLIK(gl)GPNK_
CCT6A	Ubiquitylation	K381	0.062		_GPNK(gl)HTLTQIK_
CCT6A	Ubiquitylation	K530	-0.356	0.874	_AGMSSLK(gl)G_
CD46	Ubiquitylation	K224		-0.397	_AAPECK(gl)VVK_
CD46	Ubiquitylation	K245		0.509	_QISGFGKK(gl)_
CLK3	Phosphorylation	S157	-0.522	-0.435	_S(ph)PEPDPYLSYR_
CLK3	Phosphorylation	Y163		-0.111	_YRSPEPDPY(ph)LSYR_
CLK3	Ubiquitylation	K328		-0.697	_GK(gl)SQVALK_
CLK3	Ubiquitylation	K460		-1.413	_SVK(gl)NTSIR_
CRCP	Ubiquitylation	K257		-0.107	_EFLTALK(gl)SHK_
CTNNA1	Ubiquitylation	K16	-0.194	-0.141	_WDPK(gl)SLEIR_
CTNNA1	Ubiquitylation	K45	-1.131	-0.728	_LLEPLVTQVTTLVNTNSK(gl)GPSNK_
CTNNA1	Ubiquitylation	K120		-0.333	_AAAGEFADDPCSSVK(gl)R_
CTNNA1	Ubiquitylation	K414	0.977		_NGNEK(gl)EVKEYAQVFR_
CTNNA1	Ubiquitylation	K417	0.211		_NGNEK(gl)EVKEYAQVFR_
CTNNA1	Phosphorylation	S641	-0.056	0.089	_TPEELDDS(ph)DFETEDFDVR_
CTNNA1	Phosphorylation	T654	0.808	0.392	_SRT(ph)SVQTEDDQLIAGQSAR_
CTNNA1	Phosphorylation	S655	1.043	0.882	_SRTS(ph)VQTEDDQLIAGQSAR_
CTNNA1	Ubiquitylation	K683	3.760	-0.837	_AIMAQLPQEQKAK(gl)_
CTNNA1	Ubiquitylation	K747		-0.384	_NTSDVISAAK(gl)K_
CTNNA1	Ubiquitylation	K748	-0.083	-0.384	_NTSDVISAAKK(gl)_
CXADR	Phosphorylation	S332	-0.817	-0.804	_TPQS(ph)PTLPPAK_
FNDC3A	Phosphorylation	S203	1.581	-0.157	_MSS(ph)PPSSPQK_
ITGB1	Ubiquitylation	K774	0.402		_MNAK(gl)WDTGENPIYK_
ITGB1	Ubiquitylation	K784	-0.172	0.350	_WDTGENPIYK(gl)SAVTTVVNPK_
ITGB1	Ubiquitylation	K794	0.755	0.604	_SAVTTVVNPK(gl)YEGK_
POMT1	Ubiquitylation	K379		0.088	_DVNNWWIVK(gl)DPRR_
POMT1	Ubiquitylation	K497		0.103	_QLEIVGEK(gl)LSR_
POMT1	Ubiquitylation	K732		-0.512	_SLSPHELK(gl)ALR_
RACGAP1	Ubiquitylation	K53	0.960		_TDHELGK(gl)YK_
RACGAP1	Ubiquitylation	K60	1.380		_DLLMK(gl)AETER_
RACGAP1	Ubiquitylation	K71	0.352	0.233	_SALDVK(gl)LK_
RACGAP1	Ubiquitylation	K84	0.484	0.846	_NQVDVEIK(gl)RR_
RACGAP1	Ubiquitylation	K95	-0.492		_AEADCEK(gl)LER_
RACGAP1	Ubiquitylation	K199	-2.285	-0.347	_QFVDGPPGPVK(gl)K_
RACGAP1	Ubiquitylation	K200	-0.365	-0.347	_QFVDGPPGPVKK(gl)_
RACGAP1	Phosphorylation	S203	1.255	0.831	_S(ph)IGSAVDQGNESIVAK_
RACGAP1	Ubiquitylation	K292	-0.427		_LHDFVSK(gl)TVIKPESCVPCGK_
RACGAP1	Ubiquitylation	K305	-0.770		_TVIKPESCVPCGK(gl)R_
RACGAP1	Phosphorylation	T342	-1.072	-0.919	_DRCPLPCIPTLIGT(ph)PVK_
RACGAP1	Ubiquitylation	K404	-0.200		_VK(gl)TVPLLSK_
RACGAP1	Ubiquitylation	K490	0.528		_VAQSPHTK(gl)MDVANLAK_
RACGAP1	Phosphorylation	T580	-0.839		_VSLLGPVTT(ph)PEHQLLK_
RACGAP1	Ubiquitylation	K587	-0.985		_VSLLGPVTTPEHQLLK(gl)TPSSSSLSQR_
RACGAP1	Phosphorylation	S590	-0.415	-0.021	_TPS(ph)SSSLSQR_
RACGAP1	Phosphorylation	S591		-0.217	_TPSS(ph)SSLSQR_
RACGAP1	Ubiquitylation	K604	0.953		_STLTK(gl)NTPR_
SPAG9	Ubiquitylation	K178	0.616		_TK(gl)LHQLSGSDQLESTAHSR_
SPAG9	Phosphorylation	S183	-0.041	0.617	_LHQLS(ph)GSDQLESTAHSR_
SPAG9	Phosphorylation	S185	-0.229	0.589	_LHQLSGS(ph)DQLESTAHSR_
SPAG9	Phosphorylation	S203	-0.173	0.319	_ERPIS(ph)LGIFPLPAGDGLLT(ph)PDAQK_
SPAG9	Phosphorylation	T217	1.022	0.515	_ERPIS(ph)LGIFPLPAGDGLLT(ph)PDAQK_
SPAG9	Phosphorylation	T226	2.211	2.141	_GGET(ph)PGSEQWK_
SPAG9	Phosphorylation	T275		2.752	_AT(ph)TPASTANSDVATIPTDTPLKEENEGFVK_
SPAG9	Phosphorylation	T276	2.516	2.823	_ATT(ph)PASTANSDVATIPTDTPLKEENEGFVK_
SPAG9	Phosphorylation	T292	2.076	1.667	_ATTPASTANSDVATIPTDT(ph)PLKEENEGFVK_
SPAG9	Phosphorylation	T330		0.261	_NVST(ph)GSAENEEKSEVQAIIESTPELDMDKDLSGYK_
SPAG9	Phosphorylation	S339	-0.150	0.210	_NVSTGSAENEEKS(ph)EVQAIIESTPELDMDKDLSGYK_
SPAG9	Phosphorylation	S593		0.642	_KRS(ph)STLSQLPGDK_
SPAG9	Phosphorylation	S594	0.719	0.528	_RSS(ph)TLSQLPGDK_
SPAG9	Phosphorylation	T595		0.585	_KRSST(ph)LSQLPGDK_
SPAG9	Ubiquitylation	K653	-0.358		_VQAFGWSLPQK(gl)YK_
SPAG9	Ubiquitylation	K699	-0.277		_LWCAVGVNLSGGK(gl)TR_
SPAG9	Phosphorylation	S728	0.903	-0.047	_S(ph)ASQSSLDKLDQELKEQQK_
SPAG9	Phosphorylation	S730	0.163	0.677	_SAS(ph)QSSLDKLDQELK_
SPAG9	Phosphorylation	S732	0.961	0.900	_SASQS(ph)SLDKLDQELKEQQK_
SPAG9	Phosphorylation	S733	0.740	0.712	_SASQSS(ph)LDKLDQELK_
SPAG9	Phosphorylation	S813		0.253	_ETDYPAGEDLS(ph)ESGQVDK_
SPAG9	Phosphorylation	S815		-0.037	_ETDYPAGEDLSES(ph)GQVDK_
SPAG9	Phosphorylation	T1264	-1.557	-1.235	_AGPSAQEPGSQT(ph)PLK_
TCP1	Ubiquitylation	K109	-0.135	0.674	_NADELVK(gl)QK_
TCP1	Ubiquitylation	K126	-0.013	0.696	_LACK(gl)EAVR_
TCP1	Ubiquitylation	K153		1.172	_DCLINAAK(gl)TSMSSK_
TCP1	Ubiquitylation	K365	2.257		_ICDDELILIK(gl)NTK_
TCP1	Ubiquitylation	K400	0.670	0.460	_SLHDALCVVK(gl)R_
TCP1	Ubiquitylation	K532	-0.204	-0.345	_IDDLIK(gl)LHPESK_
TCP1	Phosphorylation	S544	0.593	0.207	_HGS(ph)YEDAVHSGALND_
USP8	Phosphorylation	S392	-0.015	0.284	_SDVS(ph)PIIQPVPSIK_
USP8	Phosphorylation	T577	-0.048	0.069	_RCPT(ph)PEIQKK_
USP8	Phosphorylation	S716	0.750	0.023	_S(ph)YSSPDITQAIQEEEKR_
USP8	Phosphorylation	S718	0.338	0.273	_SYS(ph)SPDITQAIQEEEKR_