RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
POLR2E	3			-1.668	0.597	1.782	-1.557	1.254
POU2F1	2	-0.480	0.830
POLR2L	2	-1.510	2.550	-0.148	0.893	1.580
POLR3A	1	-0.550	1.310	-0.221			0.400	0.226
POLR2H	1			-0.862	1.290	2.109	0.203	0.602
POLR1D	1	-1.180	1.710	3.224
POLR1D	1	-0.480	1.030	3.224
POLR3B	0	0.540	-0.900				1.056	0.594
POLR3E	0	0.320	-0.320				0.600
POLR3E	0	0.320	-0.320	-0.565
POLR2F	0			-2.123
TBP	0	1.610	-1.170	-0.831
GTF3C2	0	-0.740	1.380	0.588	0.022	0.353	0.817	-0.003
GTF3C3	0	1.180	-0.630	-0.946	0.315	0.638	0.498	0.490
GTF3C4	0	0.860	0.000	0.093	0.071	0.710	0.425	0.393
POLR3F	0	0.270	-0.630
SSB	0	-0.280	0.190			-2.187	-0.343	0.023
POLR2K	0	0.330	-0.790	-0.751
NFIB	0	-1.030	1.080	-0.711	0.025	0.306		1.031
GTF3C5	0	-0.700	0.380	-0.678	0.081	0.499	-0.319	-0.008
SNAPC3	0	1.720	-1.040
SNAPC4	0	-0.130	-0.220
ZNF143	0	0.400	-0.510	0.327
POLR3D	0	-0.570	0.130
POLR1C	0	-1.340	1.750	-0.547	0.025	-0.150	0.246	0.218
BRF1	0	-0.990	1.780

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
BRF1	Phosphorylation	T365	0.704	0.482	_DGSTEDTASSLCGEEDT(ph)EDEELEAAASHLNK_
BRF1	Phosphorylation	S450		-0.470	_DASGDGELDLS(ph)GIDDLEIDR_
BRF1	Phosphorylation	S553	0.355	0.122	_GLSSAGGGS(ph)PHREDAQPEHSASAR_
GTF3C2	Phosphorylation	S167	0.360	0.026	_DLDRPESQS(ph)PK_
GTF3C2	Phosphorylation	S892		0.228	_AHFNAMFQPS(ph)SPTR_
GTF3C2	Phosphorylation	S893	0.380	0.340	_AHFNAM(ox)FQPSS(ph)PTR_
GTF3C2	Phosphorylation	T895		0.323	_AHFNAM(ox)FQPSS(ph)PTR_
GTF3C2	Phosphorylation	S901		1.357	_RPGFS(ph)PTSHR_
GTF3C3	Phosphorylation	S43	0.108	0.230	_LS(ph)AEENPDDSEVPSSSGINSTK_
GTF3C3	Ubiquitylation	K245	-0.753	-0.309	_ALK(gl)YEPTNVR_
GTF3C3	Ubiquitylation	K268	-0.270		_SSLYEQMGDHK(gl)MAMDGYR_
GTF3C4	Ubiquitylation	K119	-0.474	-0.928	_TSVPAPLNSCLLK(gl)VGSK_
GTF3C4	Ubiquitylation	K123	1.287	0.177	_VGSK(gl)TEVAECK_
GTF3C4	Ubiquitylation	K137	0.416	1.107	_FAASK(gl)DPTVSQTFMLDR_
GTF3C4	Ubiquitylation	K225	-0.330	-0.022	_LSK(gl)NEAPEGNLGDFAEFQR_
GTF3C4	Phosphorylation	S611	0.441	0.170	_ILLVDS(ph)PGMGNADDEQQEEGTSSK_
GTF3C4	Ubiquitylation	K633	0.210	-1.180	_QVVK(gl)QGLQER_
GTF3C4	Ubiquitylation	K736	0.213		_VLIGHISK(gl)K_
GTF3C4	Ubiquitylation	K737	0.213		_VLIGHISK(gl)K_
GTF3C5	Ubiquitylation	K38	-1.734		_DVAK(gl)MLPTLGGEEGVSR_
GTF3C5	Ubiquitylation	K58		-0.828	_IYADPTK(gl)R_
GTF3C5	Ubiquitylation	K341	-0.684	-2.030	_HGYAPSDLPVKAK(gl)_
NFIB	Phosphorylation	S294		-1.873	_TISIDENM(ox)EPSPTGDFYPSPS(ph)SPAAGSR_
NFIB	Phosphorylation	S295	-1.280		_TISIDENMEPSPTGDFYPSPSS(ph)PAAGSR_
NFIB	Phosphorylation	S300	-1.728		_TISIDENM(ox)EPSPTGDFYPSPSSPAAGS(ph)R_
NFIB	Phosphorylation	S311	1.021	0.671	_DQDMS(ph)SPTTM(ox)K_
NFIB	Phosphorylation	S312	0.764	0.746	_DQDMSS(ph)PTTMK_
NFIB	Phosphorylation	T314		0.827	_DQDMSSPT(ph)TMK_
NFIB	Phosphorylation	S325		0.852	_KPEKPLFS(ph)SASPQDSSPR_
NFIB	Phosphorylation	S328	1.295	0.637	_KPEKPLFSSAS(ph)PQDSSPR_
NFIB	Phosphorylation	S332	-0.428	-1.102	_KPEKPLFSSASPQDS(ph)SPR_
NFIB	Phosphorylation	S333	-0.428		_KPEKPLFSSASPQDS(ph)SPR_
POLR1C	Ubiquitylation	K167		-0.721	_DSSDPNELYVNHK(gl)VYTR_
POLR1C	Ubiquitylation	K332		-0.542	_VLMGK(gl)CR_
POLR1D	Ubiquitylation	K15	-0.683		_ISGLK(gl)TSMAEGER_
POLR2E	Ubiquitylation	K85	2.361	2.270	_VGIK(gl)TIK_
POLR2E	Ubiquitylation	K88	-0.032	0.560	_TIK(gl)VYCQR_
POLR2E	Ubiquitylation	K192	0.061	-0.593	_GQVVK(gl)IIRPSETAGR_
POLR2F	Ubiquitylation	K59	0.390	0.897	_ITTPYM(ox)TK(gl)YER_
POLR2F	Ubiquitylation	K101	0.662		_K(gl)IPIIIR_
POLR2H	Ubiquitylation	K146		0.110	_VYLLMK(gl)K_
POLR2H	Ubiquitylation	K147	0.013	-0.168	_VYLLMKK(gl)_
POLR2L	Ubiquitylation	K67	0.770	0.200	_LLNYAPLEK(gl)_
POLR3A	Ubiquitylation	K398		0.278	_VNK(gl)ANINFLR_
POLR3A	Ubiquitylation	K439		-0.169	_EK(gl)MAQELK_
POLR3A	Ubiquitylation	K713		-2.239	_AK(gl)YELLNAGYK_
POLR3A	Ubiquitylation	K974	3.079		_FIK(gl)GVSEK_
POLR3A	Ubiquitylation	K1242	0.246	-0.360	_AVM(ox)ATHGVK(gl)GTR_
POLR3B	Ubiquitylation	K404	1.232		_AAQFDVVK(gl)HMR_
POLR3B	Ubiquitylation	K968	0.649	0.285	_FHYGTAFGGSK(gl)VK_
POLR3D	Ubiquitylation	K152	-0.596		_ETDEETK(gl)QILR_
POLR3E	Phosphorylation	S161	0.361	0.417	_EAANEAGDS(ph)SQDEAEDDVK_
POLR3E	Phosphorylation	S162	0.003	0.673	_EAANEAGDSS(ph)QDEAEDDVK_
POLR3E	Phosphorylation	S503	-0.905	-0.565	_IKEEPVS(ph)EEGEEDEEQEAEEEPM(ox)DTSPSGLHSK_
POLR3E	Phosphorylation	T521		-2.499	_IKEEPVSEEGEEDEEQEAEEEPMDT(ph)SPSGLHSK_
POLR3F	Ubiquitylation	K199	-0.038		_ESK(gl)QNPMIQR_
POU2F1	Phosphorylation	S8	1.971	2.219	_(ac)ADGGAAS(ph)QDESSAAAAAAADSR_
POU2F1	Phosphorylation	S408	0.932	1.562	_RTS(ph)IETNIR_
POU2F1	Phosphorylation	S471	-0.483	-0.496	_RINPPSSGGTSSS(ph)PIK_
SNAPC3	Ubiquitylation	K287	-0.584	-0.438	_GYGK(gl)FQTAR_
SNAPC3	Ubiquitylation	K345		-0.643	_TLYPLLIK(gl)K_
SNAPC3	Ubiquitylation	K346		-0.643	_TLYPLLIK(gl)K_
SNAPC4	Phosphorylation	S599		-0.230	_GGAGAWLGGPAASLS(ph)PPKGSSASQGGSK_
SNAPC4	Phosphorylation	S1398	0.524		_VGS(ph)ESEDEDLLSELELADR_
SNAPC4	Phosphorylation	S1400	0.524	0.144	_VGSES(ph)EDEDLLSELELADR_
SSB	Ubiquitylation	K9	0.171		_(ac)AENGDNEK(gl)MAALEAK_
SSB	Ubiquitylation	K37	0.184		_DKFLK(gl)EQIK_
SSB	Ubiquitylation	K76	0.247		_SK(gl)AELMEISEDKTK_
SSB	Ubiquitylation	K88	-0.144		_AELMEISEDKTK(gl)IR_
SSB	Phosphorylation	S92	-0.549	-0.960	_S(ph)PSKPLPEVTDEYK_
SSB	Phosphorylation	S94	-0.455	-0.863	_SPS(ph)KPLPEVTDEYKNDVK_
SSB	Ubiquitylation	K166	0.281		_K(gl)FVETPGQK_
SSB	Ubiquitylation	K191	0.063		_DDYFAK(gl)K_
SSB	Ubiquitylation	K224	-0.359		_QKLEEDAEMK(gl)SLEEK_
SSB	Ubiquitylation	K269	-0.371		_GAK(gl)EGIILFK_
SSB	Ubiquitylation	K276	0.992	0.682	_EGIILFK(gl)EK_
SSB	Ubiquitylation	K278		0.682	_EGIILFK(gl)EK_
SSB	Ubiquitylation	K287	0.046	1.014	_AK(gl)DANNGNLQLR_
SSB	Ubiquitylation	K328	0.436	0.707	_IIEDQQESLNK(gl)WK_
SSB	Ubiquitylation	K361	0.065		_GKVQFQGKK(gl)_
SSB	Phosphorylation	S366	0.043	0.146	_FAS(ph)DDEHDEHDENGATGPVKR_
TBP	Ubiquitylation	K181	-0.140	-0.577	_LDLK(gl)TIALR_
TBP	Ubiquitylation	K225		-0.596	_MVCTGAK(gl)SEEQSR_