bioLOGIC-db

bioLOGIC Data

Query: GTF3C5

[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:
Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen

Gene name	Point score	Z-score sums	RNAi high	RNAi low	RNAPII-IP (PI)	CSB-IP	CSB-IP (PI)	Chrom.	Chrom. (PI)
GTF3C5	0	-1.558	-0.700	0.380	-0.678	0.081	0.499	-0.319	-0.008

PTM Sites:
Back to Protein Results | Red/green: hit at lower/upper end of the respective screen

Gene name	PTM type	PTM site	UV	UV (PI)	Sequence
GTF3C5	Ubiquitylation	K58		-0.828	_IYADPTK(gl)R_
GTF3C5	Ubiquitylation	K341	-0.684	-2.030	_HGYAPSDLPVKAK(gl)_
GTF3C5	Ubiquitylation	K38	-1.734		_DVAK(gl)MLPTLGGEEGVSR_

ProteomicsDB-GTF3C5 »

Protein-protein Interactions for GTF3C5

Show screen data for	Category Name and Description	Link to cat description	Data Source
Category members	IP bait CBX1	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait ETS2	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait GTF3C2	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait GTF3C3	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait GTF3C4	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait HDAC6	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait NCAPG2	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait NIPSNAP1	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait PHKG2	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait RBM8A	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait RFX5	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait RPL35	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait FBL	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait GTF3C3	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015

Protein Domains in GTF3C5

	Domain name	Domain Description	TC-NER relevance -log10(p-value)

Protein complexes (CORUM database) featuring GTF3C5

	Category Type	Category ID	Category Name	Data Source	TC-NER relevance -log10(p-value)
Category members	Corum	1106	TFIIIC containing-TOP1-SUB1 complex	Database	0.72
Category members	Corum	1114	5S-DNA-TFIIIA-TFIIIC2-TFIIIB subcomplex	Database	0.25
Category members	Corum	1101	TFIIIC containing complex TFIIIC2	Database	0.23
Category members	Corum	1105	TFIIIC containing complex	Database	0.23
Category members	Corum	1113	5S-DNA-TFIIIA-TFIIIC2 subcomplex	Database	0.08

Categories featuring GTF3C5

	Category Type	Category ID	Category Name	Data Source	TC-NER relevance -log10(p-value)
Category members	GO Category	GO:0005515	protein binding	Database	INF
Category members	GO Category	GO:0005654	nucleoplasm	Database	INF
Category members	GO Category	GO:0010467	gene expression	Database	INF
Category members	Pathway	Pathway_348	REACTOME_TRANSCRIPTION	0	9
Category members	Pathway	Pathway_350	REACTOME_RNA_POL_I_RNA_POL_III_AND_MITOCHONDRIAL_TRANSCRIPTION	0	7.97
Category members	GO Category	GO:0003677	DNA binding	Database	1.53
Category members	GO Category	GO:0006351	transcription, DNA-templated	Database	1.07
Category members	Pathway	Pathway_355	REACTOME_RNA_POL_III_TRANSCRIPTION_INITIATION_FROM_TYPE_2_PROMOTER	0	0.37
Category members	Pathway	Pathway_357	REACTOME_RNA_POL_III_TRANSCRIPTION	0	0.29
Category members	GO Category	GO:0006383	transcription from RNA polymerase III promoter	Database	0.18
Category members	GO Category	GO:0000127	transcription factor TFIIIC complex	Database	0.08
Category members	GO Category	GO:0042791	5S class rRNA transcription from RNA polymerase III type 1 promoter	Database	0.08
Category members	GO Category	GO:0042797	tRNA transcription from RNA polymerase III promoter	Database	0.08
Category members	GO Category	GO:0035914	skeletal muscle cell differentiation	Database	0