RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
TOP1	3	0.970	-0.880
TOP1	3	0.970	-0.880	0.567	0.872	1.232	0.631	0.425
SUB1	1	0.200	-0.090	0.504	1.708		-0.635	-0.243
GTF3C1	0	0.050	-0.600	-0.270	0.224	0.458	0.304	-0.025
GTF3C1	0	0.050	-0.600
GTF3C2	0	-0.740	1.380	0.588	0.022	0.353	0.817	-0.003
GTF3C3	0	1.180	-0.630	-0.946	0.315	0.638	0.498	0.490
GTF3C4	0	0.860	0.000	0.093	0.071	0.710	0.425	0.393
GTF3C5	0	-0.700	0.380	-0.678	0.081	0.499	-0.319	-0.008

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
GTF3C1	Ubiquitylation	K130		-1.217	_TK(gl)SLQPR_
GTF3C1	Ubiquitylation	K254	0.692		_SK(gl)YDILMEK_
GTF3C1	Ubiquitylation	K382	-0.513		_RGTK(gl)GISQAEIR_
GTF3C1	Ubiquitylation	K397	-1.377		_VAMNVGK(gl)LEAR_
GTF3C1	Ubiquitylation	K685	-0.345	-0.267	_TTVIQDGIK(gl)K_
GTF3C1	Phosphorylation	S739	-0.482		_TSQPPVPQGEAEEDS(ph)QGKEGPSGSGDSQLSASSR_
GTF3C1	Ubiquitylation	K958		-0.083	_QQLLYK(gl)R_
GTF3C1	Phosphorylation	S1068		0.783	_NSSTDQGS(ph)DEEGSLQK_
GTF3C1	Ubiquitylation	K1325		-1.082	_YIVK(gl)NPQAYLNYK_
GTF3C1	Ubiquitylation	K1473	-0.060	0.770	_AFMECQK(gl)R_
GTF3C1	Ubiquitylation	K1535		-1.145	_AAGK(gl)LDQPDR_
GTF3C1	Phosphorylation	S1611		0.187	_DGS(ph)LEDDEDEEDDLDEGVGGK_
GTF3C1	Ubiquitylation	K1771		-0.608	_FSALEK(gl)AGGGR_
GTF3C1	Phosphorylation	S1854	-1.343	-0.955	_PLEGSSSEDSPPEGQAPPS(ph)HSPR_
GTF3C1	Phosphorylation	S1856	-1.073	-1.356	_PLEGSSSEDSPPEGQAPPSHS(ph)PR_
GTF3C2	Phosphorylation	S167	0.360	0.026	_DLDRPESQS(ph)PK_
GTF3C2	Phosphorylation	S892		0.228	_AHFNAMFQPS(ph)SPTR_
GTF3C2	Phosphorylation	S893	0.380	0.340	_AHFNAM(ox)FQPSS(ph)PTR_
GTF3C2	Phosphorylation	T895		0.323	_AHFNAM(ox)FQPSS(ph)PTR_
GTF3C2	Phosphorylation	S901		1.357	_RPGFS(ph)PTSHR_
GTF3C3	Phosphorylation	S43	0.108	0.230	_LS(ph)AEENPDDSEVPSSSGINSTK_
GTF3C3	Ubiquitylation	K245	-0.753	-0.309	_ALK(gl)YEPTNVR_
GTF3C3	Ubiquitylation	K268	-0.270		_SSLYEQMGDHK(gl)MAMDGYR_
GTF3C4	Ubiquitylation	K119	-0.474	-0.928	_TSVPAPLNSCLLK(gl)VGSK_
GTF3C4	Ubiquitylation	K123	1.287	0.177	_VGSK(gl)TEVAECK_
GTF3C4	Ubiquitylation	K137	0.416	1.107	_FAASK(gl)DPTVSQTFMLDR_
GTF3C4	Ubiquitylation	K225	-0.330	-0.022	_LSK(gl)NEAPEGNLGDFAEFQR_
GTF3C4	Phosphorylation	S611	0.441	0.170	_ILLVDS(ph)PGMGNADDEQQEEGTSSK_
GTF3C4	Ubiquitylation	K633	0.210	-1.180	_QVVK(gl)QGLQER_
GTF3C4	Ubiquitylation	K736	0.213		_VLIGHISK(gl)K_
GTF3C4	Ubiquitylation	K737	0.213		_VLIGHISK(gl)K_
GTF3C5	Ubiquitylation	K38	-1.734		_DVAK(gl)MLPTLGGEEGVSR_
GTF3C5	Ubiquitylation	K58		-0.828	_IYADPTK(gl)R_
GTF3C5	Ubiquitylation	K341	-0.684	-2.030	_HGYAPSDLPVKAK(gl)_
SUB1	Phosphorylation	S24	-1.193	0.870	_ELVSSSSSGSDS(ph)DSEVDK_
SUB1	Ubiquitylation	K46	-0.067		_QVAPEKPVKK(gl)_
SUB1	Ubiquitylation	K60	0.447	0.112	_ALSSSK(gl)QSSSSRDDNMFQIGK_
SUB1	Ubiquitylation	K75	0.613	0.073	_DDNMFQIGK(gl)M(ox)R_
SUB1	Ubiquitylation	K87	0.439		_GK(gl)VLIDIR_
SUB1	Ubiquitylation	K104	-1.583	-0.083	_EYWMDPEGEMK(gl)PGR_
SUB1	Ubiquitylation	K108	-0.383		_K(gl)GISLNPEQWSQLK_
SUB1	Phosphorylation	S125	0.599		_EQIS(ph)DIDDAVR_
TOP1	Phosphorylation	S10	0.973	1.937	_(ac)SGDHLHNDS(ph)QIEADFR_
TOP1	Ubiquitylation	K245	2.277		_FYYDGK(gl)VMK_
TOP1	Ubiquitylation	K252		1.900	_LSPK(gl)AEEVATFFAK_
TOP1	Ubiquitylation	K391	0.019		_DAK(gl)VPSPPPGHK_
TOP1	Ubiquitylation	K545	2.178		_YYNKVPVEK(gl)R_
TOP1	Ubiquitylation	K642	2.317		_TFEK(gl)SMMNLQTK_