RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
ERCC6	4	-1.310	2.800	5.118			1.227	2.135
ERCC6	4	0.480	0.030	5.118			1.227	2.135
ERCC6	4	-1.310	2.800		0.074	0.258
ERCC6	4	0.480	0.030		0.074	0.258
GTF2H1	3	-0.470	0.340	0.260	2.656	2.859	1.092	0.966
ERCC2	2	-0.590	1.060	-0.491		1.066
GTF2H2	2	0.890	-0.020	0.105	2.323	2.292	1.092	0.150
GTF2H2C	2			0.105	2.323	2.292	1.092	0.150
ERCC3	2	-1.110	1.490		2.619	2.418		0.499
POLR1A	1	-1.130	0.600		0.018	-0.640
POLR1A	1	-1.130	0.600	0.940			0.421	0.350
RRN3	1	-2.020	3.080	-0.424
RRN3	1	0.540	-0.250	-0.424
KAT2B	1	-0.980	2.090
POLR1B	1	-1.220	2.660	0.614	0.697	0.425	1.045	0.207
POLR2H	1			-0.862	1.290	2.109	0.203	0.602
POLR1D	1	-1.180	1.710	3.224
POLR1D	1	-0.480	1.030	3.224
GTF2H4	1	-1.010	2.070		1.371	2.504
MNAT1	0	-0.030	-0.100			0.666
TAF1C	0	-1.030	2.200
UBTF	0	-0.020	0.110
UBTF	0	-0.020	0.110				0.507	0.155
UBTF	0	-0.020	0.110
GTF2H3	0	-0.020	0.680				1.408	0.908
TAF1B	0	-0.880	0.740
CCNH	0	1.480	-0.550
POLR2K	0	0.330	-0.790	-0.751
POLR1C	0	-1.340	1.750	-0.547	0.025	-0.150	0.246	0.218
EHMT2	0	-0.600	0.200		0.016	0.287
EHMT2	0	-0.600	0.200	0.152			0.633	0.298

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
CCNH	Ubiquitylation	K189	0.418		_K(gl)TADDFLNR_
EHMT2	Phosphorylation	S197		0.772	_MSMTGAGKS(ph)PPSVQSLAMR_
EHMT2	Phosphorylation	T228	-0.955		_LLSM(ox)PGAQGAAAAGSEPPPAT(ph)TSPEGQPK_
EHMT2	Phosphorylation	T229	-1.090		_LLSM(ox)PGAQGAAAAGSEPPPATT(ph)SPEGQPK_
EHMT2	Phosphorylation	S230	-1.006	-1.118	_LLSMPGAQGAAAAGSEPPPATTS(ph)PEGQPK_
EHMT2	Phosphorylation	S289	0.981		_LNS(ph)GGGLSEELGSAR_
EHMT2	Phosphorylation	T612		-0.754	_GDGVT(ph)PPAGTAAPAPPPLSQDVPGR_
EHMT2	Ubiquitylation	K939	-0.985		_NK(gl)EGDTAWDLTPER_
EHMT2	Ubiquitylation	K1104	0.804	0.344	_TAK(gl)MGWGVR_
ERCC2	Ubiquitylation	K268	5.973	1.957	_CQGNLETLQK(gl)TVLR_
ERCC2	Ubiquitylation	K507		-2.034	_GNDQVAISSK(gl)FETR_
ERCC6	Phosphorylation	S158	0.039	0.466	_IIEQLS(ph)PQAATSR_
ERCC6	Phosphorylation	S212		-0.295	_IELDHAS(ph)LEEDAEPGPSSLGSMLMPVQETAWEELIR_
ERCC6	Ubiquitylation	K255	0.184	-1.007	_TGQMTPFGTQIPQK(gl)QEK_
ERCC6	Ubiquitylation	K258	0.830	-1.007	_TGQMTPFGTQIPQKQEK(gl)_
ERCC6	Phosphorylation	T303		-1.105	_KAPAPVT(ph)PPAPVQNK_
ERCC6	Ubiquitylation	K345	0.454	-0.211	_ALQFQGK(gl)VGLPK_
ERCC6	Ubiquitylation	K606	0.305		_VAILHETGSYTHK(gl)K_
ERCC6	Ubiquitylation	K607	0.278		_VAILHETGSYTHKK(gl)_
ERCC6	Ubiquitylation	K663	-0.597	0.145	_NPNAAVTLACK(gl)QFR_
ERCC6	Ubiquitylation	K729	1.490	0.510	_TAYK(gl)CACVLR_
ERCC6	Ubiquitylation	K759		-0.019	_MSLSLPDK(gl)NEQVLFCR_
ERCC6	Ubiquitylation	K774	0.041	1.536	_LTDEQHK(gl)VYQNFVDSK_
ERCC6	Ubiquitylation	K783	0.262	-0.019	_VYQNFVDSK(gl)EVYR_
ERCC6	Ubiquitylation	K955	-0.048	-0.623	_K(gl)QVTVYR_
ERCC6	Phosphorylation	S1068	0.742	0.512	_KFPASNISVNDATS(ph)SEEKSEAK_
ERCC6	Phosphorylation	S1142	0.830	0.891	_TSMPS(ph)GDESIDEK_
ERCC6	Phosphorylation	S1146	1.367	0.961	_TSMPSGDES(ph)IDEK_
ERCC6	Ubiquitylation	K1156	0.818	-0.034	_LGLSYK(gl)R_
ERCC6	Ubiquitylation	K1295	0.149	0.443	_VAQDALK(gl)ALR_
ERCC6	Ubiquitylation	K1327	-0.793	0.156	_GISGAPAGK(gl)K_
ERCC6	Ubiquitylation	K1328	-0.793	0.232	_GISGAPAGKK(gl)_
ERCC6	Phosphorylation	S1345	0.486	0.469	_NSNFSVQHPS(ph)STSPTEK_
ERCC6	Phosphorylation	S1346	0.052	0.548	_NSNFSVQHPSS(ph)TSPTEK_
ERCC6	Phosphorylation	T1347	0.180	0.745	_NSNFSVQHPSST(ph)SPTEK_
ERCC6	Phosphorylation	S1348	0.238	0.374	_NSNFSVQHPSSTS(ph)PTEK_
ERCC6	Ubiquitylation	K1352	-1.415		_NSNFSVQHPSSTSPTEK(gl)CQDGIMK_
ERCC6	Ubiquitylation	K1359	0.923		_CQDGIMK(gl)K_
ERCC6	Ubiquitylation	K1360		2.898	_CQDGIMKK(gl)_
ERCC6	Ubiquitylation	K1363	-0.116	-0.707	_EGK(gl)DNVPEHFSGR_
ERCC6	Phosphorylation	S1379	0.589	0.418	_AEDADS(ph)SSGPLASSSLLAK_
ERCC6	Ubiquitylation	K1392	-0.822	-0.293	_AEDADSSSGPLASSSLLAK(gl)MR_
ERCC6	Ubiquitylation	K1457	0.602	1.210	_EILQEFESK(gl)LSASQSCVFR_
ERCC6	Ubiquitylation	K1487	-0.363	-0.266	_TSGGEGIWK(gl)LKPEYC_
GTF2H1	Ubiquitylation	K240	2.338		_LNTGSK(gl)DLFAECAK_
GTF2H2	Ubiquitylation	K42	-0.223		_ATIEDILFKAK(gl)_
GTF2H2	Ubiquitylation	K77		-1.015	_TMEDQDLK(gl)PNR_
GTF2H2	Ubiquitylation	K116		-1.309	_RAEK(gl)LTELSGNPR_
GTF2H2C	Ubiquitylation	K42	-0.223		_ATIEDILFKAK(gl)_
GTF2H2C	Ubiquitylation	K77		-1.015	_TMEDQDLK(gl)PNR_
GTF2H2C	Ubiquitylation	K116		-1.309	_RAEK(gl)LTELSGNPR_
GTF2H3	Ubiquitylation	K28		-0.741	_QALK(gl)ESQFTLSK_
GTF2H3	Ubiquitylation	K74		-0.538	_FLYPGK(gl)NGR_
GTF2H3	Ubiquitylation	K125	-0.584	-0.425	_SDIK(gl)GQHTETLLAGSLAK_
GTF2H3	Ubiquitylation	K152	-0.594		_MNKEVK(gl)DNQEMK_
GTF2H3	Ubiquitylation	K300		-1.837	_ISLPPVLKAK(gl)_
GTF2H4	Ubiquitylation	K452		-2.338	_LMVVTPAGHSDVK(gl)R_
KAT2B	Phosphorylation	S117		2.088	_NPNPS(ph)PTPPR_
MNAT1	Phosphorylation	S279	0.003	0.225	_AAS(ph)PQDLAGGYTSSLACHR_
POLR1A	Ubiquitylation	K252	-1.523		_DSEPLGIEEAQIGK(gl)R_
POLR1A	Ubiquitylation	K664		0.225	_GLTDK(gl)VGR_
POLR1A	Ubiquitylation	K981		0.277	_EGLVDTAVK(gl)TSR_
POLR1A	Ubiquitylation	K1101		0.179	_IQEAVK(gl)ALK_
POLR1A	Ubiquitylation	K1184		2.297	_SYEK(gl)SELSLDR_
POLR1A	Phosphorylation	S1429		-0.141	_EKQEEEVDYES(ph)EEEEEREGEENDDEDMQEER_
POLR1A	Ubiquitylation	K1704	0.337		_SPSACLVVGK(gl)VVR_
POLR1A	Ubiquitylation	K1716		-0.858	_GGTGLFELK(gl)QPLR_
POLR1B	Ubiquitylation	K70		-0.356	_EQQK(gl)AALQELTR_
POLR1B	Ubiquitylation	K132		-0.885	_GTICK(gl)EANVYPAECR_
POLR1B	Ubiquitylation	K518		-1.235	_GADFAK(gl)MR_
POLR1B	Ubiquitylation	K882	0.509	0.340	_SK(gl)ENCVVDNIK_
POLR1C	Ubiquitylation	K167		-0.721	_DSSDPNELYVNHK(gl)VYTR_
POLR1C	Ubiquitylation	K332		-0.542	_VLMGK(gl)CR_
POLR1D	Ubiquitylation	K15	-0.683		_ISGLK(gl)TSMAEGER_
POLR2H	Ubiquitylation	K146		0.110	_VYLLMK(gl)K_
POLR2H	Ubiquitylation	K147	0.013	-0.168	_VYLLMKK(gl)_
TAF1B	Ubiquitylation	K56	-2.072	0.281	_YQEVTNTDLIPNTQIK(gl)ALNR_
TAF1B	Ubiquitylation	K122	-3.070		_QAYCK(gl)NPVYTTGR_
TAF1C	Ubiquitylation	K434	-0.538	-0.380	_LGAEASCQK(gl)GER_
UBTF	Ubiquitylation	K45		0.246	_NNLPSNDSSK(gl)FK_
UBTF	Ubiquitylation	K47		0.246	_NNLPSNDSSK(gl)FK_
UBTF	Ubiquitylation	K71	0.458	0.860	_LK(gl)WVEISNEVR_
UBTF	Ubiquitylation	K284		0.940	_STLTK(gl)AER_
UBTF	Phosphorylation	S484	1.431	0.191	_GKLPES(ph)PKR_