RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
RPA1	6	0.500	0.350	3.133	3.046	0.303	1.770	2.112
RFC1	3	2.530	-1.230		0.635	1.060	1.028	0.826
RPA3	3	-0.760	1.900				1.805
RPA2	3	-1.830	3.700				1.524
RPA2	3	-1.830	3.700	2.592
MSH6	2	-0.410	0.140	-0.115	0.232	0.645	0.407	0.101
PCNA	2	-0.730	0.380	0.679	1.154	0.572	0.718	0.782
MSH2	1	-0.130	0.010	0.224	0.457	0.838	0.840	0.366
POLD1	0	1.600	-1.300	-0.932			0.362	0.283
POLD1	0	1.600	-1.300
MLH1	0	-0.460	0.110	-0.360	1.227	1.219
POLD3	0			-0.343
LIG1	0	0.370	-0.580
SSBP1	0	0.580	-0.460	0.755	0.990	-0.115
SSBP1	0	0.580	-0.460
POLD2	0	-0.020	0.200				0.123
RFC5	0	0.500	-0.920
RFC5	0	0.500	-0.920	-1.112	-0.547	0.316	-0.391	0.586
MSH3	0	0.890	-0.360	-0.771	0.719	0.629	0.421	0.240
PMS2	0	0.410	-0.450
RFC3	0	0.010	-0.490	0.265	-0.461	0.387	0.658	0.371
RFC4	0	1.100	-0.890	-0.721	-0.389	0.425	-0.194	0.037
EXO1	0	0.890	-0.810

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
EXO1	Phosphorylation	S598		0.826	_TIS(ph)PPTLGTLR_
LIG1	Phosphorylation	S49		0.101	_EWNGVVSES(ph)DSPVK_
LIG1	Phosphorylation	S51	0.145	-0.066	_EWNGVVSESDS(ph)PVK_
LIG1	Phosphorylation	S66	0.671	0.408	_VLGS(ph)EGEEEDEALSPAK_
LIG1	Phosphorylation	S76	-0.083	0.108	_VLGSEGEEEDEALS(ph)PAK_
LIG1	Phosphorylation	S88		1.273	_GQKPALDCS(ph)QVSPPRPATSPENNASLSDTSPMDSSPSGIPK_
LIG1	Phosphorylation	S141	0.697	0.877	_TIQEVLEEQS(ph)EDEDREAK_
LIG1	Phosphorylation	T182	-0.768	-0.709	_EGEDGDQPT(ph)TPPKPLK_
LIG1	Phosphorylation	T183	-0.923	-0.825	_EGEDGDQPTT(ph)PPKPLK_
LIG1	Phosphorylation	T195	0.021	0.224	_AET(ph)PTESVS(ph)EPEVATK_
LIG1	Phosphorylation	T197	0.441	0.125	_AETPT(ph)ESVSEPEVATK_
LIG1	Phosphorylation	S199		0.721	_AET(ph)PTES(ph)VSEPEVATK_
LIG1	Phosphorylation	S201	-0.213	0.070	_AET(ph)PTESVS(ph)EPEVATK_
MSH2	Ubiquitylation	K212		-0.233	_ECVLPGGETAGDMGK(gl)LR_
MSH2	Ubiquitylation	K249	0.461		_K(gl)GEQMNSAVLPEMENQVAVSSLSAVIK_
MSH2	Ubiquitylation	K347		2.867	_LVNQWIK(gl)QPLMDK_
MSH2	Ubiquitylation	K531	1.040		_VTCKEEK(gl)VLR_
MSH2	Ubiquitylation	K555		0.164	_FTNSK(gl)LTSLNEEYTK_
MSH2	Ubiquitylation	K635		-0.376	_IILK(gl)ASR_
MSH6	Phosphorylation	S41	-0.708	-0.948	_AAAAPGAS(ph)PSPGGDAAWSEAGPGPRPLAR_
MSH6	Phosphorylation	S43	0.319	-0.234	_AAAAPGASPS(ph)PGGDAAWSEAGPGPR_
MSH6	Phosphorylation	S137	0.203	0.359	_VHVQFFDDS(ph)PTR_
MSH6	Phosphorylation	T139	0.209		_VHVQFFDDSPT(ph)R_
MSH6	Phosphorylation	S227	-0.199	-0.192	_SEEDNEIES(ph)EEEVQPK_
MSH6	Ubiquitylation	K334		0.193	_QATSISSETK(gl)NTLR_
MSH6	Ubiquitylation	K476	1.536	0.184	_YSDSLVQK(gl)GYK_
MSH6	Ubiquitylation	K519	2.264	0.186	_IITK(gl)GTQTYSVLEGDPSENYSK_
MSH6	Ubiquitylation	K728	0.082	-0.280	_SGAIFTK(gl)AYQR_
MSH6	Ubiquitylation	K771	-0.582	-1.069	_VDTCHTPFGK(gl)R_
MSH6	Phosphorylation	S830	0.130	1.666	_IHNVGS(ph)PLK_
MSH6	Ubiquitylation	K852		-0.044	_AIMYEETTYSK(gl)K_
MSH6	Ubiquitylation	K853		-0.044	_AIMYEETTYSK(gl)K_
MSH6	Ubiquitylation	K896		-0.342	_QVISLQTK(gl)NPEGR_
MSH6	Ubiquitylation	K997		-0.863	_NLPEEYELK(gl)STK_
MSH6	Ubiquitylation	K1009		-0.817	_YWTK(gl)TIEK_
MSH6	Ubiquitylation	K1030	0.394	-0.156	_DVSLK(gl)DCMR_
MSH6	Ubiquitylation	K1240		-0.672	_ELAETIK(gl)CR_
MSH6	Ubiquitylation	K1291		0.633	_FIK(gl)GACPK_
MSH6	Ubiquitylation	K1296		-1.142	_GACPK(gl)SYGFNAAR_
MSH6	Ubiquitylation	K1315		-1.738	_LANLPEEVIQK(gl)GHR_
MSH6	Ubiquitylation	K1325		-0.190	_EFEK(gl)MNQSLR_
PCNA	Ubiquitylation	K13	0.209	2.207	_LVQGSILK(gl)K_
PCNA	Ubiquitylation	K14	0.233	2.833	_LVQGSILKK(gl)_
PCNA	Ubiquitylation	K80	0.570	1.579	_ILK(gl)CAGNEDIITLR_
PCNA	Ubiquitylation	K164	2.309	2.671	_DLSHIGDAVVISCAK(gl)DGVK_
PCNA	Ubiquitylation	K168	2.484	2.645	_DLSHIGDAVVISCAKDGVK(gl)_
PCNA	Ubiquitylation	K248	0.226	0.515	_IADMGHLK(gl)YYLAPK_
PMS2	Ubiquitylation	K146	-0.403		_IIQK(gl)TPYPRPR_
POLD1	Ubiquitylation	K414		-1.315	_AQTLK(gl)VQTFPFLGR_
POLD1	Ubiquitylation	K439		-1.108	_DSSFQSK(gl)QTGRR_
POLD1	Ubiquitylation	K447		-1.286	_DTK(gl)VVSMVGR_
POLD1	Ubiquitylation	K554		-0.798	_GQQVK(gl)VVSQLLR_
POLD1	Ubiquitylation	K674	-1.082	-1.843	_TPTGDEFVK(gl)TSVR_
POLD1	Ubiquitylation	K758		-0.638	_TK(gl)QLVESK_
POLD1	Ubiquitylation	K853	-0.080	-1.776	_MDCK(gl)GLEAVR_
POLD1	Ubiquitylation	K911	-0.089	-0.915	_IDISQLVITK(gl)ELTR_
POLD1	Ubiquitylation	K923		-2.496	_AASDYAGK(gl)QAHVELAER_
POLD1	Ubiquitylation	K1033	0.475	-0.930	_VGGLLAFAK(gl)R_
POLD1	Ubiquitylation	K1065	-0.208		_ESELYQK(gl)EVSHLNALEER_
POLD2	Phosphorylation	S15		-1.104	_AHTLLS(ph)PPSANNATFAR_
POLD2	Ubiquitylation	K81		-0.936	_AQQHWGSGVGVKK(gl)_
POLD2	Ubiquitylation	K145		0.215	_LK(gl)GTIDVSK_
POLD2	Ubiquitylation	K267	-0.443	-0.428	_K(gl)TQAASVEAVK_
POLD3	Phosphorylation	S307	0.831	0.828	_VALS(ph)DDETKETENMR_
RFC1	Phosphorylation	S156	-0.050	0.188	_NKPLS(ph)PIK_
RFC1	Phosphorylation	T161	2.131	1.586	_NKPLS(ph)PIKLT(ph)PTSVLDYFGTGSVQR_
RFC1	Phosphorylation	T163		1.551	_NKPLS(ph)PIKLTPT(ph)SVLDYFGTGSVQR_
RFC1	Phosphorylation	S190	2.756	2.241	_ELS(ph)QNTDESGLNDEAIAK_
RFC1	Ubiquitylation	K240		0.991	_TLAMLDEEPKTKK(gl)_
RFC1	Ubiquitylation	K271	0.551		_VK(gl)TAQVSDERK_
RFC1	Phosphorylation	S368	0.431	0.440	_KESVS(ph)PEDSEK_
RFC1	Ubiquitylation	K436	-0.227		_YGGK(gl)VTGNVSK_
RFC1	Ubiquitylation	K498	0.781		_SKYEIAVETEMK(gl)K_
RFC1	Ubiquitylation	K499	0.781		_SKYEIAVETEMK(gl)K_
RFC3	Ubiquitylation	K66	-1.522		_ELYGVGVEK(gl)LR_
RFC3	Ubiquitylation	K80	-1.498	-2.261	_IEHQTITTPSKK(gl)_
RFC3	Ubiquitylation	K154	-1.667	-0.110	_TMEK(gl)YMSTCR_
RFC3	Ubiquitylation	K170	-1.470	-0.431	_LILCCNSTSK(gl)VIPPIR_
RFC3	Ubiquitylation	K202	-0.332	-0.849	_K(gl)EGLNLPSQLAHR_
RFC3	Ubiquitylation	K225		-0.218	_K(gl)ALLMCEACR_
RFC4	Ubiquitylation	K205	0.306		_FKPLSDK(gl)IQQQR_
RFC4	Ubiquitylation	K217	-0.818		_LLDIAKK(gl)_
RFC4	Ubiquitylation	K240	0.204		_K(gl)AITFLQSATR_
RFC5	Ubiquitylation	K16	0.039	-0.820	_QQEQPAATK(gl)IR_
RFC5	Ubiquitylation	K270		0.495	_NITELK(gl)TLK_
RPA1	Ubiquitylation	K163	2.827	4.085	_AYGASK(gl)TFGK_
RPA1	Ubiquitylation	K167	3.009	3.243	_TFGK(gl)AAGPSLSHTSGGTQSK_
RPA1	Ubiquitylation	K183	0.925		_AAGPSLSHTSGGTQSK(gl)VVPIASLTPYQSK_
RPA1	Ubiquitylation	K263	-1.803		_GTLK(gl)IANK_
RPA1	Ubiquitylation	K267	2.751		_IANK(gl)QFTAVK_
RPA1	Ubiquitylation	K331	3.112	4.066	_SYEDATK(gl)ITVR_
RPA1	Ubiquitylation	K410	2.458		_SLSVLSSSTIIANPDIPEAYK(gl)LR_
RPA1	Ubiquitylation	K489	0.465	2.335	_K(gl)VIDQQNGLYR_
RPA1	Ubiquitylation	K588	-0.055		_IK(gl)ATVMDVKPVDYR_
RPA1	Ubiquitylation	K595	1.201		_ATVMDVK(gl)PVDYR_
RPA2	Ubiquitylation	K85	0.693		_HAEK(gl)APTNIVYK_
RPA2	Ubiquitylation	K235	1.339		_NQLK(gl)HMSVSSIK_
RPA3	Ubiquitylation	K33	0.794		_LEK(gl)IHPTGK_
RPA3	Ubiquitylation	K39	1.508	1.875	_IHPTGK(gl)MFILSDGEGK_
SSBP1	Ubiquitylation	K103		0.616	_DVAYQYVK(gl)K_
SSBP1	Ubiquitylation	K104		0.616	_DVAYQYVK(gl)K_