RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
CLTA	2	-0.050	0.210
CLTA	2	-0.050	0.210		-1.163	-0.046
CSNK2A2	1	-2.450	5.260	1.102	-0.224	1.364	-0.368	-0.150
MAP2K1	1	-1.590	2.780
RPS6KA3	1	-1.550	2.890
AP2B1	0	0.890	-0.970
AP2B1	0	0.890	-0.970	-0.267	0.203	0.287	0.311	0.233
AP2S1	0	-0.210	0.500	-0.049	0.539	0.830	0.375
RPS6KA6	0	-1.250	1.770
FGFR1	0	0.210	0.150
NRP1	0	0.880	-0.670				0.909	0.353
CSNK2A1	0	0.050	-0.020	0.030	-0.550	1.362	0.022	-0.045
MAPK3	0
SH3GL2	0	0.310	-0.450
RPS6KA1	0	-0.160	-0.660
RPS6KA1	0	-0.160	-0.660
MAP2K2	0	-0.610	0.080
MAP2K2	0	-0.610	0.080
RAC1	0	-0.580	1.580	0.486			-0.364	-0.568
ITGAV	0			-0.297			-0.090	0.262
CLTC	0	0.350	-0.220	-0.538	-0.243	-0.478	0.375	0.284
EGFR	0	-0.580	0.520				0.513	0.090
PAK1	0	1.190	-0.630
ITGB1	0	0.390	-0.650				0.101	-0.036
AP2M1	0	-1.250	2.200	-0.363	0.794	-0.187	0.544	0.370
AP2M1	0	-1.250	2.200
ITGA5	0	0.320	-0.520				0.858	0.617
AP2A2	0	-1.330	2.130	1.006	0.165	0.468	0.244	0.392
AP2A1	0	0.510	-1.060	0.414	0.086	0.168	-0.002	0.179
CSNK2B	0	1.680	-0.760	0.254	-0.316	1.419	-0.407	-0.001

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
AP2A1	Phosphorylation	S655		-1.574	_DPSSNDINGGM(ox)EPTPSTVSTPS(ph)PSADLLGLR_
AP2A1	Ubiquitylation	K880	-0.136		_WK(gl)QLSLPQQEAQK_
AP2A2	Ubiquitylation	K6	-0.477	0.972	_PAVSK(gl)GDGMR_
AP2A2	Ubiquitylation	K616	-0.123		_ESSILAKLK(gl)_
AP2A2	Ubiquitylation	K631	-0.267	-0.317	_KGPSTVTDLEDTK(gl)R_
AP2B1	Ubiquitylation	K5	0.145	0.310	_(ac)TDSK(gl)YFTTNK_
AP2B1	Ubiquitylation	K12	0.255		_K(gl)GEIFELK_
AP2B1	Ubiquitylation	K117	-0.547		_VDK(gl)ITEYLCEPLRK_
AP2B1	Ubiquitylation	K131	0.324	-0.027	_CLK(gl)DEDPYVRK_
AP2B1	Ubiquitylation	K733		-0.273	_AVWLPAVK(gl)AK_
AP2B1	Ubiquitylation	K735	-0.839	-0.273	_AVWLPAVKAK(gl)_
AP2M1	Ubiquitylation	K249	0.386	0.460	_IVIEK(gl)QGK_
AP2M1	Ubiquitylation	K263	-0.058	-0.236	_SGK(gl)QSIAIDDCTFHQCVR_
AP2M1	Ubiquitylation	K281	-0.401	0.214	_LSK(gl)FDSER_
AP2M1	Ubiquitylation	K306	-2.014	-0.836	_TTK(gl)DIILPFR_
AP2M1	Ubiquitylation	K337	-1.115		_SNFK(gl)PSLLAQK_
AP2M1	Ubiquitylation	K364	-1.253		_IPTPLNTSGVQVICMK(gl)GK_
AP2S1	Ubiquitylation	K45	-1.058	-0.297	_DAK(gl)HTNFVEFR_
AP2S1	Ubiquitylation	K130	-1.793	0.099	_ETSQTK(gl)VLK_
CLTA	Phosphorylation	S105	1.262	1.599	_LQS(ph)EPESIRK_
CLTA	Ubiquitylation	K223	-0.282	0.457	_LCDFNPK(gl)SSK_
CLTA	Ubiquitylation	K226	-0.199	1.848	_LCDFNPKSSK(gl)_
CLTA	Ubiquitylation	K242	0.149		_SVLISLK(gl)QAPLVH_
CLTC	Ubiquitylation	K83	0.714		_VIALK(gl)AGK_
CLTC	Ubiquitylation	K86		0.631	_VIALKAGK(gl)_
CLTC	Ubiquitylation	K389	-1.051	-0.085	_VAANAPK(gl)GILR_
CLTC	Phosphorylation	T394	-0.123	0.181	_GILRT(ph)PDTIRR_
CLTC	Ubiquitylation	K506		0.267	_IVLYAK(gl)K_
CLTC	Ubiquitylation	K507	0.050	0.267	_IVLYAKK(gl)_
CLTC	Ubiquitylation	K619	-0.177	0.475	_AHIAQLCEK(gl)AGLLQR_
CLTC	Ubiquitylation	K737	-0.435	-0.298	_YIQAACK(gl)TGQIK_
CLTC	Ubiquitylation	K742	0.005	0.082	_TGQIK(gl)EVER_
CLTC	Ubiquitylation	K851		-0.859	_GQFSTDELVAEVEK(gl)R_
CLTC	Ubiquitylation	K911	-1.282		_YCEK(gl)RDPHLACVAYER_
CLTC	Ubiquitylation	K1118	-0.674	-0.765	_AQLQK(gl)GMVK_
CLTC	Ubiquitylation	K1209		-0.791	_CYDEK(gl)MYDAAK_
CLTC	Ubiquitylation	K1443	-2.089	-0.019	_VK(gl)QLPLVKPYLR_
CLTC	Ubiquitylation	K1449		-2.307	_QLPLVK(gl)PYLR_
CLTC	Ubiquitylation	K1516		-0.990	_IAAYLFK(gl)GNNR_
CLTC	Ubiquitylation	K1609	-0.714		_EYLTK(gl)VDKLDASESLR_
CSNK2A1	Ubiquitylation	K71	0.008		_ILK(gl)PVKK_
CSNK2A1	Ubiquitylation	K329	-0.661	-0.889	_EAMEHPYFYTVVK(gl)DQAR_
CSNK2B	Phosphorylation	S224	0.032	0.181	_IHPM(ox)AYQLQLQAAS(ph)NFKSPVK_
CSNK2B	Phosphorylation	S228	0.032	-0.025	_IHPM(ox)AYQLQLQAASNFKS(ph)PVK_
CSNK2B	Ubiquitylation	K231		-1.221	_SPVK(gl)TIR_
EGFR	Phosphorylation	T693	0.486	-0.139	_ELVEPLT(ph)PSGEAPNQALLR_
EGFR	Phosphorylation	S991		-0.041	_MHLPS(ph)PTDSNFYR_
FGFR1	Ubiquitylation	K510	1.047	-0.221	_VTK(gl)VAVK_
ITGA5	Phosphorylation	S127	0.200	0.067	_LLESSLSS(ph)SEGEEPVEYK_
ITGA5	Phosphorylation	S128	-0.087		_LLESSLSSS(ph)EGEEPVEYK_
ITGAV	Ubiquitylation	K233		0.373	_YDPNVYSIK(gl)YNNQLATR_
ITGAV	Ubiquitylation	K360		0.294	_ASGDFQTTK(gl)LNGFEVFAR_
ITGAV	Ubiquitylation	K923		0.636	_GK(gl)SAILYVK_
ITGB1	Ubiquitylation	K774	0.402		_MNAK(gl)WDTGENPIYK_
ITGB1	Ubiquitylation	K784	-0.172	0.350	_WDTGENPIYK(gl)SAVTTVVNPK_
ITGB1	Ubiquitylation	K794	0.755	0.604	_SAVTTVVNPK(gl)YEGK_
MAP2K1	Ubiquitylation	K192	-0.205	-0.241	_DVK(gl)PSNILVNSR_
MAP2K1	Phosphorylation	S385		0.066	_RSDAEEVDFAGWLCSTIGLNQPS(ph)TPTHAAGV_
MAP2K1	Phosphorylation	T386		0.377	_RSDAEEVDFAGWLCSTIGLNQPST(ph)PTHAAGV_
MAP2K2	Phosphorylation	S23	0.873	0.258	_RKPVLPALTINPTIAEGPS(ph)PTSEGASEANLVDLQK_
MAP2K2	Phosphorylation	T25		0.439	_RKPVLPALTINPTIAEGPSPT(ph)SEGASEANLVDLQK_
MAP2K2	Ubiquitylation	K192	-0.205	-0.241	_DVK(gl)PSNILVNSR_
MAP2K2	Phosphorylation	S293		-0.361	_ELEAIFGRPVVDGEEGEPHS(ph)ISPR_
MAP2K2	Phosphorylation	S295	-0.234	0.026	_ELEAIFGRPVVDGEEGEPHSIS(ph)PR_
MAP2K2	Phosphorylation	T394	0.570	0.158	_LNQPGT(ph)PTR_
MAPK3	Phosphorylation	Y204	-0.807	-2.487	_IADPEHDHTGFLTEY(ph)VATR_
MAPK3	Ubiquitylation	K289		-0.608	_NYLQSLPSKTK(gl)_
PAK1	Phosphorylation	S174	-1.439	-0.597	_AVSETPAVPPVS(ph)EDEDDDDDDATPPPVIAPRPEHTK_
PAK1	Phosphorylation	T212		0.312	_SVIEPLPVT(ph)PTR_
PAK1	Phosphorylation	T219	-0.560	-0.962	_DVAT(ph)SPISPTENNTT(ph)PPDALTR_
PAK1	Phosphorylation	S220	-0.916	-0.774	_DVATS(ph)PISPTENNTTPPDALTR_
PAK1	Phosphorylation	S223	1.033	0.153	_DVATSPIS(ph)PTENNTTPPDALTR_
PAK1	Phosphorylation	T225	-1.278		_DVATSPISPT(ph)ENNTTPPDALTR_
PAK1	Phosphorylation	T230	-1.418	-1.502	_DVATSPISPTENNTT(ph)PPDALTR_
RAC1	Ubiquitylation	K115	-1.745	-0.215	_AK(gl)WYPEVR_
RAC1	Ubiquitylation	K142	0.492		_LDLRDDK(gl)DTIEK_
RAC1	Ubiquitylation	K152	0.099	-0.292	_K(gl)LTPITYPQGLAMAK_
RAC1	Ubiquitylation	K166	-0.981	-0.655	_LTPITYPQGLAMAK(gl)EIGAVK_
RAC1	Ubiquitylation	K172	1.026	0.412	_EIGAVK(gl)YLECSALTQR_
RAC1	Ubiquitylation	K185	-0.113	0.578	_GLK(gl)TVFDEAIR_
RAC1	Ubiquitylation	K202	-1.379	-1.447	_AVLCPPPVK(gl)KR_
RAC1	Ubiquitylation	K203	-1.708	-1.447	_AVLCPPPVKK(gl)_
RPS6KA1	Phosphorylation	S227	0.363	0.496	_AYS(ph)FCGTVEYM(ox)APEVVNR_
RPS6KA1	Phosphorylation	T231	0.315		_KAYSFCGT(ph)VEYMAPEVVNR_
RPS6KA1	Ubiquitylation	K316		-1.156	_LGSGPDGAEEIK(gl)R_
RPS6KA1	Phosphorylation	T359	-0.149	-0.339	_T(ph)PKDSPGIPPSAGAHQLFR_
RPS6KA1	Phosphorylation	S363	-0.711	-0.697	_TPKDS(ph)PGIPPSAGAHQLFR_
RPS6KA1	Ubiquitylation	K566		-0.152	_ICDFGFAK(gl)QLR_
RPS6KA3	Phosphorylation	S227	0.363	0.496	_AYS(ph)FCGTVEYM(ox)APEVVNR_
RPS6KA3	Phosphorylation	T231	0.315		_KAYSFCGT(ph)VEYMAPEVVNR_
RPS6KA3	Ubiquitylation	K322	-0.076	-0.376	_LGAGPDGVEEIK(gl)R_
RPS6KA3	Phosphorylation	T365	-0.892	-1.003	_T(ph)PKDSPGIPPSANAHQLFR_
RPS6KA3	Phosphorylation	S369	-0.621	-0.862	_TPKDS(ph)PGIPPSANAHQLFR_
RPS6KA3	Ubiquitylation	K566		-0.152	_ICDFGFAK(gl)QLR_
RPS6KA3	Phosphorylation	S715	-0.923	-0.880	_NQS(ph)PVLEPVGR_
RPS6KA6	Phosphorylation	S227	0.363	0.496	_AYS(ph)FCGTVEYM(ox)APEVVNR_
RPS6KA6	Phosphorylation	T231	0.315		_KAYSFCGT(ph)VEYMAPEVVNR_
RPS6KA6	Ubiquitylation	K566		-0.152	_ICDFGFAK(gl)QLR_
SH3GL2	Ubiquitylation	K7		-0.268	_(ac)SVAGLK(gl)K_
SH3GL2	Ubiquitylation	K8	-0.654		_(ac)SVAGLKK(gl)_
SH3GL2	Ubiquitylation	K177	-0.477	0.450	_QGK(gl)IPDEELR_