RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
SCAF4	3	0.270	-0.290	3.570	2.330	2.699	-0.849	0.197
PCF11	3	-2.050	3.820	0.235
PCF11	3	-2.050	3.820	-1.031	1.582	3.004	-1.330	-0.783
SCAF8	3	-0.040	0.020	2.902	-1.906	1.881	-0.403	0.132
UVSSA	2				3.509	3.693
RPRD1B	1	-0.280	0.460	0.234	1.123	2.253	-0.005	0.487
RPRD1B	1	-0.280	0.460	0.178	1.395	2.538	-0.102	0.850
CLINT1	1	0.090	-0.140	-0.584			-0.316	0.083
GGA3	1	1.320	-0.820
GGA3	1	1.320	-0.820
RPRD1A	1	-1.170	2.460	0.234	1.123	2.253	-0.005	0.487
EPN3	0	-0.820	0.920	0.286			0.676	0.159
EPN1	0	0.000	-0.210	0.286			0.676	0.159
SNAP91	0						0.221	0.666
EPN2	0	-0.550	0.310
EPN2	0	-0.550	0.310
PICALM	0	0.890	-0.980				0.221	0.666
PICALM	0	0.890	-0.980
CHERP	0	-0.490	1.010	0.253	-0.239	0.275	0.284	0.212
GGA1	0	1.030	-0.880
TOM1	0	0.180	0.010	-0.781
STAM2	0	-0.510	0.650
HIP1R	0	-0.280	1.350					0.541
TOM1L1	0	-0.380	0.180
U2SURP	0	-0.960	0.990	-0.013	-0.374	-0.036	-0.060	0.277
ENTHD2	0	-0.770	0.180
TOM1L2	0
HGS	0	0.020	0.300	-0.211			0.737	0.264

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
CHERP	Ubiquitylation	K177	0.538	1.097	_DAISAGK(gl)NWMFSNAK_
CHERP	Ubiquitylation	K901	0.763		_NK(gl)SYSFIAR_
CLINT1	Ubiquitylation	K6	0.944	0.734	_(ac)MLNMWK(gl)VR_
CLINT1	Ubiquitylation	K183		0.133	_SK(gl)WDEEWDKNK_
CLINT1	Ubiquitylation	K200	1.330	0.380	_SAFPFSDK(gl)LGELSDK_
CLINT1	Ubiquitylation	K207	0.681	0.218	_LGELSDK(gl)IGSTIDDTISK_
CLINT1	Ubiquitylation	K218	3.052	1.316	_IGSTIDDTISK(gl)FR_
CLINT1	Phosphorylation	S299	0.178	0.644	_TIDLGAAAHYTGDKAS(ph)PDQNASTHTPQSSVK_
CLINT1	Phosphorylation	T308	-0.947	-0.444	_ASPDQNASTHT(ph)PQSSVK_
CLINT1	Ubiquitylation	K314	0.979	-1.156	_ASPDQNASTHTPQSSVK(gl)TSVPSSK_
CLINT1	Ubiquitylation	K467	1.885	0.486	_SQNTDMVQK(gl)SVSK_
CLINT1	Ubiquitylation	K625	2.083	0.163	_QDAFANFANFSK(gl)_
ENTHD2	Phosphorylation	S356	1.035	0.662	_HFEASCGQLS(ph)PAR_
EPN1	Ubiquitylation	K97	-0.214	0.731	_VSQQCK(gl)ENMYAVQTLK_
EPN1	Ubiquitylation	K107	-0.288	1.227	_ENMYAVQTLK(gl)DFQYVDR_
EPN1	Ubiquitylation	K117	0.237		_DFQYVDRDGK(gl)DQGVNVR_
EPN1	Ubiquitylation	K128	0.126		_AK(gl)QLVALLRDEDR_
EPN1	Phosphorylation	S417	0.164		_TALPTS(ph)GSSAGELELLAGEVPAR_
EPN1	Phosphorylation	S420	-0.776	-0.436	_TALPTSGSS(ph)AGELELLAGEVPAR_
EPN1	Phosphorylation	S435	0.801	0.890	_S(ph)PGAFDMSGVR_
EPN1	Phosphorylation	T470	-1.386	-1.782	_T(ph)PESFLGPNAALVDLDSLVSRPGPTPPGAK_
EPN1	Phosphorylation	S473	-0.700	-0.430	_KTPES(ph)FLGPNAALVDLDSLVSR_
EPN2	Ubiquitylation	K135	0.492		_QLVALLK(gl)DEER_
EPN2	Phosphorylation	S172		-0.027	_GS(ph)SQPNLSTSHSEQEYGK_
EPN2	Phosphorylation	S173	0.271	-0.203	_GSS(ph)QPNLSTSHSEQEYGK_
EPN2	Phosphorylation	S192	-0.581	-0.207	_AGGS(ph)PASYHGSTSPR_
EPN3	Ubiquitylation	K97	-0.214	0.731	_VSQQCK(gl)ENMYAVQTLK_
EPN3	Ubiquitylation	K107	-0.288	1.227	_ENMYAVQTLK(gl)DFQYVDR_
EPN3	Ubiquitylation	K117	0.237		_DFQYVDRDGK(gl)DQGVNVR_
EPN3	Ubiquitylation	K128	0.126		_AK(gl)QLVALLRDEDR_
EPN3	Phosphorylation	S417	0.164		_TALPTS(ph)GSSAGELELLAGEVPAR_
EPN3	Phosphorylation	S420	-0.776	-0.436	_TALPTSGSS(ph)AGELELLAGEVPAR_
EPN3	Phosphorylation	S435	0.801	0.890	_S(ph)PGAFDMSGVR_
EPN3	Phosphorylation	T470	-1.386	-1.782	_T(ph)PESFLGPNAALVDLDSLVSRPGPTPPGAK_
EPN3	Phosphorylation	S473	-0.700	-0.430	_KTPES(ph)FLGPNAALVDLDSLVSR_
GGA1	Ubiquitylation	K118	-1.027	0.051	_VVSPK(gl)YLGSR_
GGA1	Ubiquitylation	K191	-0.968		_NVIFEDEEK(gl)SK_
GGA1	Ubiquitylation	K193	-0.968		_NVIFEDEEK(gl)SK_
GGA1	Ubiquitylation	K200	-0.112	-0.638	_LLK(gl)SSHPEDLR_
GGA1	Ubiquitylation	K215	-1.131	-0.524	_LIK(gl)EMVQEDQKR_
GGA1	Ubiquitylation	K223	-0.190	0.412	_EMVQEDQK(gl)R_
GGA3	Ubiquitylation	K100	-0.181	-0.013	_VVSPK(gl)YLGDR_
GGA3	Phosphorylation	S159	-1.676	-1.492	_TLIPS(ph)PPPRPK_
GGA3	Ubiquitylation	K176	-0.101		_NPVFDDEEKSK(gl)LLAK_
GGA3	Ubiquitylation	K180	-0.258	0.226	_LLAK(gl)LLK_
GGA3	Ubiquitylation	K185	-0.073	-0.327	_SK(gl)NPDDLQEANK_
GGA3	Ubiquitylation	K195	0.623	-0.266	_SKNPDDLQEANK(gl)LIK_
GGA3	Ubiquitylation	K198	-0.091	0.421	_LIK(gl)SMVKEDEAR_
GGA3	Ubiquitylation	K202	0.681	2.639	_SMVK(gl)EDEAR_
GGA3	Phosphorylation	S425	-0.079		_EQS(ph)DLDFFSPR_
HGS	Ubiquitylation	K126	0.088	0.464	_YK(gl)VVQDTYQIMK_
HGS	Ubiquitylation	K192	0.015	0.751	_ACGQIFCGK(gl)CSSK_
HGS	Ubiquitylation	K202	-0.163	0.558	_YSTIPK(gl)FGIEK_
HGS	Ubiquitylation	K207	-0.193	0.798	_FGIEK(gl)EVR_
HGS	Ubiquitylation	K283	-0.826	-0.270	_QK(gl)STYTSYPK_
HGS	Ubiquitylation	K337	0.097		_NYWEK(gl)KQEEAR_
HGS	Ubiquitylation	K473	-0.154		_LYYEGLQDK(gl)LAQIR_
HGS	Ubiquitylation	K513	-0.289		_QIQLAQK(gl)LEIMR_
HGS	Ubiquitylation	K520	0.211	1.230	_QK(gl)KQEYLEVQR_
HGS	Ubiquitylation	K521	-1.344	1.230	_K(gl)QEYLEVQR_
HGS	Ubiquitylation	K551	-0.260	0.554	_LEQQK(gl)QTVQM(ox)R_
HIP1R	Ubiquitylation	K5	-0.561	-0.282	_(ac)MNSIK(gl)NVPAR_
PCF11	Phosphorylation	S494	0.108	0.338	_SPIIHS(ph)PK_
PCF11	Phosphorylation	S705	-0.513	-0.572	_EEQRS(ph)PFNDRFPLK_
PCF11	Phosphorylation	S800	0.255	0.405	_RLS(ph)PISGSR_
PCF11	Ubiquitylation	K1278	0.074		_LLK(gl)TGILK_
PCF11	Phosphorylation	T1530	-0.702	-0.561	_IDT(ph)PPACTEESIATPSEIK_
PICALM	Ubiquitylation	K210	-0.364	0.811	_YLNEK(gl)AVSYR_
PICALM	Phosphorylation	T294		-0.800	_KPHTSLT(ph)TAASPVSTSAGGIM(ox)TAPAIDIFSTPSSSNSTSK_
RPRD1A	Phosphorylation	S156	-0.063	-0.120	_VDENENCSSLGS(ph)PSEPPQTLDLVR_
RPRD1A	Phosphorylation	S158	-0.243	-0.235	_VDENENCSSLGSPS(ph)EPPQTLDLVR_
RPRD1B	Ubiquitylation	K11	0.621		_(ac)SSFSESALEK(gl)K_
RPRD1B	Ubiquitylation	K12		0.419	_(ac)SSFSESALEKK(gl)_
RPRD1B	Phosphorylation	S132	-0.334		_LSM(ox)EDS(ph)KSPPPK_
RPRD1B	Phosphorylation	S134	-0.203	0.030	_LSMEDSKS(ph)PPPK_
RPRD1B	Phosphorylation	S156	-0.063	-0.120	_VDENENCSSLGS(ph)PSEPPQTLDLVR_
RPRD1B	Phosphorylation	S158	-0.243	-0.235	_VDENENCSSLGSPS(ph)EPPQTLDLVR_
RPRD1B	Ubiquitylation	K272	-0.212	-0.554	_DVLSEK(gl)EK_
RPRD1B	Ubiquitylation	K274	-0.212	-0.554	_DVLSEK(gl)EK_
SCAF4	Ubiquitylation	K119	0.652		_VLNLWQK(gl)NGVFK_
SCAF4	Phosphorylation	S154	-1.724	-1.792	_IEIIQPLLDM(ox)AAGTSNAAPVAENVTNNEGS(ph)PPPPVK_
SCAF4	Phosphorylation	S656	-0.971	-0.773	_KPENEVAQNGGAETSHTEPVS(ph)PIPK_
SCAF8	Ubiquitylation	K197	0.357		_VLNLWQK(gl)NNVFK_
SCAF8	Ubiquitylation	K620	3.030		_IGSK(gl)VIK_
SCAF8	Phosphorylation	S695	-0.078	0.158	_SSEPVKETVQTTQS(ph)PTPVEK_
SCAF8	Phosphorylation	T697	-0.087		_SSEPVKETVQTTQSPT(ph)PVEK_
SNAP91	Ubiquitylation	K210	-0.364	0.811	_YLNEK(gl)AVSYR_
STAM2	Ubiquitylation	K182	-0.024	-0.067	_AIELSLQEQK(gl)QQHTETK_
STAM2	Ubiquitylation	K189	-0.345	-0.068	_QQHTETK(gl)SLYPSSEIQLNNK_
STAM2	Ubiquitylation	K202	-0.516	-0.231	_SLYPSSEIQLNNK(gl)VAR_
TOM1	Ubiquitylation	K115	-1.954	-1.030	_TILPK(gl)NNPPTIVHDK_
TOM1	Ubiquitylation	K156	-0.534		_K(gl)GLEFPMTDLDMLSPIHTPQR_
TOM1	Phosphorylation	S169		0.684	_GLEFPMTDLDMLS(ph)PIHTPQR_
TOM1	Ubiquitylation	K391	-1.026		_K(gl)EVKYEAPQATDGLAGALDAR_
TOM1	Ubiquitylation	K394	-0.894	-0.078	_EVK(gl)YEAPQATDGLAGALDAR_
TOM1	Phosphorylation	S471		-0.733	_AADRLPNLSS(ph)PSAEGPPGPPSGPAPR_
TOM1L1	Ubiquitylation	K149	-0.037		_EVYLDLVKK(gl)_
TOM1L1	Ubiquitylation	K298		-1.457	_ILEQNK(gl)NQK_
TOM1L1	Ubiquitylation	K301	-1.762	-1.457	_NQK(gl)EATNTTSEPSAPSQDLLDLSPSPR_
TOM1L1	Phosphorylation	S321	0.265	-0.164	_EATNTTSEPSAPSQDLLDLS(ph)PSPR_
TOM1L1	Phosphorylation	S323	-1.219	-1.229	_EATNTTSEPSAPSQDLLDLSPS(ph)PR_
TOM1L2	Ubiquitylation	K106	-1.172	-0.773	_IISPK(gl)NNPPTIVQDK_
TOM1L2	Ubiquitylation	K400	-0.600	0.008	_K(gl)TVTYEDPQAVGGLASALDNRK_
TOM1L2	Ubiquitylation	K469	-2.963		_AK(gl)AAEMVPDLPSPPMEAPAPASNPSGR_
U2SURP	Phosphorylation	S67	-0.879	-0.918	_ESLCDS(ph)PHQNLSRPLLENK_
U2SURP	Phosphorylation	S202	0.734	0.603	_S(ph)NLELFKEELK_
U2SURP	Phosphorylation	S485	0.110	0.458	_LYSILQGDS(ph)PTK_
U2SURP	Ubiquitylation	K760	-0.492		_VAPSK(gl)WEAVDESELEAQAVTTSK_