bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

bioLOGIC Data


Exact search


Query: GGA1

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
GGA1 0 0.300 1.030 -0.880

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
GGA1 Ubiquitylation K223 -0.190 0.412 _EMVQEDQK(gl)R_
GGA1 Ubiquitylation K118 -1.027 0.051 _VVSPK(gl)YLGSR_
GGA1 Ubiquitylation K215 -1.131 -0.524 _LIK(gl)EMVQEDQKR_
GGA1 Ubiquitylation K200 -0.112 -0.638 _LLK(gl)SSHPEDLR_
GGA1 Ubiquitylation K191 -0.968 _NVIFEDEEK(gl)SK_
GGA1 Ubiquitylation K193 -0.968 _NVIFEDEEK(gl)SK_

Background Information for GGA1:


Pubmed-GGA1 »
Uniprot-GGA1 »
Biogrid-GGA1 »
ProteomicsDB-GGA1 »

Tumorportal-GGA1 »
COSMIC-GGA1 »
GenomeRNAi-GGA1 »
Genecards-GGA1


Protein-protein Interactions for GGA1
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait CCDC53 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait GGA1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait GGA2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait SLC38A7 Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in GGA1
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members ENTH_VHS IPR008942 0.96
Category members Clathrin_a/b/g-adaptin_app_Ig IPR008152 0.33
Category members Coatomer/clathrin_app_Ig-like IPR013041 0.18
Category members Clathrin_g-adaptin_app IPR008153 0.04
Category members VHS IPR002014 0
Category members GAT IPR004152 0
Category members VHS_subgr IPR018205 0


Protein complexes (CORUM database) featuring GGA1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring GGA1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0006886 intracellular protein transport Database 2.48
Category members GO Category GO:0016192 vesicle-mediated transport Database 1.1
Category members GO Category GO:0005622 intracellular Database 0.32
Category members GO Category GO:0005794 Golgi apparatus Database 0.27
Category members GO Category GO:0030131 clathrin adaptor complex Database 0.11
Category members GO Category GO:0003674 molecular_function Database 0.08
Category members Pathway Pathway_74 KEGG_LYSOSOME 0 0
Category members GO Category GO:0010008 endosome membrane Database 0
Category members GO Category GO:0045732 positive regulation of protein catabolic process Database 0


.

© Copyright Svejstrup Laboratory 2015