RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
GSK3B	2	1.020	-0.870				-1.128	1.091
MTDH	2	0.690	-0.240				0.222	0.258
BCL10	1	0.000	0.200
TP53BP2	1	1.060	-0.800				-0.399	-0.481
RPS3	1	-0.940	1.360	0.247	-0.394	0.032	-0.254	-0.093
NPM1	1	1.010	-0.750	0.063	-0.066	-0.259
EP300	0	-1.210	1.320	-1.089			-1.694	-0.723
APEX1	0	0.630	-0.180				-0.057	-0.077
PSMA6	0			-0.525	0.954	0.421	0.792	0.604
SETD6	0	-0.570	1.220
DNAJA3	0	-0.010	-0.240	0.786	0.226	-0.161	-0.800	-0.347
ANKRD42	0	0.720	-0.420
TAF4B	0	-0.140	0.170	0.967	0.295	0.068	1.083	0.605
CDKN2A	0	-0.080	-0.260	-0.556		-1.080	-3.270	-1.110
RNF25	0	-0.230	0.130
HIF1AN	0	0.620	-0.310
RELA	0	-1.130	1.600	0.793
BRMS1	0	-0.780	0.690
FAF1	0	0.870	-0.650	0.213
COMMD6	0	0.220	-0.750

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ANKRD42	Ubiquitylation	K248		-0.403	_SGVDPSVTDK(gl)R_
APEX1	Ubiquitylation	K25	-0.227		_GAVAEDGDELRTEPEAKK(gl)_
APEX1	Ubiquitylation	K58	-0.215		_TSPSGK(gl)PATLK_
BCL10	Phosphorylation	S138	1.515	1.393	_SNS(ph)DESNFSEK_
BRMS1	Ubiquitylation	K133		0.186	_NK(gl)YECELQGAK_
COMMD6	Ubiquitylation	K54	0.001		_SLK(gl)YPYVAVMLK_
EP300	Phosphorylation	S1038	-0.672	-0.349	_TEIKEEEDQPSTSATQSS(ph)PAPGQSK_
EP300	Phosphorylation	S1726	0.994	0.627	_LGLGLDDESNNQQAAATQS(ph)PGDSRR_
EP300	Phosphorylation	S2328	-1.092	0.725	_PQSQPPHSSPS(ph)PR_
FAF1	Ubiquitylation	K139	-0.732		_QILENELQIPVSK(gl)MLLK_
FAF1	Ubiquitylation	K143	-0.325	0.510	_MLLK(gl)GWK_
FAF1	Ubiquitylation	K146	0.008	0.988	_GWK(gl)TGDVEDSTVLK_
FAF1	Ubiquitylation	K157	-0.570	-0.411	_TGDVEDSTVLK(gl)SLHLPK_
FAF1	Ubiquitylation	K221	0.454	0.951	_EYNLNFSGSSTIQEVK(gl)R_
FAF1	Phosphorylation	T580	-0.344		_IRT(ph)PSGEFLER_
FAF1	Phosphorylation	S582	0.205	0.092	_TPS(ph)GEFLER_
GSK3B	Phosphorylation	S9	-0.483	0.010	_TTS(ph)FAESCKPVQQPSAFGSMK_
GSK3B	Ubiquitylation	K85		-0.204	_LCDSGELVAIK(gl)K_
GSK3B	Ubiquitylation	K86		-0.204	_LCDSGELVAIK(gl)K_
GSK3B	Phosphorylation	S215	0.296	0.477	_GEPNVS(ph)YICSR_
GSK3B	Phosphorylation	Y216	0.356	0.376	_GEPNVSY(ph)ICSR_
GSK3B	Phosphorylation	T390	2.800	2.527	_IQAAAST(ph)PTNATAASDANTGDR_
HIF1AN	Ubiquitylation	K106		0.161	_FLYYDEK(gl)K_
HIF1AN	Ubiquitylation	K115	-0.227	-0.105	_MANFQNFK(gl)PR_
MTDH	Phosphorylation	T143		-0.168	_TVEVAEGEAVRT(ph)PQSVTAK_
MTDH	Phosphorylation	S298	3.215	2.229	_LSSQIS(ph)AGEEK_
MTDH	Phosphorylation	S308	-1.181	-0.077	_WNSVS(ph)PASAGK_
MTDH	Phosphorylation	S426	0.024	0.054	_SQEPIPDDQKVS(ph)DDDKEK_
MTDH	Ubiquitylation	K504	-0.009		_TISTSDPAEVLVK(gl)NSQPIK_
MTDH	Phosphorylation	S568	-1.097	-0.503	_SETSWES(ph)PK_
NPM1	Phosphorylation	S4	-0.102	0.205	_(ac)MEDS(ph)MDMDMSPLRPQNYLFGCELK_
NPM1	Phosphorylation	S10	0.493	0.606	_(ac)MEDSMDM(ox)DM(ox)S(ph)PLRPQNYLFGCELK_
NPM1	Phosphorylation	Y67	0.604	0.383	_TVSLGAGAKDELHIVEAEAMNY(ph)EGSPIKVTLATLK_
NPM1	Phosphorylation	S70	0.285	0.333	_TVSLGAGAKDELHIVEAEAMNYEGS(ph)PIK_
NPM1	Phosphorylation	T75	0.611	0.229	_DELHIVEAEAMNYEGSPIKVT(ph)LATLK_
NPM1	Phosphorylation	T78		0.397	_TVSLGAGAKDELHIVEAEAMNYEGSPIKVTLAT(ph)LK_
NPM1	Phosphorylation	S125	0.202	0.017	_CGSGPVHISGQHLVAVEEDAES(ph)EDEEEEDVK_
NPM1	Phosphorylation	S139		-0.611	_LLSIS(ph)GKR_
NPM1	Ubiquitylation	K141	0.568	1.699	_LLSISGK(gl)R_
NPM1	Ubiquitylation	K150	-1.308	0.669	_SAPGGGSK(gl)VPQKK_
NPM1	Ubiquitylation	K202	0.335	0.204	_SIRDTPAK(gl)NAQK_
NPM1	Phosphorylation	S227		0.788	_SKGQES(ph)FKK_
NPM1	Phosphorylation	S243	-0.070	0.063	_GPSS(ph)VEDIK_
NPM1	Ubiquitylation	K248	0.294	1.847	_GPSSVEDIK(gl)AK_
NPM1	Ubiquitylation	K250	0.931	1.267	_AK(gl)MQASIEK_
NPM1	Phosphorylation	S254	-0.677	0.371	_MQAS(ph)IEK_
NPM1	Ubiquitylation	K257	0.236	0.753	_MQASIEK(gl)GGSLPK_
NPM1	Phosphorylation	S260	-0.202	0.203	_GGS(ph)LPKVEAK_
NPM1	Ubiquitylation	K267	0.954	1.794	_VEAK(gl)FINYVK_
PSMA6	Ubiquitylation	K45	-0.348	0.048	_GK(gl)DCAVIVTQK_
PSMA6	Ubiquitylation	K55	-0.129	0.038	_GKDCAVIVTQKK(gl)_
PSMA6	Ubiquitylation	K102	0.229	0.506	_YEAANWK(gl)YK_
PSMA6	Ubiquitylation	K104		0.926	_YEAANWK(gl)YK_
PSMA6	Ubiquitylation	K116	-1.065	-0.664	_YGYEIPVDMLCK(gl)R_
PSMA6	Ubiquitylation	K170	-0.696		_CDPAGYYCGFK(gl)ATAAGVK_
PSMA6	Ubiquitylation	K177	-0.464	-0.324	_ATAAGVK(gl)QTESTSFLEK_
PSMA6	Ubiquitylation	K187	0.017		_QTESTSFLEK(gl)K_
PSMA6	Ubiquitylation	K188	-0.004	-0.098	_QTESTSFLEKK(gl)_
RNF25	Phosphorylation	S450	0.946	0.232	_RES(ph)LGLESK_
RPS3	Ubiquitylation	K7	-0.351	0.640	_(ac)AVQISK(gl)K(gl)R_
RPS3	Ubiquitylation	K8	-0.271	0.892	_(ac)AVQISK(gl)K(gl)R_
RPS3	Ubiquitylation	K10	-0.280	0.954	_K(gl)FVADGIFK_
RPS3	Ubiquitylation	K62	0.377	1.170	_TQNVLGEK(gl)GRR_
RPS3	Ubiquitylation	K75	0.306	0.997	_IRELTAVVQK(gl)R_
RPS3	Ubiquitylation	K90	0.875	0.887	_FGFPEGSVELYAEK(gl)VATR_
RPS3	Ubiquitylation	K132	2.406	1.406	_FIMESGAK(gl)GCEVVVSGK_
RPS3	Ubiquitylation	K141	0.299	1.362	_GCEVVVSGK(gl)LR_
RPS3	Ubiquitylation	K185		1.424	_QGVLGIK(gl)VK_
RPS3	Ubiquitylation	K197	-0.785	0.209	_IMLPWDPTGK(gl)_
RPS3	Ubiquitylation	K202		-0.633	_K(gl)PLPDHVSIVEPK_
RPS3	Phosphorylation	T220	-0.052	-0.022	_DEILPT(ph)TPISEQK_
RPS3	Phosphorylation	T221	-0.107	0.074	_DEILPTT(ph)PISEQK_
RPS3	Ubiquitylation	K230	1.186	-0.281	_GGK(gl)PEPPAM(ox)PQPVPTA_
SETD6	Ubiquitylation	K327		-0.155	_EAALQGTK(gl)TEAER_
TP53BP2	Ubiquitylation	K102	0.149		_SQDPSLK(gl)R_
TP53BP2	Ubiquitylation	K152	0.224		_QQQQIEAQQQLLATK(gl)EQR_
TP53BP2	Ubiquitylation	K224	-0.390		_LVEEIEQMNNLFQQK(gl)QR_
TP53BP2	Ubiquitylation	K234	-0.113		_ELVLAVSK(gl)VEELTR_
TP53BP2	Ubiquitylation	K268	-0.429		_LYK(gl)ELQLR_
TP53BP2	Ubiquitylation	K283	-0.866		_NKLNQEQNAK(gl)LQQQR_
TP53BP2	Ubiquitylation	K303	-0.302		_NSEVAVMDK(gl)R_
TP53BP2	Ubiquitylation	K322	-2.045		_AALQQK(gl)ENLPVSSDGNLPQQAASAPSR_
TP53BP2	Phosphorylation	S480	0.458	0.944	_NQS(ph)SEDILR_
TP53BP2	Phosphorylation	S556	1.443	1.433	_VLLS(ph)PSIPSVGQDQTLSPGSK_
TP53BP2	Phosphorylation	S569		1.774	_VLLS(ph)PSIPSVGQDQTLS(ph)PGSK_
TP53BP2	Phosphorylation	S698	-0.309	-0.362	_IPRPLS(ph)PTK_
TP53BP2	Phosphorylation	T700	-0.449	-0.429	_IPRPLSPT(ph)K_
TP53BP2	Phosphorylation	S737	-0.172	-0.748	_RSS(ph)ITEPEGPNGPNIQK_