RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
VAPB	2	1.440	-0.660				0.042	0.495
VAPB	2	1.440	-0.660			-2.551	0.014	0.056
SPAST	1	-1.590	2.900
CAPZB	1	0.940	-1.150	0.175	0.103	0.384	0.305	-0.428
MAP1S	1	-1.730	2.760	0.153			-0.821	-0.044
PEX14	1	-1.140	1.100				-0.395	0.423
ARL8A	1	-1.930	3.380
HTT	1	-0.200	-0.360	0.632			0.847	0.550
GABARAPL2	0	1.830	-0.990
UXT	0	-1.010	1.010	-0.511
FGF13	0	1.100	-1.060
ARL8B	0	0.400	-0.100	0.105			0.781	-0.457
LRPPRC	0	0.110	-0.740	-0.075	0.032	-0.336	0.525	0.443
BBS4	0	0.310	0.160
RANBP10	0	0.990	-0.810
TBCD	0	0.820	-0.650					1.428
GJA1	0	-0.410	0.430
RACGAP1	0	0.180	0.230				-0.308	-0.006
RACGAP1	0	1.070	-0.710				-0.308	-0.006
NDEL1	0	0.150	-0.130
GABARAP	0	-1.090	2.300

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ARL8A	Ubiquitylation	K141	-0.106	-0.468	_DLPGALDEK(gl)ELIEK_
ARL8B	Ubiquitylation	K114	-0.375		_KVTK(gl)GNVTIK_
ARL8B	Ubiquitylation	K193	0.027	-0.061	_DLPNALDEK(gl)QLIEK_
ARL8B	Ubiquitylation	K198	0.185		_QLIEK(gl)MNLSAIQDR_
BBS4	Ubiquitylation	K28		-0.615	_TQFPVSTESQK(gl)PR_
BBS4	Ubiquitylation	K302		-2.331	_YVAAISCLK(gl)R_
BBS4	Ubiquitylation	K408		-2.242	_NALAQYQEMEK(gl)K_
BBS4	Ubiquitylation	K409		-2.242	_NALAQYQEMEK(gl)K_
CAPZB	Ubiquitylation	K286	0.843	0.715	_LVEDMENK(gl)IR_
CAPZB	Ubiquitylation	K298	0.345	1.035	_STLNEIYFGK(gl)TK_
CAPZB	Ubiquitylation	K300	0.315	1.544	_STLNEIYFGKTK(gl)_
CAPZB	Ubiquitylation	K315		1.983	_SVQTFADK(gl)SK_
CAPZB	Ubiquitylation	K317	0.515	1.983	_SVQTFADKSK(gl)_
FGF13	Ubiquitylation	K57	-0.429	0.063	_AK(gl)CHEIFCCPLK_
FGF13	Phosphorylation	S224	0.090	0.488	_VAMYKEPS(ph)LHDLTEFSR_
GABARAP	Ubiquitylation	K13	-0.569		_FVYKEEHPFEK(gl)R_
GABARAPL2	Ubiquitylation	K20		-0.292	_CVESAK(gl)IR_
GABARAPL2	Ubiquitylation	K24	-0.237	-0.668	_AK(gl)YPDRVPVIVEK_
GJA1	Ubiquitylation	K109	0.099		_LNKK(gl)EEELK_
GJA1	Ubiquitylation	K128	0.209	1.057	_VAQTDGVNVDMHLK(gl)QIEIK_
GJA1	Ubiquitylation	K136	-0.888		_FK(gl)YGIEEHGK_
GJA1	Ubiquitylation	K243	0.152	0.237	_GK(gl)SDPYHATSGALSPAK_
GJA1	Ubiquitylation	K258	-0.280	0.063	_SDPYHATSGALSPAK(gl)DCGSQK_
GJA1	Ubiquitylation	K303	-0.106	0.280	_NYNK(gl)QASEQNWANYSAEQNR_
GJA1	Ubiquitylation	K345		-0.464	_MGQAGSTISNSHAQPFDFPDDNQNSK(gl)K_
GJA1	Ubiquitylation	K346	-1.004	-0.300	_MGQAGSTISNSHAQPFDFPDDNQNSKK(gl)_
GJA1	Phosphorylation	S364		-0.300	_LAAGHELQPLAIVDQRPS(ph)SR_
GJA1	Phosphorylation	S365		-0.300	_LAAGHELQPLAIVDQRPS(ph)SR_
GJA1	Phosphorylation	S372	0.940	1.430	_AS(ph)SRPRPDDLEI_
GJA1	Phosphorylation	S373	0.664	0.467	_ASS(ph)RPRPDDLEI_
HTT	Ubiquitylation	K260		-0.128	_AFIANLK(gl)_
HTT	Phosphorylation	S419	0.595	0.531	_SGS(ph)IVELIAGGGSSCS(ph)PVLSR_
HTT	Phosphorylation	S430	0.402	0.494	_SGSIVELIAGGGSS(ph)CSPVLSR_
HTT	Phosphorylation	S432	0.317	0.640	_SGSIVELIAGGGSSCS(ph)PVLSR_
HTT	Phosphorylation	S1195	-0.222	0.264	_EKEPGEQAS(ph)VPLSPK_
HTT	Phosphorylation	S1199	-0.456	-0.970	_GKEKEPGEQASVPLS(ph)PK_
HTT	Ubiquitylation	K1402	0.169	-0.538	_VSTQLK(gl)TNLTSVTK_
HTT	Phosphorylation	S1874	1.994	1.028	_LLSPQMS(ph)GEEEDSDLAAK_
MAP1S	Ubiquitylation	K73		0.195	_HSATFSSIVK(gl)GQR_
MAP1S	Phosphorylation	S657	0.581	0.452	_LSLS(ph)PLR_
MAP1S	Phosphorylation	S729	-0.146	-0.573	_RS(ph)ASPHDVDLCLVSPCEFEHR_
MAP1S	Phosphorylation	S731	-0.544	-0.325	_SAS(ph)PHDVDLCLVSPCEFEHR_
MAP1S	Phosphorylation	S759	-0.447	-0.410	_AVPMAPAPAS(ph)PGSSNDSSAR_
MAP1S	Phosphorylation	S762	-0.700	-0.363	_AVPMAPAPASPGS(ph)SNDSSAR_
NDEL1	Phosphorylation	S249		-0.120	_S(ph)APSS(ph)PTLDCEK_
NDEL1	Phosphorylation	S253		-0.120	_S(ph)APSS(ph)PTLDCEK_
PEX14	Phosphorylation	S232		1.626	_RQFPPS(ph)PSAPK_
PEX14	Phosphorylation	S234		3.951	_RQFPPSPS(ph)APK_
RACGAP1	Ubiquitylation	K53	0.960		_TDHELGK(gl)YK_
RACGAP1	Ubiquitylation	K60	1.380		_DLLMK(gl)AETER_
RACGAP1	Ubiquitylation	K71	0.352	0.233	_SALDVK(gl)LK_
RACGAP1	Ubiquitylation	K84	0.484	0.846	_NQVDVEIK(gl)RR_
RACGAP1	Ubiquitylation	K95	-0.492		_AEADCEK(gl)LER_
RACGAP1	Ubiquitylation	K199	-2.285	-0.347	_QFVDGPPGPVK(gl)K_
RACGAP1	Ubiquitylation	K200	-0.365	-0.347	_QFVDGPPGPVKK(gl)_
RACGAP1	Phosphorylation	S203	1.255	0.831	_S(ph)IGSAVDQGNESIVAK_
RACGAP1	Ubiquitylation	K292	-0.427		_LHDFVSK(gl)TVIKPESCVPCGK_
RACGAP1	Ubiquitylation	K305	-0.770		_TVIKPESCVPCGK(gl)R_
RACGAP1	Phosphorylation	T342	-1.072	-0.919	_DRCPLPCIPTLIGT(ph)PVK_
RACGAP1	Ubiquitylation	K404	-0.200		_VK(gl)TVPLLSK_
RACGAP1	Ubiquitylation	K490	0.528		_VAQSPHTK(gl)MDVANLAK_
RACGAP1	Phosphorylation	T580	-0.839		_VSLLGPVTT(ph)PEHQLLK_
RACGAP1	Ubiquitylation	K587	-0.985		_VSLLGPVTTPEHQLLK(gl)TPSSSSLSQR_
RACGAP1	Phosphorylation	S590	-0.415	-0.021	_TPS(ph)SSSLSQR_
RACGAP1	Phosphorylation	S591		-0.217	_TPSS(ph)SSLSQR_
RACGAP1	Ubiquitylation	K604	0.953		_STLTK(gl)NTPR_
RANBP10	Phosphorylation	S361		-0.043	_SQDS(ph)YPGSPSLSPR_
RANBP10	Phosphorylation	S369	0.270	0.128	_SQDSYPGSPSLS(ph)PR_
SPAST	Phosphorylation	S268		0.172	_APS(ph)YSGLSMVSGVK_
TBCD	Ubiquitylation	K221	-0.672	-1.403	_FITRPDVK(gl)QSK_
TBCD	Ubiquitylation	K299		-0.144	_LGVK(gl)LVQR_
TBCD	Ubiquitylation	K310		-0.882	_LGLTFLK(gl)PK_
TBCD	Ubiquitylation	K453	0.010	-0.719	_ALTYDEK(gl)R_
TBCD	Ubiquitylation	K691		-1.291	_LSLSK(gl)MPFR_
TBCD	Ubiquitylation	K820	-0.089	-0.799	_DGLK(gl)AIAR_
TBCD	Ubiquitylation	K913		0.550	_IMCCVAQQASEK(gl)IDR_
TBCD	Ubiquitylation	K1076		-0.225	_LLALCK(gl)K_
TBCD	Ubiquitylation	K1077		-0.225	_LLALCK(gl)K_
UXT	Ubiquitylation	K16	-1.728	-0.075	_AVEATGEK(gl)VLR_
UXT	Ubiquitylation	K41	0.218		_DK(gl)VYEQLAK_
VAPB	Ubiquitylation	K3	0.174		_(ac)AK(gl)VEQVLSLEPQHELK_
VAPB	Ubiquitylation	K118	-0.217		_EAKPEDLMDSK(gl)LR_
VAPB	Ubiquitylation	K147	0.150	0.167	_IISTTASK(gl)TETPIVSK_
VAPB	Phosphorylation	S158	2.164	2.536	_SLS(ph)SSLDDTEVKK_
VAPB	Phosphorylation	S160	0.543	0.936	_SLSSS(ph)LDDTEVKK_
VAPB	Ubiquitylation	K167		0.270	_SLSSSLDDTEVK(gl)K_
VAPB	Ubiquitylation	K168		0.270	_SLSSSLDDTEVK(gl)K_
VAPB	Ubiquitylation	K180		1.211	_LMEECK(gl)R_
VAPB	Ubiquitylation	K188	0.176	0.874	_LQGEMMK(gl)LSEENR_
VAPB	Phosphorylation	S214	0.747	1.178	_VAHSDKPGS(ph)TSTASFR_