RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
SPAG9	2	-0.110	0.210	1.305
SMARCD3	2	0.790	-0.310	0.206			1.501	1.642
HIRA	2	-1.620	2.740		0.660	0.537		0.081
MAPK14	2	-0.160	-0.350
CTNNA1	1	-0.520	1.660		-0.690	-1.164
CTNNA1	1	-0.520	1.660	0.139			0.436	0.323
C22orf39	1	0.860	-0.580		0.660	0.537		0.081
SEMA4C	1	-1.890	3.770
IFRD1	0	-1.200	1.320				-0.462	0.134
CTNNA2	0	0.660	-0.640	-1.825			0.254	0.247
CTNNA2	0	0.660	-0.640	0.139			0.436	0.323
MEF2A	0	0.820	-0.530
MEF2A	0	0.820	-0.530
CDC42	0	-0.170	0.490	-0.597			-1.527	-1.013
CDC42	0	1.240	-0.940	-0.597			-1.527	-1.013
TCF3	0	0.270	-0.020
MEF2C	0	-0.980	1.550
MEF2C	0	-0.980	1.550
ABL1	0	0.670	-0.070
MAP2K6	0	1.270	-0.780
SOX6	0	1.430	-0.800
MYF6	0				-0.145	-0.308
ASF1A	0	0.310	-0.850
QKI	0	1.130	-0.950				-2.091	-0.975
QKI	0	1.130	-0.950	-1.223
SYNE1	0	-0.990	2.410				0.468
BNIP2	0	-0.790	0.810
CTNNB1	0	0.490	-0.230
CTNNB1	0	0.490	-0.230	-0.415			0.628	0.215
CDH2	0	-0.110	-0.060				-1.092	-0.918
GLMN	0	1.160	-1.250	0.000

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ABL1	Phosphorylation	S1083	-1.131	-0.857	_GQGESDPLDHEPAVS(ph)PLLPR_
ABL1	Phosphorylation	S1134		0.293	_SSS(ph)FREMDGQPER_
ABL1	Phosphorylation	S1232	0.821	0.183	_SCS(ph)ASCVPHGAK_
ASF1A	Phosphorylation	S165	0.476	0.047	_LEDAES(ph)SNPNLQSLLSTDALPSASK_
ASF1A	Phosphorylation	S166		-0.537	_FHINWEDNTEKLEDAESS(ph)NPNLQSLLSTDALPSASK_
BNIP2	Phosphorylation	S114	1.031	0.808	_KGS(ph)ITEYTAAEEK_
C22orf39	Phosphorylation	T542		0.649	_DSM(ox)NAT(ph)STPAALSPSVLTTPSK_
C22orf39	Phosphorylation	S549	0.985	0.496	_DSM(ox)NATSTPAALS(ph)PSVLTTPSK_
C22orf39	Phosphorylation	S661	2.076	0.577	_LMPVSLSVQS(ph)PAALTAEK_
CDC42	Ubiquitylation	K173	-1.839		_DDPSTIEK(gl)LAK_
CDC42	Ubiquitylation	K178	-0.801	-0.716	_NK(gl)QKPITPETAEK_
CDC42	Ubiquitylation	K180	-1.806		_QK(gl)PITPETAEK(gl)LAR_
CDC42	Ubiquitylation	K189	-1.082		_QKPITPETAEK(gl)LAR_
CDC42	Ubiquitylation	K198	0.550	1.159	_AVK(gl)YVECSALTQK_
CDC42	Ubiquitylation	K208	-0.937	0.038	_YVECSALTQK(gl)GLK_
CDC42	Ubiquitylation	K228	-2.488		_NVFDEAILAALEPPEPK(gl)K_
CDC42	Ubiquitylation	K229	-1.254		_NVFDEAILAALEPPEPKK(gl)_
CTNNA1	Ubiquitylation	K16	-0.194	-0.141	_WDPK(gl)SLEIR_
CTNNA1	Ubiquitylation	K45	-1.131	-0.728	_LLEPLVTQVTTLVNTNSK(gl)GPSNK_
CTNNA1	Ubiquitylation	K120		-0.333	_AAAGEFADDPCSSVK(gl)R_
CTNNA1	Ubiquitylation	K414	0.977		_NGNEK(gl)EVKEYAQVFR_
CTNNA1	Ubiquitylation	K417	0.211		_NGNEK(gl)EVKEYAQVFR_
CTNNA1	Phosphorylation	S641	-0.056	0.089	_TPEELDDS(ph)DFETEDFDVR_
CTNNA1	Phosphorylation	T654	0.808	0.392	_SRT(ph)SVQTEDDQLIAGQSAR_
CTNNA1	Phosphorylation	S655	1.043	0.882	_SRTS(ph)VQTEDDQLIAGQSAR_
CTNNA1	Ubiquitylation	K683	3.760	-0.837	_AIMAQLPQEQKAK(gl)_
CTNNA1	Ubiquitylation	K747		-0.384	_NTSDVISAAK(gl)K_
CTNNA1	Ubiquitylation	K748	-0.083	-0.384	_NTSDVISAAKK(gl)_
CTNNB1	Ubiquitylation	K158		-1.265	_AIPELTK(gl)LLNDEDQVVVNK_
CTNNB1	Ubiquitylation	K180	-0.546	-0.636	_AAVM(ox)VHQLSK(gl)K_
CTNNB1	Ubiquitylation	K181	-0.717	-0.729	_AAVMVHQLSKK(gl)_
CTNNB1	Phosphorylation	S191	-0.024	0.129	_S(ph)PQMVSAIVR_
CTNNB1	Ubiquitylation	K435		-0.350	_NK(gl)MM(ox)VCQVGGIEALVR_
CTNNB1	Ubiquitylation	K496		-1.262	_LHYGLPVVVK(gl)_
CTNNB1	Phosphorylation	S552	1.233	1.224	_RTS(ph)MGGTQQQFVEGVR_
CTNNB1	Phosphorylation	T556	1.275	0.995	_RTSM(ox)GGT(ph)QQQFVEGVR_
CTNNB1	Ubiquitylation	K671	-0.941	-0.934	_MSEDKPQDYK(gl)K_
GLMN	Ubiquitylation	K11	0.194		_(ac)AVEELQSIIK(gl)R_
GLMN	Ubiquitylation	K214		0.595	_FCFK(gl)SLK_
GLMN	Ubiquitylation	K433		0.331	_NQIDMSLK(gl)R_
GLMN	Ubiquitylation	K525		-0.081	_AHYEAEIK(gl)NSQEAQK_
HIRA	Phosphorylation	T542		0.649	_DSM(ox)NAT(ph)STPAALSPSVLTTPSK_
HIRA	Phosphorylation	S549	0.985	0.496	_DSM(ox)NATSTPAALS(ph)PSVLTTPSK_
HIRA	Phosphorylation	S661	2.076	0.577	_LMPVSLSVQS(ph)PAALTAEK_
IFRD1	Ubiquitylation	K175		0.468	_TLGPILKK(gl)_
MAP2K6	Phosphorylation	T28	-1.813	-0.792	_EAFEQPQTSST(ph)PPRDLDSK_
MAP2K6	Ubiquitylation	K232		0.220	_INPELNQK(gl)GYSVK_
MAPK14	Phosphorylation	S2	3.221	3.623	_(ac)S(ph)QERPTFYR_
MAPK14	Phosphorylation	T180	0.958	1.087	_HTDDEM(ox)T(ph)GYVATR_
MAPK14	Phosphorylation	Y182	1.388	1.374	_HTDDEM(ox)TGY(ph)VATR_
MAPK14	Ubiquitylation	K249	0.073	-1.380	_LVGTPGAELLKK(gl)_
MEF2A	Ubiquitylation	K23		-0.140	_QVTFTK(gl)R_
MEF2A	Phosphorylation	S235	0.664	-0.092	_AS(ph)PNLIGATGANSLGK_
MEF2A	Phosphorylation	T253		-1.271	_VMPT(ph)KSPPPPGGGNLGMNSR_
MEF2A	Phosphorylation	S255		-1.235	_VMPTKS(ph)PPPPGGGNLGMNSR_
MEF2A	Phosphorylation	S408	-0.173	-0.049	_SEPIS(ph)PPRDR_
MEF2A	Phosphorylation	S494	-0.858	-1.232	_GDFHSPIVLGRPPNTEDRES(ph)PSVK_
MEF2C	Ubiquitylation	K23		-0.140	_QVTFTK(gl)R_
MEF2C	Phosphorylation	S240	0.008	0.302	_NS(ph)PGLLVSPGNLNK_
MEF2C	Phosphorylation	S406	0.272	0.338	_SEPVS(ph)PPRDR_
QKI	Ubiquitylation	K91	-0.019	-0.167	_LYVPVK(gl)EYPDFNFVGR_
QKI	Ubiquitylation	K111	0.236	0.638	_GLTAK(gl)QLEAETGCK_
QKI	Ubiquitylation	K190		-0.178	_LLVPAAEGEDSLK(gl)K_
QKI	Ubiquitylation	K191	0.259	-0.178	_LLVPAAEGEDSLKK(gl)_
SEMA4C	Ubiquitylation	K481		-1.114	_SLVLSQSK(gl)K_
SEMA4C	Ubiquitylation	K482		-1.114	_SLVLSQSK(gl)K_
SOX6	Phosphorylation	S98	-0.827	-0.182	_NTSTS(ph)PHKPDEGSR_
SPAG9	Ubiquitylation	K178	0.616		_TK(gl)LHQLSGSDQLESTAHSR_
SPAG9	Phosphorylation	S183	-0.041	0.617	_LHQLS(ph)GSDQLESTAHSR_
SPAG9	Phosphorylation	S185	-0.229	0.589	_LHQLSGS(ph)DQLESTAHSR_
SPAG9	Phosphorylation	S203	-0.173	0.319	_ERPIS(ph)LGIFPLPAGDGLLT(ph)PDAQK_
SPAG9	Phosphorylation	T217	1.022	0.515	_ERPIS(ph)LGIFPLPAGDGLLT(ph)PDAQK_
SPAG9	Phosphorylation	T226	2.211	2.141	_GGET(ph)PGSEQWK_
SPAG9	Phosphorylation	T275		2.752	_AT(ph)TPASTANSDVATIPTDTPLKEENEGFVK_
SPAG9	Phosphorylation	T276	2.516	2.823	_ATT(ph)PASTANSDVATIPTDTPLKEENEGFVK_
SPAG9	Phosphorylation	T292	2.076	1.667	_ATTPASTANSDVATIPTDT(ph)PLKEENEGFVK_
SPAG9	Phosphorylation	T330		0.261	_NVST(ph)GSAENEEKSEVQAIIESTPELDMDKDLSGYK_
SPAG9	Phosphorylation	S339	-0.150	0.210	_NVSTGSAENEEKS(ph)EVQAIIESTPELDMDKDLSGYK_
SPAG9	Phosphorylation	S593		0.642	_KRS(ph)STLSQLPGDK_
SPAG9	Phosphorylation	S594	0.719	0.528	_RSS(ph)TLSQLPGDK_
SPAG9	Phosphorylation	T595		0.585	_KRSST(ph)LSQLPGDK_
SPAG9	Ubiquitylation	K653	-0.358		_VQAFGWSLPQK(gl)YK_
SPAG9	Ubiquitylation	K699	-0.277		_LWCAVGVNLSGGK(gl)TR_
SPAG9	Phosphorylation	S728	0.903	-0.047	_S(ph)ASQSSLDKLDQELKEQQK_
SPAG9	Phosphorylation	S730	0.163	0.677	_SAS(ph)QSSLDKLDQELK_
SPAG9	Phosphorylation	S732	0.961	0.900	_SASQS(ph)SLDKLDQELKEQQK_
SPAG9	Phosphorylation	S733	0.740	0.712	_SASQSS(ph)LDKLDQELK_
SPAG9	Phosphorylation	S813		0.253	_ETDYPAGEDLS(ph)ESGQVDK_
SPAG9	Phosphorylation	S815		-0.037	_ETDYPAGEDLSES(ph)GQVDK_
SPAG9	Phosphorylation	T1264	-1.557	-1.235	_AGPSAQEPGSQT(ph)PLK_
SYNE1	Phosphorylation	S8305	0.804	0.456	_ALPS(ph)EDEEGQDDKDFYLR_
SYNE1	Phosphorylation	T8360	0.406	0.397	_SKT(ph)PTGPELDTSYK_
TCF3	Phosphorylation	S328	0.865	0.756	_AGAPGALS(ph)PSYDGGLHGLQSK_