RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
W

Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
KDM1A	1	-1.020	1.190				1.814	0.225
KDM1A	1	-1.020	1.190	0.355	0.031	0.593
PITX1	1	3.150	-0.920
ETS1	1	1.070	-0.650
CDH1	0	0.150	0.280	-0.623
SALL1	0			-0.080	0.063	0.213	0.247	0.009
BMPR1A	0	0.020	-0.130
HES1	0	-0.940	0.860
CREB1	0	1.080	-0.800			-1.027
ALDH1A2	0	-1.010	0.740
NKX2-1	0	-0.730	0.480		0.174	0.236
NKX2-1	0	-0.730	0.480				-0.123
TCF7L2	0	-0.550	0.790	-0.741
HMGA2	0	0.340	-0.490
MSX1	0	0.420	-0.450
RBPJ	0	1.900	-0.160	-0.367	0.284	0.723	-0.090	0.134
SOX2	0	-0.250	0.870

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ALDH1A2	Ubiquitylation	K365		-1.744	_VVGSPFDPTTEQGPQIDK(gl)K_
ALDH1A2	Ubiquitylation	K366		-1.744	_VVGSPFDPTTEQGPQIDK(gl)K_
ALDH1A2	Ubiquitylation	K507		0.123	_EYSEVK(gl)TVTVK_
BMPR1A	Ubiquitylation	K232	-0.391	0.172	_TIAK(gl)QIQMVR_
BMPR1A	Ubiquitylation	K477	0.265	-0.134	_EVVCVK(gl)R_
CREB1	Phosphorylation	S271	-0.979	-1.450	_TAPTSTIAPGVVM(ox)ASS(ph)PALPTQPAEEAAR_
CREB1	Ubiquitylation	K333	1.343		_ALK(gl)DLYCHK_
ETS1	Ubiquitylation	K416		7.479	_MNYEK(gl)LSR_
ETS1	Ubiquitylation	K427		-0.895	_YYYDK(gl)NIIHK_
HES1	Ubiquitylation	K66		0.212	_TLILDALK(gl)K_
HES1	Ubiquitylation	K67		0.212	_TLILDALK(gl)K_
HES1	Ubiquitylation	K109	-0.891		_AQMTAALSTDPSVLGK(gl)YR_
HMGA2	Phosphorylation	S44	-0.564	-0.762	_KQQQEPTGEPS(ph)PK_
HMGA2	Phosphorylation	S105	-0.055	-0.046	_KPAQEETEETSSQES(ph)AEED_
KDM1A	Phosphorylation	S69	-2.048	-2.645	_KEPPRAS(ph)PPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGR_
KDM1A	Phosphorylation	T88	-1.832		_KEPPRASPPGGLAEPPGSAGPQAGPT(ph)VVPGSATPM(ox)ETGIAETPEGR_
KDM1A	Phosphorylation	S126	0.780	0.501	_EMDES(ph)LANLSEDEYYS(ph)EEER_
KDM1A	Phosphorylation	S131	0.204	0.473	_EM(ox)DESLANLS(ph)EDEYYS(ph)EEER_
KDM1A	Phosphorylation	S137	0.122	0.511	_EM(ox)DESLANLS(ph)EDEYYS(ph)EEER_
KDM1A	Phosphorylation	S166	-2.328	-2.624	_KLPPPPPQAPPEEENES(ph)EPEEPSGVEGAAFQSR_
KDM1A	Ubiquitylation	K296	-0.820		_IKPLPTK(gl)K_
KDM1A	Ubiquitylation	K297	-0.820		_IKPLPTK(gl)K_
KDM1A	Ubiquitylation	K507	-1.073		_DITAEFLVKSK(gl)_
MSX1	Phosphorylation	S154		0.148	_RLS(ph)PPACTLR_
PITX1	Ubiquitylation	K5		1.200	_DAFK(gl)GGM(ox)SLER_
SALL1	Phosphorylation	S1119	-1.156	-1.235	_DTPTSHVPSGPLSSSATS(ph)PVLLPALPR_
SOX2	Phosphorylation	S251	0.157	-0.109	_SEASSS(ph)PPVVTSSSHSR_
TCF7L2	Ubiquitylation	K88	-0.867	-0.222	_ESLEEAAK(gl)R_