RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
W

Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
YBX2	2	0.320	-0.460		-0.197	-0.190	-1.344	-0.617
YBX3	2	-0.210	0.250		0.674	0.402	-1.244	-0.405
AFF4	2	0.330	0.020				-1.245	-0.478
TRIP13	1	-0.240	0.310	0.317				1.501
FNDC3A	1	0.480	-0.460				-0.044	0.161
GAPDHS	0	0.660	-0.870	0.283	0.870	0.760	-0.040	-0.473
RNF8	0	1.030	-0.670
QKI	0	1.130	-0.950				-2.091	-0.975
QKI	0	1.130	-0.950	-1.223
STK11	0
PANK2	0	-0.870	1.750
PANK2	0	-0.870	1.750
HSPA2	0	-0.890	1.860	0.109
PVRL2	0	-0.940	1.620				0.748	-0.029
RNF17	0	-1.150	2.390
RNF17	0	0.380	-0.390
HOOK1	0	1.180	-1.060
ODF2	0	-0.890	1.110
BBS4	0	0.310	0.160
TMF1	0	1.240	-1.110				0.028	0.252
CELF2	0	-0.750	0.440			-1.052	-0.790	0.146
STRBP	0	-0.280	0.250	-0.384	-0.670	-0.220	-0.790	0.112
JAM3	0	0.860	-0.200				0.644	0.464
SIX5	0	1.550	-0.970	-0.213
ZFP42	0	-0.080	-0.300					-2.163
FANCG	0	0.390	-0.740		0.107	0.986

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
AFF4	Phosphorylation	S180	0.226	-0.021	_SSS(ph)PGKPQAVSSLNSSHSR_
AFF4	Phosphorylation	S212		2.114	_SKS(ph)PRDPDANWDSPSR_
AFF4	Ubiquitylation	K297	-0.843		_AHLTK(gl)LK_
AFF4	Ubiquitylation	K299		-6.625	_AHLTKLK(gl)_
AFF4	Ubiquitylation	K363	-0.311	-4.640	_ESQQSNFGTGEQK(gl)R_
AFF4	Phosphorylation	S487	-0.510	-0.525	_VS(ph)PASSVDSNIPSSQGYK_
AFF4	Phosphorylation	Y668	1.090		_Y(ph)PESNRTPVKPSSVEEEDSFFR_
AFF4	Phosphorylation	S671		-0.112	_YPES(ph)NRTPVKPSSVEEEDSFFR_
AFF4	Phosphorylation	S679	1.473		_YPESNRTPVKPS(ph)SVEEEDSFFR_
AFF4	Phosphorylation	S694		0.693	_MFS(ph)PMEEK_
AFF4	Phosphorylation	S703		-1.838	_ELLS(ph)PLSEPDDRYPLIVK_
AFF4	Phosphorylation	S706		-1.560	_ELLSPLS(ph)EPDDRYPLIVK_
AFF4	Phosphorylation	S814	-0.345	-0.588	_EKDLLPS(ph)PAGPVPSKDPK_
AFF4	Phosphorylation	S836	1.948	2.016	_RTIS(ph)QSSSLK_
AFF4	Phosphorylation	S1043	0.500	0.232	_NSYNNSQAPS(ph)PGLGSK_
AFF4	Phosphorylation	S1055		-1.035	_AVGMPS(ph)PVSPK_
AFF4	Phosphorylation	S1058	-0.975	-1.108	_AVGMPSPVS(ph)PK_
BBS4	Ubiquitylation	K28		-0.615	_TQFPVSTESQK(gl)PR_
BBS4	Ubiquitylation	K302		-2.331	_YVAAISCLK(gl)R_
BBS4	Ubiquitylation	K408		-2.242	_NALAQYQEMEK(gl)K_
BBS4	Ubiquitylation	K409		-2.242	_NALAQYQEMEK(gl)K_
CELF2	Phosphorylation	S21		-0.613	_LDFLPEMMVDHCSLNS(ph)SPVSK_
CELF2	Phosphorylation	S22	-0.868	-0.442	_LDFLPEMMVDHCSLNSS(ph)PVSK_
CELF2	Ubiquitylation	K86	-0.119	0.870	_SQNPPQSK(gl)GCCFVTFYTR_
CELF2	Ubiquitylation	K97	0.573		_K(gl)AALEAQNALHNMK_
CELF2	Ubiquitylation	K464	0.890	0.625	_VFIDK(gl)QTNLSK_
FANCG	Ubiquitylation	K28		-0.599	_QAK(gl)VAQNSGLTLR_
FANCG	Ubiquitylation	K504		-1.806	_ATPEEKEQGAAFNCEQGCK(gl)SDAALQQLR_
FNDC3A	Phosphorylation	S203	1.581	-0.157	_MSS(ph)PPSSPQK_
GAPDHS	Ubiquitylation	K61	0.521	0.820	_FHGTVK(gl)AENGK_
GAPDHS	Ubiquitylation	K66	-0.023		_FHGTVKAENGK(gl)_
GAPDHS	Ubiquitylation	K86	0.473		_IK(gl)WGDAGAEYVVESTGVFTTMEK_
GAPDHS	Ubiquitylation	K117	1.371		_AGAHLQGGAK(gl)R_
GAPDHS	Ubiquitylation	K145	0.536	0.707	_YDNSLK(gl)IISNASCTTNCLAPLAK_
GAPDHS	Ubiquitylation	K194	0.139	0.426	_TVDGPSGK(gl)LWR_
GAPDHS	Ubiquitylation	K215	0.068	0.425	_GALQNIIPASTGAAK(gl)AVGK_
GAPDHS	Ubiquitylation	K219		0.588	_GALQNIIPASTGAAKAVGK(gl)_
GAPDHS	Ubiquitylation	K254	-0.005		_LEKPAK(gl)YDDIKK_
GAPDHS	Ubiquitylation	K259	-0.052	0.054	_LEKPAKYDDIK(gl)K_
GAPDHS	Ubiquitylation	K260	0.061	-0.269	_LEKPAKYDDIKK(gl)_
GAPDHS	Ubiquitylation	K263	-0.140	0.790	_VVK(gl)QASEGPLK_
HOOK1	Ubiquitylation	K424	-0.352		_DTLK(gl)ETNEELR_
HOOK1	Ubiquitylation	K612		-0.788	_MYLEK(gl)AR_
HOOK1	Ubiquitylation	K678		0.231	_SLAFQK(gl)LGMESR_
HOOK1	Phosphorylation	S719	-0.815	-0.265	_NLS(ph)VKVPATTSD_
ODF2	Ubiquitylation	K295	-1.045		_LMEQQGALLK(gl)R_
PANK2	Ubiquitylation	K50	-0.499		_K(gl)YLTSNVAYGSTGIR_
PANK2	Phosphorylation	S168	0.380	0.712	_RAS(ph)SASVPAVGASAEGTR_
PANK2	Phosphorylation	S169	0.345	0.567	_ASS(ph)ASVPAVGASAEGTR_
PANK2	Phosphorylation	S189	0.639	0.760	_LGS(ph)YSGPTSVSR_
PANK2	Ubiquitylation	K486		-0.572	_EAVSK(gl)EDLAR_
PVRL2	Phosphorylation	T410		-1.005	_EQTLQGAEEDEDLEGPPSYKPPT(ph)PK_
PVRL2	Phosphorylation	S430		0.026	_LEAQEMPSQLFTLGAS(ph)EHSPLK_
PVRL2	Phosphorylation	S433		-0.325	_LEAQEMPSQLFTLGASEHS(ph)PLK_
QKI	Ubiquitylation	K91	-0.019	-0.167	_LYVPVK(gl)EYPDFNFVGR_
QKI	Ubiquitylation	K111	0.236	0.638	_GLTAK(gl)QLEAETGCK_
QKI	Ubiquitylation	K190		-0.178	_LLVPAAEGEDSLK(gl)K_
QKI	Ubiquitylation	K191	0.259	-0.178	_LLVPAAEGEDSLKK(gl)_
RNF17	Ubiquitylation	K772	0.656	0.890	_ITIK(gl)DVR_
RNF8	Phosphorylation	S157	-0.377	-0.438	_KFS(ph)LDELAGPGAEGPSNLK_
STK11	Phosphorylation	S31	0.437	0.073	_IDS(ph)TEVIYQPR_
STK11	Phosphorylation	T32	1.256	0.248	_IDS(ph)TEVIYQPR_
TMF1	Phosphorylation	S160		-1.216	_DSSLCVS(ph)GETLAAGTSSPK_
TMF1	Phosphorylation	S344	0.779	-0.050	_SVSEINS(ph)DDELSGK_
TMF1	Phosphorylation	S399	-0.276	-0.307	_S(ph)ATPVNCEQPDILVSSTPINEGQTVLDK_
TMF1	Phosphorylation	T401	-0.276	-0.307	_S(ph)ATPVNCEQPDILVSSTPINEGQTVLDK_
TRIP13	Ubiquitylation	K34	-0.989	-0.620	_GSSTAK(gl)KEDINLSVR_
TRIP13	Ubiquitylation	K195		-0.753	_ALAQK(gl)LTIR_
YBX2	Ubiquitylation	K64	5.830	4.056	_VLGTVK(gl)WFNVR_
YBX2	Ubiquitylation	K137	-0.751	0.084	_GAEAANVTGPGGVPVQGSK(gl)YAADR_
YBX2	Phosphorylation	Y162		-0.210	_NYQQNY(ph)QNSESGEKNEGSESAPEGQAQQR_
YBX2	Phosphorylation	S165	0.119	0.151	_NYQQNYQNS(ph)ESGEK_
YBX2	Ubiquitylation	K170	-0.297	0.298	_NYQQNYQNSESGEK(gl)NEGSESAPEGQAQQR_
YBX2	Phosphorylation	S174	0.041	0.228	_NEGS(ph)ESAPEGQAQQR_
YBX2	Phosphorylation	S176	0.061	0.075	_NEGSES(ph)APEGQAQQR_
YBX2	Phosphorylation	S209	0.658	-0.148	_RPQYS(ph)NPPVQGEVM(ox)EGADNQGAGEQGRPVR_
YBX3	Phosphorylation	S34	-1.234	-1.488	_S(ph)PVGSGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLATAAGSEDAEK_
YBX3	Phosphorylation	S79		-2.262	_SPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLATAAGS(ph)EDAEKK_
YBX3	Ubiquitylation	K90	3.724	2.851	_VLATK(gl)VLGTVK_
YBX3	Ubiquitylation	K96	5.830	4.056	_VLGTVK(gl)WFNVR_
YBX3	Ubiquitylation	K113	1.472	1.136	_NDTK(gl)EDVFVHQTAIK_
YBX3	Ubiquitylation	K124	-0.184	0.337	_NDTKEDVFVHQTAIK(gl)K(gl)NNPR_
YBX3	Ubiquitylation	K125	-0.123	0.220	_NDTKEDVFVHQTAIK(gl)K(gl)NNPR_
YBX3	Phosphorylation	S203	-0.609	-0.604	_NYAGEEEEEGSGS(ph)SEGFDPPATDR_
YBX3	Ubiquitylation	K268	-0.103	-0.702	_IQAGEIGEMK(gl)DGVPEGAQLQGPVHR_
YBX3	Phosphorylation	S324	-1.327	-0.720	_PAPAVGEAEDKENQQATSGPNQPS(ph)VR_