RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
RAD50	3	0.350	-0.420	0.165	0.571	0.509	0.691	0.587
MSH6	2	-0.410	0.140	-0.115	0.232	0.645	0.407	0.101
RAD21	2	-1.050	0.820	2.113	0.118	0.244	0.668	0.414
LIG3	1	-0.380	2.090		-0.284	0.336	0.549	0.370
TRIP13	1	-0.240	0.310	0.317				1.501
SYCP1	1	-1.970	2.940		-0.881
MRE11A	0	1.600	-0.730		0.145	0.420
MRE11A	0	1.600	-0.730	0.023			0.453	0.150
RAD51	0	-1.260	1.920
MLH1	0	-0.460	0.110	-0.360	1.227	1.219
RAD51C	0	0.400	0.260
MSH3	0	0.890	-0.360	-0.771	0.719	0.629	0.421	0.240
PMS2	0	0.410	-0.450
ATM	0						0.398	0.474
RAD51B	0	-1.570	1.980
RAD54B	0	1.010	-0.510

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ATM	Ubiquitylation	K307		-0.196	_GAYESTK(gl)WR_
ATM	Ubiquitylation	K331		-0.126	_GK(gl)YSSGFR_
ATM	Ubiquitylation	K385		-0.669	_ESSDYSVPCK(gl)R_
ATM	Ubiquitylation	K1101		-0.548	_LFQDTK(gl)GDSSR_
ATM	Ubiquitylation	K1109		-1.666	_LLK(gl)ALPLK_
ATM	Ubiquitylation	K1698		-1.026	_DASYTK(gl)ALK_
ATM	Ubiquitylation	K1738		-0.137	_SAAVTCLK(gl)NILATK_
ATM	Ubiquitylation	K2025		-1.497	_SIGEPDSLYGCGGGK(gl)MLQPITR_
LIG3	Phosphorylation	T209	-0.306	-0.552	_LTTTGQVT(ph)SPVK_
LIG3	Phosphorylation	S210	-0.163	0.011	_LTTTGQVTS(ph)PVK_
LIG3	Phosphorylation	S241	-0.868	-0.902	_PNNSGEAPS(ph)SPTPK_
LIG3	Phosphorylation	S242	-0.782	-0.612	_FSGFSAKPNNSGEAPSS(ph)PTPK_
LIG3	Ubiquitylation	K728	0.493	0.853	_WCTVTK(gl)CAGGHDDATLAR_
LIG3	Ubiquitylation	K833	1.857	0.467	_ELYQLSK(gl)EK_
MRE11A	Ubiquitylation	K387	0.442		_FSQK(gl)FVDR_
MSH6	Phosphorylation	S41	-0.708	-0.948	_AAAAPGAS(ph)PSPGGDAAWSEAGPGPRPLAR_
MSH6	Phosphorylation	S43	0.319	-0.234	_AAAAPGASPS(ph)PGGDAAWSEAGPGPR_
MSH6	Phosphorylation	S137	0.203	0.359	_VHVQFFDDS(ph)PTR_
MSH6	Phosphorylation	T139	0.209		_VHVQFFDDSPT(ph)R_
MSH6	Phosphorylation	S227	-0.199	-0.192	_SEEDNEIES(ph)EEEVQPK_
MSH6	Ubiquitylation	K334		0.193	_QATSISSETK(gl)NTLR_
MSH6	Ubiquitylation	K476	1.536	0.184	_YSDSLVQK(gl)GYK_
MSH6	Ubiquitylation	K519	2.264	0.186	_IITK(gl)GTQTYSVLEGDPSENYSK_
MSH6	Ubiquitylation	K728	0.082	-0.280	_SGAIFTK(gl)AYQR_
MSH6	Ubiquitylation	K771	-0.582	-1.069	_VDTCHTPFGK(gl)R_
MSH6	Phosphorylation	S830	0.130	1.666	_IHNVGS(ph)PLK_
MSH6	Ubiquitylation	K852		-0.044	_AIMYEETTYSK(gl)K_
MSH6	Ubiquitylation	K853		-0.044	_AIMYEETTYSK(gl)K_
MSH6	Ubiquitylation	K896		-0.342	_QVISLQTK(gl)NPEGR_
MSH6	Ubiquitylation	K997		-0.863	_NLPEEYELK(gl)STK_
MSH6	Ubiquitylation	K1009		-0.817	_YWTK(gl)TIEK_
MSH6	Ubiquitylation	K1030	0.394	-0.156	_DVSLK(gl)DCMR_
MSH6	Ubiquitylation	K1240		-0.672	_ELAETIK(gl)CR_
MSH6	Ubiquitylation	K1291		0.633	_FIK(gl)GACPK_
MSH6	Ubiquitylation	K1296		-1.142	_GACPK(gl)SYGFNAAR_
MSH6	Ubiquitylation	K1315		-1.738	_LANLPEEVIQK(gl)GHR_
MSH6	Ubiquitylation	K1325		-0.190	_EFEK(gl)MNQSLR_
PMS2	Ubiquitylation	K146	-0.403		_IIQK(gl)TPYPRPR_
RAD21	Ubiquitylation	K72		0.517	_AK(gl)YLLADCNEAFIK_
RAD21	Ubiquitylation	K335	-0.110	-0.497	_ELDSK(gl)TIR_
RAD21	Ubiquitylation	K364	0.738	0.610	_LMMWK(gl)ETGGVEK_
RAD21	Ubiquitylation	K387	-0.350		_LLK(gl)LFTR_
RAD21	Ubiquitylation	K573	1.907		_ALAK(gl)TGAESISLLELCR_
RAD50	Ubiquitylation	K62	-1.069		_YICTGDFPPGTK(gl)GNTFVHDPK_
RAD50	Phosphorylation	S635	2.474	3.050	_LFDVCGS(ph)QDFESDLDR_
RAD50	Ubiquitylation	K753	0.394	0.397	_NK(gl)LQNVNR_
RAD50	Ubiquitylation	K933	0.397		_FQQEKEELINKK(gl)_
RAD50	Ubiquitylation	K1068	0.098		_LEENIDNIK(gl)R_
RAD50	Ubiquitylation	K1178	-0.548		_SDADENVSASDK(gl)RR_
RAD50	Ubiquitylation	K1285	2.195		_SEYVEK(gl)FYR_
RAD51	Ubiquitylation	K64	-1.228		_KELINIK(gl)GISEAK_
RAD51B	Ubiquitylation	K71		-0.262	_MQTAYGIK(gl)AQR_
RAD51C	Phosphorylation	S20	-0.880	-0.922	_DLVSFPLS(ph)PAVR_
RAD51C	Ubiquitylation	K72	-1.746	-0.333	_ECLTNK(gl)PR_
RAD51C	Ubiquitylation	K328		-0.364	_LATLYK(gl)SPSQK_
RAD54B	Phosphorylation	S14		-0.406	_SAAPSQLQGNS(ph)FK_
TRIP13	Ubiquitylation	K34	-0.989	-0.620	_GSSTAK(gl)KEDINLSVR_
TRIP13	Ubiquitylation	K195		-0.753	_ALAQK(gl)LTIR_