RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
ATP6V1H	2	-1.810	2.860				0.325
ATP6V1H	2	-1.810	2.860	-0.409
ACO1	1	-2.080	4.040
NDFIP1	1	2.140	-1.140
ATP6V1B2	1	-1.700	3.610				-0.526	0.143
ATP6V0D1	1	-0.960	0.640
ATP6V0D1	1	-0.960	0.640	-0.252			-0.493	2.836
FTH1	1	-0.230	0.610	2.863			0.755	1.309
FTH1	1	0.280	-0.310	2.863			0.755	1.309
ATP6V0A1	0	-0.580	0.460				-0.439	0.009
TTC7A	0	0.820	-0.780
TFRC	0	-0.840	0.870				-1.270	-0.277
TFRC	0	-0.840	0.870	0.348			-1.075	-0.602
FTL	0	1.010	-0.640				0.877	0.424
FTL	0	1.010	-0.640
HMOX1	0	0.330	0.220				-1.817	-1.289
ATP6V1D	0	1.770	-0.910				0.833	0.523
HIF1A	0	-0.480	0.400
HMOX2	0	0.000	1.100				0.674	0.175
ATP6V1A	0	-0.790	0.280	0.981			0.151	0.014
STEAP3	0	1.380	-1.140	-0.558				-0.578
ABCB6	0	0.580	-0.070
ATP6V1B1	0	1.440	-1.080				-0.526	0.143
ATP6V1E1	0	-0.180	0.310				-0.346	-2.246
ABCB7	0	-1.290	2.020				0.257	0.214
IREB2	0	-0.280	-0.190
ATP6V1G1	0	0.090	-0.400
ATP6V1G1	0	0.090	-0.400
ATP6V1G2	0	-0.040	0.160
ATP6V1G2	0	-0.040	0.160
ATP6V1G2-D	0
ATP6V1G2-D	0
MYC	0	0.170	0.550	-2.443	-0.949	-0.454		-1.290
SOD1	0	1.450	-1.250
ATP6V1C1	0
FLVCR1	0	1.260	-0.470
FLVCR1	0	1.260	-0.470
MON1A	0	-1.290	1.600
ATP6V0A2	0	1.190	-0.740				0.137	-0.457
ATP6V1E2	0	-0.020	-0.010

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ABCB6	Ubiquitylation	K771	-0.119	0.083	_AIQASLAK(gl)VCANR_
ABCB7	Ubiquitylation	K608	0.115	0.132	_GLK(gl)LSGGEK_
ACO1	Ubiquitylation	K79		-0.349	_NIEVPFK(gl)PAR_
ACO1	Ubiquitylation	K396		-0.346	_DFESCLGAK(gl)QGFK_
ATP6V0A1	Ubiquitylation	K119		0.578	_EINTNQEALK(gl)R_
ATP6V0A1	Ubiquitylation	K235		0.326	_K(gl)ICEGFR_
ATP6V0A1	Ubiquitylation	K255	0.143		_K(gl)EMASGVNTR_
ATP6V0A1	Ubiquitylation	K366		-0.441	_MQTNQTPPTYNK(gl)TNK_
ATP6V0A1	Ubiquitylation	K369	-1.113	-0.322	_MQTNQTPPTYNKTNK(gl)_
ATP6V0A2	Ubiquitylation	K136	0.287		_VTK(gl)TFVKR_
ATP6V0A2	Ubiquitylation	K290	0.039	-0.079	_QVLCK(gl)AAESVYSR_
ATP6V0A2	Phosphorylation	S695	0.705	0.859	_KDS(ph)EEEVSLLGSQDIEEGNHQVEDGCR_
ATP6V0D1	Ubiquitylation	K384	0.065	-0.172	_AK(gl)IDNYIPIF_
ATP6V1A	Ubiquitylation	K5	-0.075	-0.921	_(ac)MDFSK(gl)LPK_
ATP6V1A	Ubiquitylation	K132		0.567	_DIK(gl)WDFTPCK_
ATP6V1A	Ubiquitylation	K139	-1.426	-0.412	_WDFTPCK(gl)NLR_
ATP6V1A	Ubiquitylation	K393		-0.894	_VK(gl)CLGNPER_
ATP6V1A	Ubiquitylation	K516		-0.571	_LIK(gl)DDFLQQNGYTPYDR_
ATP6V1C1	Ubiquitylation	K28	-0.393		_LHAATSK(gl)NNNLAVTSK_
ATP6V1E1	Ubiquitylation	K10	0.069	-0.101	_(ac)ALSDADVQK(gl)QIK_
ATP6V1E1	Ubiquitylation	K145	-2.187	-0.725	_KQDFPLVK(gl)AAVQK_
ATP6V1E1	Ubiquitylation	K150		-0.749	_AAVQK(gl)AIPMYK_
ATP6V1E1	Ubiquitylation	K156		-1.382	_AIPMYK(gl)IATK_
ATP6V1E2	Ubiquitylation	K10	0.468		_ALSDVDVKK(gl)_
ATP6V1G1	Phosphorylation	S3		1.440	_(ac)AS(ph)QSQGIQQLLQAEK_
ATP6V1G1	Ubiquitylation	K16	0.071		_(ac)ASQSQGIQQLLQAEK(gl)R_
ATP6V1G2	Phosphorylation	S3		1.440	_(ac)AS(ph)QSQGIQQLLQAEK_
ATP6V1G2	Ubiquitylation	K16	0.071		_(ac)ASQSQGIQQLLQAEK(gl)R_
ATP6V1G2-DDX39B	Phosphorylation	S3		1.440	_(ac)AS(ph)QSQGIQQLLQAEK_
ATP6V1G2-DDX39B	Ubiquitylation	K16	0.071		_(ac)ASQSQGIQQLLQAEK(gl)R_
ATP6V1H	Ubiquitylation	K176	1.541	0.958	_TQLSSQK(gl)LR_
FLVCR1	Ubiquitylation	K33	-0.251	-1.311	_GAPVGK(gl)ESVELQNGPK_
FLVCR1	Phosphorylation	S536	1.258	0.701	_AIPADS(ph)PTDQEPK_
FLVCR1	Ubiquitylation	K543	-0.643		_AIPADSPTDQEPK(gl)TVMLSK_
FLVCR1	Ubiquitylation	K549	0.772	0.078	_TVMLSK(gl)QSESAI_
FTH1	Phosphorylation	S228		0.272	_MGAPESGLAEYLFDKHTLGDS(ph)DNES_
FTL	Ubiquitylation	K68		0.527	_LLK(gl)MQNQR_
HIF1A	Ubiquitylation	K10		-1.686	_(ac)MEGAGGANDK(gl)K_
HIF1A	Ubiquitylation	K11		-1.686	_(ac)MEGAGGANDK(gl)K_
HIF1A	Ubiquitylation	K173		-0.662	_MK(gl)CTLTSR_
HIF1A	Ubiquitylation	K186		-0.590	_TMNIK(gl)SATWK_
HIF1A	Ubiquitylation	K252		-0.784	_HSLDM(ox)K(gl)FSYCDER_
HIF1A	Ubiquitylation	K371		-0.508	_PVESSDMK(gl)MTQLFTK_
HIF1A	Ubiquitylation	K378		-0.077	_MTQLFTK(gl)VESEDTSSLFDK_
HIF1A	Ubiquitylation	K390		-0.348	_VESEDTSSLFDK(gl)LKK_
HIF1A	Ubiquitylation	K392		-0.546	_VESEDTSSLFDKLK(gl)_
HIF1A	Ubiquitylation	K393		-0.451	_VESEDTSSLFDKLKK(gl)_
HIF1A	Ubiquitylation	K710		-1.696	_TTVPEEELNPK(gl)ILALQNAQR_
HMOX1	Ubiquitylation	K243		-0.972	_ASNK(gl)VQDSAPVETPR_
HMOX1	Ubiquitylation	K256		-1.769	_GK(gl)PPLNTR_
HMOX2	Ubiquitylation	K24	-1.148		_NSGALEK(gl)ENQMR_
HMOX2	Ubiquitylation	K38	-0.296		_MADLSELLK(gl)EGTK_
HMOX2	Ubiquitylation	K214	-0.356	0.716	_MNALDLNMK(gl)TK_
HMOX2	Ubiquitylation	K216	-0.556		_MNALDLNMKTK(gl)_
HMOX2	Ubiquitylation	K259	-0.832	0.394	_ETLEDGFPVHDGK(gl)GDMR_
IREB2	Ubiquitylation	K34		-0.190	_LGTK(gl)YDVLPYSIR_
IREB2	Ubiquitylation	K72		-0.991	_TK(gl)QSNVEVPFFPAR_
IREB2	Ubiquitylation	K107		-0.118	_EAVK(gl)TLGGDPEK_
IREB2	Ubiquitylation	K404		0.190	_AK(gl)LESMETYLK_
IREB2	Ubiquitylation	K413		-0.308	_AKLESM(ox)ETYLK(gl)AVK_
IREB2	Ubiquitylation	K461		0.236	_VAVTDMK(gl)SDFQACLNEK_
IREB2	Ubiquitylation	K475		-0.206	_VGFK(gl)GFQIAAEK_
IREB2	Ubiquitylation	K611		0.037	_QGDLVTCGILSGNK(gl)NFEGR_
IREB2	Ubiquitylation	K696	-1.215	-0.023	_IEMGNK(gl)R_
IREB2	Ubiquitylation	K769	-1.464	-0.009	_NSAAAK(gl)YLTNR_
IREB2	Ubiquitylation	K803		0.505	_GTFANIK(gl)LFNK_
IREB2	Ubiquitylation	K847		-0.038	_EGIPLIILAGK(gl)K_
IREB2	Ubiquitylation	K848		-0.038	_EGIPLIILAGK(gl)K_
IREB2	Ubiquitylation	K860		0.906	_DWAAK(gl)GPYLLGVK_
MON1A	Phosphorylation	S31		-0.402	_AES(ph)PTPGMAQGMEPGAGQEGAMFVHAR_
MON1A	Phosphorylation	S56	0.647	0.773	_S(ph)YEDLTESEDGAASGDSHK_
MYC	Phosphorylation	S20	-1.444	-1.145	_PLNVS(ph)FTNR_
MYC	Phosphorylation	T72	-1.699	-1.813	_FELLPT(ph)PPLS(ph)PSRR_
MYC	Phosphorylation	S76	-1.777	-1.435	_FELLPTPPLS(ph)PSR_
MYC	Phosphorylation	S81		0.459	_S(ph)GLCSPSYVAVTPFSLR_
MYC	Phosphorylation	S85	0.199	0.073	_SGLCS(ph)PSYVAVTPFSLR_
MYC	Ubiquitylation	K162	-2.475	-1.259	_LVSEK(gl)LASYQAAR_
MYC	Phosphorylation	S295		-0.903	_SESGS(ph)PSAGGHSKPPHSPLVLK_
MYC	Phosphorylation	S307		-1.486	_SES(ph)GSPSAGGHSKPPHS(ph)PLVLK_
MYC	Ubiquitylation	K340		-2.449	_VK(gl)LDSVR_
MYC	Ubiquitylation	K403		-3.432	_DQIPELENNEK(gl)APK_
NDFIP1	Ubiquitylation	K83	-1.563	-0.959	_TK(gl)AEATIPLVPGRDEDFVGR_
NDFIP1	Ubiquitylation	K204		-0.511	_K(gl)MPETFSNLPR_
SOD1	Ubiquitylation	K4	-0.329		_(ac)ATK(gl)AVCVLK_
SOD1	Ubiquitylation	K10	0.211	0.582	_AVCVLK(gl)GDGPVQGIINFEQK_
SOD1	Ubiquitylation	K24	-0.435	-0.086	_GDGPVQGIINFEQK(gl)ESNGPVK_
SOD1	Ubiquitylation	K31	-0.109	0.332	_ESNGPVK(gl)VWGSIK_
SOD1	Phosphorylation	S99		0.405	_HVGDLGNVTADKDGVADVS(ph)IEDSVISLSGDHCIIGR_
SOD1	Ubiquitylation	K123	0.352	0.004	_TLVVHEK(gl)ADDLGK_
SOD1	Ubiquitylation	K129	0.143		_ADDLGK(gl)GGNEESTK_
SOD1	Ubiquitylation	K137	0.464	0.934	_ADDLGKGGNEESTK(gl)TGNAGSR_
STEAP3	Phosphorylation	S17		1.039	_PEEMDKPLISLHLVDS(ph)DSSLAK_
STEAP3	Ubiquitylation	K175	-0.783	-0.882	_QVPICGDQPEAK(gl)R_
STEAP3	Ubiquitylation	K472	-0.323		_ESTIK(gl)FTLPTDHALAEK_
STEAP3	Ubiquitylation	K484	-0.079	0.275	_FTLPTDHALAEK(gl)TSHV_
TFRC	Ubiquitylation	K53	-1.280	0.042	_LAVDEEENADNNTK(gl)ANVTKPK_
TFRC	Ubiquitylation	K371		1.291	_MVTSESK(gl)NVK_
TFRC	Ubiquitylation	K374		1.291	_MVTSESK(gl)NVK_
TTC7A	Ubiquitylation	K824		-1.775	_SLAQK(gl)VLR_