RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
W

Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
VCP	2	1.650	-0.640	-0.182	0.578	-0.596	0.007	-0.036
ATG2B	1	-0.250	-0.100
FAF2	1	3.150	-1.400	-0.085			0.257	0.187
SIGMAR1	1				4.327
PNPLA2	1	0.550	-0.450
PNPLA2	1	0.550	-0.450
KATNA1	1	-1.910	4.710
AIFM2	0	-1.340	1.620
ACSL4	0	1.120	-0.740	-0.154		-1.054	0.236	0.117
LIPE	0	0.910	-0.460	-0.066
LPCAT2	0	0.380	-0.210
CYB5R3	0	0.070	-0.120	0.487			0.294	0.404
CAV1	0	1.150	-0.150
CAV1	0	1.150	-0.150
CAV1	0	1.150	-0.150
ATG2A	0	-0.120	-0.210	-0.082
EHD1	0	-0.060	0.300
PRPF19	0	-0.460	0.190	-0.179	-0.151	-0.246
GAPDH	0	0.130	0.380	0.283	0.870	0.760	-0.040	-0.473
ACSL3	0	-1.350	2.060	0.010	0.425	-0.116	0.343	0.188
RAP1B	0	-0.520	0.540	-0.200			0.374	0.556
SPG20	0	0.600	-0.270
SPG20	0	0.600	-0.270
CKAP4	0	0.020	-0.240				0.850	0.673
SCCPDH	0	-0.680	0.570				-0.346	-1.136
LPCAT1	0	0.790	-0.740	0.844			0.107	0.289
LSS	0	1.920	-0.820	0.063
LSS	0	1.920	-0.820				0.985	0.835
ANXA2	0	-1.230	1.610
ANXA2	0	-0.830	1.020
ANXA2	0	-0.740	0.850
ANXA2	0	-1.230	1.610	-0.075	0.002	-0.652	0.608	0.330
ANXA2	0	-0.830	1.020	-0.075	0.002	-0.652	0.608	0.330
ANXA2	0	-0.740	0.850	-0.075	0.002	-0.652	0.608	0.330
METTL7A	0	-1.380	2.080				1.352	1.038
HSD17B11	0	0.030	-0.710					-0.068

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ACSL3	Ubiquitylation	K8		0.466	_(ac)MNNHVSSK(gl)PSTMK_
ACSL3	Ubiquitylation	K63	-0.973	-1.522	_AKPVNSK(gl)PDSAYR_
ACSL4	Ubiquitylation	K49	-1.745		_AK(gl)PTSDKPGSPYR_
ACSL4	Ubiquitylation	K54	-1.457		_AKPTSDK(gl)PGSPYR_
ACSL4	Ubiquitylation	K354	0.109	0.988	_IGYSSPLTLSDQSSK(gl)IK_
ACSL4	Ubiquitylation	K356	0.153	0.800	_IGYSSPLTLSDQSSKIK(gl)_
ACSL4	Ubiquitylation	K500	-1.017	-0.639	_LK(gl)DWQEGGYTINDKPNPR_
ACSL4	Ubiquitylation	K621	0.455	0.184	_SDQSYVISFVVPNQK(gl)R_
ACSL4	Ubiquitylation	K661	0.291	0.519	_EAANAM(ox)K(gl)LER_
ACSL4	Ubiquitylation	K670	-0.058	-0.343	_FEIPIK(gl)VR_
ACSL4	Ubiquitylation	K702	0.575		_NHYLK(gl)DIER_
AIFM2	Ubiquitylation	K193	0.976	0.037	_QEVK(gl)EILLR_
ANXA2	Phosphorylation	S12		0.179	_(ac)STVHEILCKLS(ph)LEGDHSTPPSAYGSVK_
ANXA2	Phosphorylation	T19	0.015	-0.422	_LSLEGDHST(ph)PPSAYGSVK_
ANXA2	Phosphorylation	S22	-0.273	-1.050	_LSLEGDHSTPPS(ph)AYGSVK_
ANXA2	Phosphorylation	Y24		-1.100	_LSLEGDHSTPPSAY(ph)GSVK_
ANXA2	Phosphorylation	S26	-0.518	-0.691	_LSLEGDHSTPPSAYGS(ph)VK_
ANXA2	Ubiquitylation	K49	0.729		_TK(gl)GVDEVTIVNILTNR_
ANXA2	Ubiquitylation	K148	0.314	1.024	_VYK(gl)EMYK_
ANXA2	Ubiquitylation	K176	-0.855	0.760	_LMVALAK(gl)GR_
ANXA2	Ubiquitylation	K204	0.375	1.026	_DLYDAGVK(gl)R_
ANXA2	Ubiquitylation	K206	-0.599		_DLYDAGVK(gl)RK_
ANXA2	Ubiquitylation	K302	0.390		_SEVDMLK(gl)IR_
ANXA2	Ubiquitylation	K324	0.768	0.350	_SLYYYIQQDTK(gl)GDYQK_
ATG2B	Phosphorylation	S239	-0.423	-0.513	_S(ph)SPVCSTAPVETEPK_
ATG2B	Phosphorylation	S240	-0.423	-0.513	_S(ph)SPVCSTAPVETEPK_
ATG2B	Phosphorylation	S497	1.523	0.570	_SVS(ph)VDESRPELIFR_
ATG2B	Phosphorylation	S1579	-0.595	0.128	_SYIS(ph)PHSSPSHTPTR_
CAV1	Ubiquitylation	K5	0.591	0.963	_(ac)SGGK(gl)YVDSEGHLYTVPIR_
CAV1	Phosphorylation	S6	0.836	0.688	_(ac)ADELS(ph)EKQVYDAHTK_
CAV1	Ubiquitylation	K8	0.244	0.734	_(ac)ADELSEK(gl)QVYDAHTK_
CAV1	Ubiquitylation	K26	0.724	0.894	_EQGNIYK(gl)PNNK_
CAV1	Ubiquitylation	K30	-0.008	0.317	_EQGNIYKPNNK(gl)AMADELSEK_
CAV1	Ubiquitylation	K39	0.690	1.170	_AMADELSEK(gl)QVYDAHTK_
CAV1	Phosphorylation	S76	0.607	0.527	_AMADELS(ph)EK_
CAV1	Ubiquitylation	K176		-0.259	_INLQK(gl)EI_
CKAP4	Ubiquitylation	K21	-0.706		_GGHGAASPSEK(gl)GAHPSGGADDVAK_
CKAP4	Ubiquitylation	K78	0.055		_GGGGGGGK(gl)SSSSSSASAAAAAAAASSSASCSR_
CKAP4	Ubiquitylation	K301	-0.838	-0.786	_EAVKEIQTSAK(gl)SR_
CYB5R3	Ubiquitylation	K42	-1.893	-1.012	_STPAITLESPDIK(gl)YPLR_
CYB5R3	Ubiquitylation	K115	-0.445	-0.904	_VYFK(gl)DTHPK_
CYB5R3	Ubiquitylation	K120	-1.238		_DTHPK(gl)FPAGGK_
CYB5R3	Ubiquitylation	K163	0.544	-0.128	_FAIRPDK(gl)K_
CYB5R3	Ubiquitylation	K164	-0.539	-1.580	_K(gl)SNPIIR_
EHD1	Ubiquitylation	K475	-0.521	-0.192	_SK(gl)LPNTVLGK_
FAF2	Ubiquitylation	K167	-0.301	-0.107	_AHPVFYQGTYSQALNDAK(gl)R_
FAF2	Ubiquitylation	K307	0.171		_QQQDEAYLASLRADQEK(gl)ER_
FAF2	Ubiquitylation	K329	-1.007		_RKEEEVQQQK(gl)LAEER_
FAF2	Ubiquitylation	K367	-0.571	0.313	_IIFK(gl)LPNDSR_
FAF2	Ubiquitylation	K400	-1.040		_ESPEK(gl)FQIEANFPR_
GAPDH	Ubiquitylation	K61	0.521	0.820	_FHGTVK(gl)AENGK_
GAPDH	Ubiquitylation	K66	-0.023		_FHGTVKAENGK(gl)_
GAPDH	Ubiquitylation	K86	0.473		_IK(gl)WGDAGAEYVVESTGVFTTMEK_
GAPDH	Ubiquitylation	K117	1.371		_AGAHLQGGAK(gl)R_
GAPDH	Ubiquitylation	K145	0.536	0.707	_YDNSLK(gl)IISNASCTTNCLAPLAK_
GAPDH	Ubiquitylation	K194	0.139	0.426	_TVDGPSGK(gl)LWR_
GAPDH	Ubiquitylation	K215	0.068	0.425	_GALQNIIPASTGAAK(gl)AVGK_
GAPDH	Ubiquitylation	K219		0.588	_GALQNIIPASTGAAKAVGK(gl)_
GAPDH	Ubiquitylation	K254	-0.005		_LEKPAK(gl)YDDIKK_
GAPDH	Ubiquitylation	K259	-0.052	0.054	_LEKPAKYDDIK(gl)K_
GAPDH	Ubiquitylation	K260	0.061	-0.269	_LEKPAKYDDIKK(gl)_
GAPDH	Ubiquitylation	K263	-0.140	0.790	_VVK(gl)QASEGPLK_
HSD17B11	Ubiquitylation	K105	0.534	-0.011	_EDIYSSAK(gl)K_
HSD17B11	Ubiquitylation	K106	0.534	-0.011	_EDIYSSAK(gl)K_
KATNA1	Phosphorylation	S170	-0.150	0.049	_NKS(ph)PAAVTEPETNK_
LPCAT1	Ubiquitylation	K191	-1.958	-0.654	_TVEEIK(gl)R_
LPCAT1	Ubiquitylation	K221		-2.397	_TCLITFK(gl)PGAFIPGAPVQPVVLR_
LPCAT1	Ubiquitylation	K347	-0.307		_GLGLKPEK(gl)_
LPCAT2	Ubiquitylation	K204		0.014	_NTINEIIK(gl)R_
LSS	Ubiquitylation	K15	-1.837	-2.018	_GGPYK(gl)TEPATDLGR_
LSS	Ubiquitylation	K65	-1.467	-1.119	_NYFK(gl)DLPK_
LSS	Ubiquitylation	K432	-1.819	-1.131	_LSQVPDNPPDYQK(gl)YYR_
LSS	Ubiquitylation	K506	-1.598	-1.214	_NPDGGFATYETK(gl)R_
METTL7A	Ubiquitylation	K105	-1.384	-0.472	_VTCIDPNPNFEK(gl)FLIK_
METTL7A	Ubiquitylation	K109		0.752	_FLIK(gl)SIAENR_
METTL7A	Ubiquitylation	K219	-0.716	0.645	_ASFSK(gl)LK_
PNPLA2	Ubiquitylation	K74		2.159	_FIEVSK(gl)EAR_
PNPLA2	Ubiquitylation	K224		-1.529	_LSK(gl)ALFPPEPLVLR_
PNPLA2	Ubiquitylation	K239		-0.062	_EMCK(gl)QGYR_
PNPLA2	Phosphorylation	S404	-0.856	-0.095	_VQS(ph)LPSVPLSCAAYR_
PRPF19	Ubiquitylation	K122	0.200		_LTK(gl)EVTAAR_
PRPF19	Ubiquitylation	K261	-1.023	0.257	_SSEQILATLK(gl)GHTK_
RAP1B	Ubiquitylation	K174	0.197		_KTPVPGK(gl)AR_
SCCPDH	Ubiquitylation	K220	-1.568	-0.727	_NVSNLK(gl)PVPLIGPK_
SCCPDH	Ubiquitylation	K242	-0.619	-0.190	_ELK(gl)GYSIPFMGSDVSVVR_
SPG20	Ubiquitylation	K47	0.528		_NYYK(gl)QGIGHLLR_
SPG20	Ubiquitylation	K82	0.642		_MK(gl)ETLQNVR_
SPG20	Ubiquitylation	K362	0.131	-0.424	_TRPSSDQLK(gl)EASGTDVK(gl)QLDQGNK_
SPG20	Ubiquitylation	K370	0.203	0.288	_TRPSSDQLKEASGTDVK(gl)QLDQGNK_
SPG20	Ubiquitylation	K377	0.603	0.513	_QLDQGNK(gl)DVR_
SPG20	Ubiquitylation	K414	-1.501	-1.530	_DTSSEEVNLSHIVPCEPVPEEKPK(gl)_
SPG20	Ubiquitylation	K447	0.472	0.432	_GAEITGK(gl)AIQK_
SPG20	Ubiquitylation	K465	-0.598	-0.123	_IQPEEK(gl)PVEVSPAVTK_
SPG20	Phosphorylation	S470		-0.392	_IQPEEKPVEVS(ph)PAVTK_
SPG20	Ubiquitylation	K475	-1.095	-1.020	_IQPEEKPVEVSPAVTK(gl)GLYIAK_
SPG20	Ubiquitylation	K481	0.461	0.723	_GLYIAK(gl)QATGGAAK_
SPG20	Ubiquitylation	K514	-0.007	-0.114	_ELAPHVK(gl)K_
SPG20	Ubiquitylation	K515	0.330	-0.002	_ELAPHVKK(gl)_
SPG20	Ubiquitylation	K519	-0.213		_HGSK(gl)LVPESLKK_
SPG20	Ubiquitylation	K526	-0.110	0.007	_LVPESLK(gl)K_
SPG20	Ubiquitylation	K651	0.342	0.030	_ENQEGAANVNVRGEK(gl)DEQTK_
VCP	Phosphorylation	S3	0.795	1.142	_(ac)AS(ph)GADSKGDDLSTAILK_
VCP	Phosphorylation	S7	0.312	0.941	_(ac)ASGADS(ph)KGDDLSTAILK_
VCP	Ubiquitylation	K8	-0.439	-0.154	_(ac)ASGADSK(gl)GDDLSTAILK_
VCP	Ubiquitylation	K18	-0.452	0.181	_GDDLSTAILK(gl)QK_
VCP	Ubiquitylation	K20	-0.512	0.529	_(ac)ASGADSKGDDLSTAILKQK(gl)_
VCP	Ubiquitylation	K60	0.678	0.493	_GDTVLLK(gl)GKK_
VCP	Ubiquitylation	K81	0.084		_EAVCIVLSDDTCSDEK(gl)IR_
VCP	Ubiquitylation	K109	-0.847	-0.260	_LGDVISIQPCPDVK(gl)YGK(gl)R_
VCP	Ubiquitylation	K112	-0.736	-0.276	_LGDVISIQPCPDVK(gl)YGK(gl)R_
VCP	Ubiquitylation	K148	-0.262	-0.087	_K(gl)GDIFLVR_
VCP	Ubiquitylation	K211	1.383	0.902	_K(gl)QLAQIK_
VCP	Ubiquitylation	K236	-0.526	-0.178	_AIGVK(gl)PPR_
VCP	Ubiquitylation	K251	-0.110		_GILLYGPPGTGK(gl)TLIAR_
VCP	Ubiquitylation	K336	0.522		_IVSQLLTLMDGLK(gl)QR_
VCP	Ubiquitylation	K386	1.339	0.706	_LEILQIHTK(gl)NM(ox)K_
VCP	Ubiquitylation	K389	0.568	1.195	_LEILQIHTKNMK(gl)_
VCP	Ubiquitylation	K505	0.377	0.794	_FLK(gl)FGMTPSK_
VCP	Ubiquitylation	K524		-0.528	_GVLFYGPPGCGK(gl)TLLAK_
VCP	Ubiquitylation	K529		-0.250	_GVLFYGPPGCGKTLLAK(gl)_
VCP	Ubiquitylation	K565	0.645	0.689	_EIFDK(gl)AR_
VCP	Ubiquitylation	K615	1.209	1.270	_VINQILTEMDGMSTKK(gl)_
VCP	Ubiquitylation	K651	-1.709	-0.719	_LDQLIYIPLPDEK(gl)SR_
VCP	Ubiquitylation	K658	0.362	0.711	_VAILK(gl)ANLR_
VCP	Ubiquitylation	K663	-0.839		_K(gl)SPVAKDVDLEFLAK_
VCP	Ubiquitylation	K668	-0.536	0.265	_SPVAK(gl)DVDLEFLAK_
VCP	Ubiquitylation	K696	1.574	1.691	_ACK(gl)LAIR_
VCP	Ubiquitylation	K754	0.510	0.939	_K(gl)YEMFAQTLQQSR_