RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
ATRX	2	0.050	0.010				0.582	0.629
DNMT1	2	0.150	-0.150		0.077	-0.109	-1.422	0.572
DNMT1	2	0.150	-0.150	0.134			-0.347	-0.054
SMARCAD1	2	0.070	0.540	-0.030	1.060	0.612	0.381	0.353
TOP2B	1	0.830	-0.650	-1.137			0.859	0.666
TCP1	1	0.910	-0.350	-0.279	-0.943	-0.582	0.460	0.439
HDAC2	1	-2.390	4.970
HDAC2	1	-2.390	4.970	0.187	-0.007	0.825
MBD3	0	0.730	-1.260	0.210	0.189	0.976	0.079	0.453
DNMT3B	0	0.990	-0.100				0.783	0.015
CBX5	0	0.350	-0.490	0.332	-0.485	0.744	0.961	0.512
SALL4	0	0.590	0.130	-0.080	0.063	0.213	0.247	0.009
SALL1	0			-0.080	0.063	0.213	0.247	0.009
ORC2	0	-1.110	1.470		-0.064	0.370	-0.139	-0.210
SMARCA4	0	-0.810	1.520	0.629	-0.158	0.141	0.337	0.333
MBD2	0	-1.430	2.250		0.312	1.033
MBD1	0	0.490	-0.120				-0.298
RRP1B	0	1.440	-0.810			0.280	-0.192	0.373
CBX6	0	1.520	-1.160

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ATRX	Phosphorylation	S34	-0.115	-0.055	_LHDFLAHSSEESEETSS(ph)PPR_
ATRX	Phosphorylation	S92	-0.219	-0.386	_YVES(ph)DDEKPLDDETVNEDASNENSENDITMQSLPK_
ATRX	Phosphorylation	S313	0.766	0.451	_VYEHTS(ph)RFSPK_
ATRX	Phosphorylation	S316		0.668	_VYEHTSRFS(ph)PK_
ATRX	Ubiquitylation	K403	0.759		_SVLADIK(gl)K_
ATRX	Ubiquitylation	K404	0.759		_SVLADIK(gl)K_
ATRX	Phosphorylation	S596		0.021	_LTPVSLS(ph)NSPIKGADCQEVPQDKDGYK_
ATRX	Phosphorylation	S598	-0.157	-0.195	_LTPVSLSNS(ph)PIK_
ATRX	Phosphorylation	S677	0.048	0.009	_RPTETNPVTSNS(ph)DEECNETVKEK_
ATRX	Phosphorylation	S819	0.797	0.578	_RQTQSESSNYDS(ph)ELEKEIK_
ATRX	Phosphorylation	S871	3.829	4.009	_NLKTS(ph)QEGSSDDAER_
ATRX	Phosphorylation	T887	1.203	1.421	_ET(ph)FSSAEGTVDKDTTIMELR_
ATRX	Phosphorylation	S889	0.942		_ETFS(ph)SAEGTVDKDTTIMELR_
ATRX	Phosphorylation	S1061	1.043	0.887	_KDELS(ph)DYAEK_
ATRX	Phosphorylation	S1527	-0.080	0.235	_EVIEIEDAS(ph)PTKCPITTK_
ATRX	Ubiquitylation	K2182		-0.315	_QVTK(gl)QSLSFR_
CBX5	Phosphorylation	S14	-0.620	0.260	_RTADSSSS(ph)EDEEEYVVEK_
CBX5	Ubiquitylation	K32	1.081		_VVK(gl)GQVEYLLK_
CBX5	Ubiquitylation	K68	1.329		_NLDCPELISEFMK(gl)K_
CBX5	Ubiquitylation	K69	0.893		_NLDCPELISEFMKK(gl)_
CBX5	Ubiquitylation	K91	1.360		_K(gl)SNFSNSADDIK_
CBX5	Phosphorylation	S92	0.064	-0.325	_RKS(ph)NFSNSADDIK_
CBX5	Ubiquitylation	K102	1.233	1.344	_KSNFSNSADDIK(gl)SK_
CBX5	Ubiquitylation	K154	0.568	0.740	_WKDTDEADLVLAK(gl)EANVK_
CBX6	Ubiquitylation	K33	-0.153		_WK(gl)GWAIK_
CBX6	Ubiquitylation	K100	-0.870		_ISDVHFSVK(gl)PSASASSPK_
CBX6	Phosphorylation	S102		-0.668	_ISDVHFSVKPS(ph)ASASSPK_
CBX6	Phosphorylation	S107	-0.886	-0.601	_ISDVHFSVKPSASASS(ph)PK_
CBX6	Phosphorylation	S280	-2.280	-1.542	_SSGSSGCPS(ph)PTPQSSDPDDTPPK_
CBX6	Phosphorylation	S301		0.842	_LLPETVS(ph)PSAPSWR_
DNMT1	Phosphorylation	S127	-0.755	-0.836	_VGM(ox)ADANS(ph)PPKPLSKPR_
DNMT1	Phosphorylation	S143	0.877	0.220	_SKS(ph)DGEAKPEPSPSPR_
DNMT1	Phosphorylation	S152	-0.685	-1.347	_SDGEAKPEPS(ph)PSPR_
DNMT1	Phosphorylation	S154	-1.926	-0.876	_SDGEAKPEPSPS(ph)PR_
DNMT1	Ubiquitylation	K586	1.686	3.368	_DLIK(gl)LAGVTLGQR_
DNMT1	Ubiquitylation	K675	1.267	0.915	_DMVK(gl)FGGSGR_
DNMT1	Phosphorylation	S714	-0.773	-0.554	_EADDDEEVDDNIPEMPS(ph)PKK_
DNMT1	Phosphorylation	S954	-0.318	0.057	_LSS(ph)PVKRPR_
DNMT1	Ubiquitylation	K961	-3.166		_K(gl)EPVDEDLYPEHYR_
DNMT1	Ubiquitylation	K981	-0.298	-1.482	_YSDYIK(gl)GSNLDAPEPYR_
DNMT1	Ubiquitylation	K997	0.042	0.154	_IK(gl)EIFCPK_
DNMT1	Ubiquitylation	K1483	1.983	-0.103	_GVCSCVEAGK(gl)ACDPAAR_
DNMT3B	Ubiquitylation	K597	0.236		_ELGIK(gl)VGK_
DNMT3B	Ubiquitylation	K623	0.433		_HEGNIK(gl)YVNDVR_
HDAC2	Ubiquitylation	K50	0.036		_K(gl)MEIYRPHK_
HDAC2	Ubiquitylation	K67		-0.467	_ATAEEMTK(gl)YHSDEYIK_
HDAC2	Ubiquitylation	K89	0.749	-0.241	_SIRPDNMSEYSK(gl)QMQR_
HDAC2	Ubiquitylation	K284	0.749		_GHAK(gl)CVEVVK_
HDAC2	Phosphorylation	S394	-0.865	-0.997	_M(ox)LPHAPGVQM(ox)QAIPEDAVHEDS(ph)GDEDGEDPDKR_
HDAC2	Phosphorylation	S422	0.482	0.781	_IACDEEFS(ph)DSEDEGEGGR_
MBD1	Ubiquitylation	K110	0.094		_AHPVAVASK(gl)K_
MBD1	Ubiquitylation	K111	0.094		_AHPVAVASK(gl)K_
MBD1	Phosphorylation	S362	-0.412	-0.135	_ALAPS(ph)PPAEFIYYCVDEDELQPYTNRR_
MBD1	Ubiquitylation	K434	0.418		_QCLQFAMK(gl)R_
MBD1	Phosphorylation	T621		-0.248	_LAPEEEAGGAGT(ph)PVITEIFSLGGTR_
MBD2	Ubiquitylation	K185	0.919		_SDVYYFSPSGK(gl)K_
MBD3	Ubiquitylation	K42	-0.711		_DVFYYSPSGKK(gl)_
MBD3	Phosphorylation	S56	0.663	0.474	_YLGGS(ph)MDLSTFDFR_
MBD3	Phosphorylation	S85	0.574	0.485	_VRYDS(ph)SNQVK_
MBD3	Ubiquitylation	K92	-0.542		_GK(gl)PDLNTALPVR_
MBD3	Ubiquitylation	K124	0.195		_ITNHPSNKVK(gl)_
MBD3	Ubiquitylation	K129	-0.498		_SDPQK(gl)AVDQPR_
ORC2	Phosphorylation	T116	-0.144	-1.304	_LASELAKT(ph)PQK_
ORC2	Phosphorylation	T226	-0.976	-1.179	_VVSAPVGKET(ph)PSK_
ORC2	Phosphorylation	S228	-0.380	-0.851	_VVSAPVGKETPS(ph)KR_
RRP1B	Ubiquitylation	K198		0.360	_FIDPFCK(gl)IAAK_
RRP1B	Phosphorylation	S245	0.232	0.389	_VGDGDLS(ph)AEEIPENEVSLRR_
RRP1B	Phosphorylation	S513	-0.434	-0.055	_GS(ph)PTGGAQLLK_
RRP1B	Phosphorylation	S706	-0.797	-0.320	_SILVS(ph)PTGPSR_
RRP1B	Phosphorylation	T728	-1.022	-0.602	_T(ph)PTSSPAS(ph)SPLVAK_
RRP1B	Phosphorylation	S731	-0.453	-0.306	_TPTS(ph)SPAS(ph)SPLVAK_
RRP1B	Phosphorylation	S732	-0.508	-0.201	_TPTSS(ph)PASSPLVAK_
RRP1B	Phosphorylation	S735	-0.977	-0.602	_T(ph)PTSSPAS(ph)SPLVAK_
RRP1B	Phosphorylation	S736	-0.915	-0.909	_TPTSS(ph)PASS(ph)PLVAK_
SALL1	Phosphorylation	S1119	-1.156	-1.235	_DTPTSHVPSGPLSSSATS(ph)PVLLPALPR_
SALL4	Phosphorylation	S1119	-1.156	-1.235	_DTPTSHVPSGPLSSSATS(ph)PVLLPALPR_
SMARCA4	Ubiquitylation	K357	-0.934		_ITPIQK(gl)PR_
SMARCA4	Ubiquitylation	K405	0.109	1.148	_ATIELK(gl)ALR_
SMARCA4	Ubiquitylation	K437	-0.317		_DTALETALNAK(gl)AYKR_
SMARCA4	Ubiquitylation	K455	0.225		_ITEK(gl)LEK_
SMARCA4	Ubiquitylation	K496		0.923	_SVTGK(gl)IQK_
SMARCA4	Phosphorylation	S677	-0.880	-0.324	_KAENAEGQTPAIGPDGEPLDETSQMS(ph)DLPVK_
SMARCA4	Ubiquitylation	K1283	0.125		_ILAAAK(gl)YK_
SMARCA4	Phosphorylation	S1413	-0.265	0.515	_EVDYSDS(ph)LTEK_
SMARCA4	Phosphorylation	S1486	-0.713	-0.935	_LS(ph)PNPPNLTK_
SMARCAD1	Phosphorylation	T54	-0.579	-0.089	_ANT(ph)PDSDITEK_
SMARCAD1	Phosphorylation	S79	1.866	0.866	_KAS(ph)ISYFK_
SMARCAD1	Phosphorylation	S95		-0.165	_GIQYIDLS(ph)SDSEDVVSPNCSNTVQEK_
SMARCAD1	Phosphorylation	S152	1.382	1.569	_RNDDISELEDLS(ph)ELEDLKDAK_
SMARCAD1	Phosphorylation	S211		0.248	_KLS(ph)SSSEPYEEDEFNDDQSIKK_
TCP1	Ubiquitylation	K109	-0.135	0.674	_NADELVK(gl)QK_
TCP1	Ubiquitylation	K126	-0.013	0.696	_LACK(gl)EAVR_
TCP1	Ubiquitylation	K153		1.172	_DCLINAAK(gl)TSMSSK_
TCP1	Ubiquitylation	K365	2.257		_ICDDELILIK(gl)NTK_
TCP1	Ubiquitylation	K400	0.670	0.460	_SLHDALCVVK(gl)R_
TCP1	Ubiquitylation	K532	-0.204	-0.345	_IDDLIK(gl)LHPESK_
TCP1	Phosphorylation	S544	0.593	0.207	_HGS(ph)YEDAVHSGALND_
TOP2B	Ubiquitylation	K205		0.226	_FTVETACK(gl)EYK_
TOP2B	Ubiquitylation	K221		-0.165	_QTWMNNMMK(gl)TSEAK_
TOP2B	Ubiquitylation	K373		-0.347	_AGVSVK(gl)PFQVK_
TOP2B	Ubiquitylation	K412		-0.274	_SFGSK(gl)CQLSEK_
TOP2B	Ubiquitylation	K550		0.643	_SYDDAESLK(gl)TLR_
TOP2B	Ubiquitylation	K643		-0.133	_GLGTSTAK(gl)EAK_
TOP2B	Ubiquitylation	K646		0.051	_EAK(gl)EYFADMER_
TOP2B	Ubiquitylation	K676		-0.188	_YAGPEDDAAITLAFSK(gl)K_
TOP2B	Ubiquitylation	K677		-0.188	_YAGPEDDAAITLAFSK(gl)K_
TOP2B	Ubiquitylation	K1079		0.700	_FILEK(gl)IQGK_
TOP2B	Ubiquitylation	K1227		-0.462	_K(gl)LQLEETMPSPYGR_
TOP2B	Ubiquitylation	K1250		-0.673	_RIIPEITAM(ox)K(gl)ADASK_
TOP2B	Phosphorylation	S1400	-0.221	-0.192	_VKAS(ph)PITNDGEDEFVPSDGLDKDEYTFSPGK_
TOP2B	Phosphorylation	T1403	-0.017	-0.156	_VKASPIT(ph)NDGEDEFVPSDGLDKDEYTFSPGK_
TOP2B	Phosphorylation	S1413	-0.430	-0.661	_ASPITNDGEDEFVPS(ph)DGLDKDEYTFSPGK_
TOP2B	Phosphorylation	T1422	-0.362		_VKAS(ph)PITNDGEDEFVPSDGLDKDEYT(ph)FSPGK_
TOP2B	Phosphorylation	S1424	-1.672	-1.441	_ASPITNDGEDEFVPSDGLDKDEYTFS(ph)PGK_
TOP2B	Phosphorylation	S1454		1.291	_KSQDFGNLFSFPSYS(ph)QK_
TOP2B	Phosphorylation	S1466	-0.324	-0.202	_FDS(ph)NEEDSASVFSPSFGLK_
TOP2B	Phosphorylation	S1552	2.808		_ASGS(ph)ENEGDYNPGRK_
TOP2B	Phosphorylation	S1581	-0.797	-1.005	_KTSFDQDS(ph)DVDIFPSDFPTEPPSLPR_