bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

bioLOGIC Data


Exact search


Query: SMARCAD1

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
SMARCAD1 2 6.351 0.070 0.540 -0.030 1.060 0.612 0.381 0.353

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
SMARCAD1 Phosphorylation S152 1.382 1.569 _RNDDISELEDLS(ph)ELEDLKDAK_
SMARCAD1 Phosphorylation S79 1.866 0.866 _KAS(ph)ISYFK_
SMARCAD1 Phosphorylation S211 0.248 _KLS(ph)SSSEPYEEDEFNDDQSIKK_
SMARCAD1 Phosphorylation T54 -0.579 -0.089 _ANT(ph)PDSDITEK_
SMARCAD1 Phosphorylation S95 -0.165 _GIQYIDLS(ph)SDSEDVVSPNCSNTVQEK_

Background Information for SMARCAD1:


Pubmed-SMARCAD1 »
Uniprot-SMARCAD1 »
Biogrid-SMARCAD1 »
ProteomicsDB-SMARCAD1 »

Tumorportal-SMARCAD1 »
COSMIC-SMARCAD1 »
GenomeRNAi-SMARCAD1 »
Genecards-SMARCAD1


Protein-protein Interactions for SMARCAD1
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait EPHA2 Cat. description Hein, Mann, Cell 2015
Category members IP bait DOK4 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait TRMT2A Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait ZNF211 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait ZNF214 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait ZNF324B Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait ZNF550 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait ZNF562 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait ZNF669 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait ZNF764 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait ZNF785 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait ZNF816 Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in SMARCAD1
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members SNF2_N IPR000330 3.38
Category members P-loop_NTPase IPR027417 2.83
Category members Helicase_C IPR001650 2.48
Category members Helicase_ATP-bd IPR014001 2.48
Category members Helicase/UvrB_dom IPR006935 0.78
Category members UBA-like IPR009060 0.17
Category members CUE IPR003892 0


Protein complexes (CORUM database) featuring SMARCAD1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring SMARCAD1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005634 nucleus Database INF
Category members GO Category GO:0005524 ATP binding Database 5.54
Category members GO Category GO:0000792 heterochromatin Database 5.45
Category members GO Category GO:0006338 chromatin remodeling Database 4.95
Category members GO Category GO:0004386 helicase activity Database 2.49
Category members GO Category GO:0016363 nuclear matrix Database 1.89
Category members GO Category GO:0003677 DNA binding Database 1.53
Category members GO Category GO:0043044 ATP-dependent chromatin remodeling Database 1.41
Category members GO Category GO:0003676 nucleic acid binding Database 0.83
Category members GO Category GO:0035861 site of double-strand break Database 0.65
Category members GO Category GO:0000018 regulation of DNA recombination Database 0.5
Category members GO Category GO:0070933 histone H4 deacetylation Database 0.37
Category members GO Category GO:0051304 chromosome separation Database 0.35
Category members GO Category GO:0045893 positive regulation of transcription, DNA-dependent Database 0.28
Category members GO Category GO:0043596 nuclear replication fork Database 0.23
Category members GO Category GO:0016787 hydrolase activity Database 0.22
Category members GO Category GO:0016568 chromatin modification Database 0.18
Category members GO Category GO:0000729 DNA double-strand break processing Database 0
Category members GO Category GO:0009117 nucleotide metabolic process Database 0
Category members GO Category GO:0051260 protein homooligomerization Database 0
Category members GO Category GO:0070932 histone H3 deacetylation Database 0


.

© Copyright Svejstrup Laboratory 2015