RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
RAD50	3	0.350	-0.420	0.165	0.571	0.509	0.691	0.587
NBN	2	-0.220	-0.170		0.708	0.569	-0.563	0.354
ATF2	2	-1.380	1.800
SMARCAD1	2	0.070	0.540	-0.030	1.060	0.612	0.381	0.353
VCP	2	1.650	-0.640	-0.182	0.578	-0.596	0.007	-0.036
RNF168	1	-0.220	-0.130	2.341
RNF168	1	0.210	-0.350	2.341
MRE11A	0	1.600	-0.730		0.145	0.420
MRE11A	0	1.600	-0.730	0.023			0.453	0.150
RNF8	0	1.030	-0.670
RNF169	0	-0.910	0.600

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ATF2	Phosphorylation	T71	-1.263	-1.166	_NDSVIVADQTPT(ph)PTR_
ATF2	Phosphorylation	S90	2.624	2.389	_NCEEVGLFNELAS(ph)PFENEFKK_
ATF2	Phosphorylation	S112	1.025	1.118	_MPLDLS(ph)PLATPIIR_
MRE11A	Ubiquitylation	K387	0.442		_FSQK(gl)FVDR_
NBN	Phosphorylation	T335		-1.121	_T(ph)TTPGPSLSQGVSVDEK_
NBN	Phosphorylation	S341	3.085		_TTTPGPS(ph)LSQGVSVDEK_
NBN	Phosphorylation	S343	3.710	3.629	_TTTPGPSLS(ph)QGVSVDEK_
NBN	Phosphorylation	S397	2.719	1.458	_MLS(ph)QDAPTVK_
NBN	Phosphorylation	S432	-0.192	-0.395	_IPNYQLS(ph)PTK_
NBN	Phosphorylation	T434	-0.188	-0.683	_IPNYQLSPT(ph)KLPSINK_
NBN	Phosphorylation	S615	1.985	4.691	_IS(ph)QENEIGKK_
RAD50	Ubiquitylation	K62	-1.069		_YICTGDFPPGTK(gl)GNTFVHDPK_
RAD50	Phosphorylation	S635	2.474	3.050	_LFDVCGS(ph)QDFESDLDR_
RAD50	Ubiquitylation	K753	0.394	0.397	_NK(gl)LQNVNR_
RAD50	Ubiquitylation	K933	0.397		_FQQEKEELINKK(gl)_
RAD50	Ubiquitylation	K1068	0.098		_LEENIDNIK(gl)R_
RAD50	Ubiquitylation	K1178	-0.548		_SDADENVSASDK(gl)RR_
RAD50	Ubiquitylation	K1285	2.195		_SEYVEK(gl)FYR_
RNF168	Phosphorylation	S134		0.945	_RAS(ph)EEEENKASEEYIQR_
RNF168	Ubiquitylation	K227	-1.466	-1.424	_NTGDIQK(gl)YLTPK_
RNF168	Ubiquitylation	K232		-1.889	_YLTPK(gl)SQFGSASHSEAVQEVR_
RNF168	Ubiquitylation	K254	-1.121		_DSVSK(gl)DIDSSDRK_
RNF168	Ubiquitylation	K334	-0.908		_ELCVLSHERPK(gl)TR_
RNF168	Ubiquitylation	K341	-1.460	-1.996	_VPYSK(gl)ETAVMPCGR_
RNF168	Ubiquitylation	K468	-0.810	-1.113	_QK(gl)GSPDEYHLR_
RNF168	Ubiquitylation	K548	-2.498		_VSK(gl)SAHSLQPSISQK_
RNF169	Ubiquitylation	K691	-0.756	-0.617	_K(gl)GSVDQYLLR_
RNF8	Phosphorylation	S157	-0.377	-0.438	_KFS(ph)LDELAGPGAEGPSNLK_
SMARCAD1	Phosphorylation	T54	-0.579	-0.089	_ANT(ph)PDSDITEK_
SMARCAD1	Phosphorylation	S79	1.866	0.866	_KAS(ph)ISYFK_
SMARCAD1	Phosphorylation	S95		-0.165	_GIQYIDLS(ph)SDSEDVVSPNCSNTVQEK_
SMARCAD1	Phosphorylation	S152	1.382	1.569	_RNDDISELEDLS(ph)ELEDLKDAK_
SMARCAD1	Phosphorylation	S211		0.248	_KLS(ph)SSSEPYEEDEFNDDQSIKK_
VCP	Phosphorylation	S3	0.795	1.142	_(ac)AS(ph)GADSKGDDLSTAILK_
VCP	Phosphorylation	S7	0.312	0.941	_(ac)ASGADS(ph)KGDDLSTAILK_
VCP	Ubiquitylation	K8	-0.439	-0.154	_(ac)ASGADSK(gl)GDDLSTAILK_
VCP	Ubiquitylation	K18	-0.452	0.181	_GDDLSTAILK(gl)QK_
VCP	Ubiquitylation	K20	-0.512	0.529	_(ac)ASGADSKGDDLSTAILKQK(gl)_
VCP	Ubiquitylation	K60	0.678	0.493	_GDTVLLK(gl)GKK_
VCP	Ubiquitylation	K81	0.084		_EAVCIVLSDDTCSDEK(gl)IR_
VCP	Ubiquitylation	K109	-0.847	-0.260	_LGDVISIQPCPDVK(gl)YGK(gl)R_
VCP	Ubiquitylation	K112	-0.736	-0.276	_LGDVISIQPCPDVK(gl)YGK(gl)R_
VCP	Ubiquitylation	K148	-0.262	-0.087	_K(gl)GDIFLVR_
VCP	Ubiquitylation	K211	1.383	0.902	_K(gl)QLAQIK_
VCP	Ubiquitylation	K236	-0.526	-0.178	_AIGVK(gl)PPR_
VCP	Ubiquitylation	K251	-0.110		_GILLYGPPGTGK(gl)TLIAR_
VCP	Ubiquitylation	K336	0.522		_IVSQLLTLMDGLK(gl)QR_
VCP	Ubiquitylation	K386	1.339	0.706	_LEILQIHTK(gl)NM(ox)K_
VCP	Ubiquitylation	K389	0.568	1.195	_LEILQIHTKNMK(gl)_
VCP	Ubiquitylation	K505	0.377	0.794	_FLK(gl)FGMTPSK_
VCP	Ubiquitylation	K524		-0.528	_GVLFYGPPGCGK(gl)TLLAK_
VCP	Ubiquitylation	K529		-0.250	_GVLFYGPPGCGKTLLAK(gl)_
VCP	Ubiquitylation	K565	0.645	0.689	_EIFDK(gl)AR_
VCP	Ubiquitylation	K615	1.209	1.270	_VINQILTEMDGMSTKK(gl)_
VCP	Ubiquitylation	K651	-1.709	-0.719	_LDQLIYIPLPDEK(gl)SR_
VCP	Ubiquitylation	K658	0.362	0.711	_VAILK(gl)ANLR_
VCP	Ubiquitylation	K663	-0.839		_K(gl)SPVAKDVDLEFLAK_
VCP	Ubiquitylation	K668	-0.536	0.265	_SPVAK(gl)DVDLEFLAK_
VCP	Ubiquitylation	K696	1.574	1.691	_ACK(gl)LAIR_
VCP	Ubiquitylation	K754	0.510	0.939	_K(gl)YEMFAQTLQQSR_