RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
PML	1	-0.420	0.350		-0.244	0.322
MEF2C	0	-0.980	1.550
MEF2C	0	-0.980	1.550
EYA1	0	-0.440	-0.140
SOX6	0	1.430	-0.800
WNT5A	0
HES1	0	-0.940	0.860
KDR	0	0.860	-0.680
SOX5	0	-0.800	0.810
TGFB1I1	0	0.130	0.160
GFI1	0	0.150	0.340
CASP3	0	0.570	-0.390
RBPJ	0	1.900	-0.160	-0.367	0.284	0.723	-0.090	0.134
SMAD2	0
ERBB4	0
ERBB4	0
SOX2	0	-0.250	0.870

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
CASP3	Ubiquitylation	K11	-0.053	-0.687	_(ac)MENTENSVDSK(gl)SIK_
CASP3	Ubiquitylation	K14	-0.455	-0.687	_SIK(gl)NLEPK_
CASP3	Ubiquitylation	K57	-0.304	-1.817	_NFHK(gl)STGMTSR_
CASP3	Ubiquitylation	K82	-0.268	-0.605	_NLK(gl)YEVR_
ERBB4	Ubiquitylation	K714	0.078		_ILK(gl)ETELKR_
ERBB4	Ubiquitylation	K745	-0.474	0.342	_GIWVPEGETVK(gl)IPVAIK_
ERBB4	Ubiquitylation	K854	-0.859		_NVLVK(gl)SPNHVK_
EYA1	Ubiquitylation	K513		-0.108	_NNVGGLLGPAK(gl)R_
EYA1	Ubiquitylation	K587		-1.219	_IGK(gl)ESCFER_
GFI1	Phosphorylation	S68	0.285	0.145	_DRLS(ph)PESQLTEAPDR_
HES1	Ubiquitylation	K66		0.212	_TLILDALK(gl)K_
HES1	Ubiquitylation	K67		0.212	_TLILDALK(gl)K_
HES1	Ubiquitylation	K109	-0.891		_AQMTAALSTDPSVLGK(gl)YR_
KDR	Ubiquitylation	K1064		-1.119	_DIYK(gl)DPDYVR_
MEF2C	Ubiquitylation	K23		-0.140	_QVTFTK(gl)R_
MEF2C	Phosphorylation	S240	0.008	0.302	_NS(ph)PGLLVSPGNLNK_
MEF2C	Phosphorylation	S406	0.272	0.338	_SEPVS(ph)PPRDR_
PML	Ubiquitylation	K394	0.515	0.360	_LQDLSSCITQGK(gl)DAAVSKK_
PML	Phosphorylation	S403		3.141	_KAS(ph)PEAASTPRDPIDVDLPEEAER_
PML	Ubiquitylation	K476	-0.403	-0.735	_GPSYGEDVSNTTTAQK(gl)R_
PML	Phosphorylation	S504	-0.198	-0.109	_S(ph)SPEQPRPSTSK_
PML	Phosphorylation	S505	-0.198	-0.109	_S(ph)SPEQPRPSTSK_
PML	Phosphorylation	S518	-1.632	-1.605	_AVS(ph)PPHLDGPPS(ph)PR_
PML	Phosphorylation	S527	-1.392	-1.605	_AVS(ph)PPHLDGPPS(ph)PR_
PML	Phosphorylation	S530	0.466	0.093	_S(ph)PVIGSEVFLPNSNHVASGAGEAEER_
PML	Ubiquitylation	K623		-0.784	_IDNETQK(gl)ISQLAAVNR_
SMAD2	Phosphorylation	T8	-0.896	-0.885	_(ac)SSILPFT(ph)PPVVK_
SMAD2	Ubiquitylation	K13	-0.058		_(ac)SSILPFTPPVVK(gl)R_
SOX2	Phosphorylation	S251	0.157	-0.109	_SEASSS(ph)PPVVTSSSHSR_
SOX5	Phosphorylation	S21		0.635	_RPAS(ph)PYGEADGEVAMVTSR_
SOX5	Phosphorylation	S370		-0.512	_LPGIPQGNLGAAVS(ph)PTSIHTDK_
SOX6	Phosphorylation	S98	-0.827	-0.182	_NTSTS(ph)PHKPDEGSR_
TGFB1I1	Phosphorylation	S68	-0.772	-0.697	_S(ph)PKPAAPAAPPFSSSSGVLGTGLCELDR_
WNT5A	Ubiquitylation	K268		-0.304	_VGDALK(gl)EK_