RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
SMARCD3	2	0.790	-0.310	0.206			1.501	1.642
LDLRAP1	2	0.870	-0.890
PLK1	2			3.098	-0.387	0.212	-1.949	-0.610
PSEN2	1	-1.820	3.280
ATR	1	-1.040	0.920	0.671			1.041	0.708
BTBD1	0	-0.760	1.580
BTBD1	0	-0.760	1.580
HDAC4	0	1.730	-0.740
PRKACA	0	0.380	-0.680		-1.005	-0.697	0.234	0.487
PSEN1	0	0.930	-1.110
APLP2	0	-0.080	0.400
TGFBR1	0	-0.260	0.020
HDAC5	0	-0.830	1.270
PRMT8	0	-0.720	1.160	-0.002			-0.505	0.005
CAMK1	0	1.160	-0.740
APP	0	0.100	-0.260					0.285
SRC	0	0.050	0.470	-0.031

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
APLP2	Ubiquitylation	K744	-1.204		_HLNK(gl)M(ox)QNHGYENPTYK_
APP	Ubiquitylation	K751	-1.778	-1.280	_HLSK(gl)M(ox)QQNGYENPTYK_
ATR	Ubiquitylation	K32		-0.929	_ELGSATPEEYNTVVQK(gl)PR_
ATR	Phosphorylation	S435	0.516	0.284	_RLS(ph)SSLNPSK_
ATR	Ubiquitylation	K746		-1.823	_NLK(gl)ATSQHECSSSQLK_
ATR	Ubiquitylation	K1019	1.662		_TLGK(gl)QLNVNRR_
ATR	Ubiquitylation	K1600	-0.437		_FQALK(gl)AEK_
ATR	Ubiquitylation	K2106		-0.136	_AYEWEK(gl)AGR_
ATR	Ubiquitylation	K2604	0.657	1.118	_LQGVIK(gl)TR_
BTBD1	Phosphorylation	S30		-2.969	_(ac)ASLGPAAAGEQASGAEAEPGPAGPPPPPS(ph)PSSLGPLLPLQR_
BTBD1	Ubiquitylation	K52	-0.631	-0.663	_EPLYNWQATK(gl)ASLK_
BTBD1	Ubiquitylation	K77	-0.220	-0.149	_FVLGK(gl)GR_
BTBD1	Ubiquitylation	K266		-0.567	_QQLPVTFGNKQK(gl)_
BTBD1	Ubiquitylation	K328		0.015	_GK(gl)ECCINR_
BTBD1	Ubiquitylation	K388	-0.174		_K(gl)QTLGQNDTGFSCDGTANTFR_
BTBD1	Ubiquitylation	K439	0.072		_GPDSHYGTK(gl)GLK_
CAMK1	Ubiquitylation	K49		-0.158	_LVAIK(gl)CIAK_
HDAC4	Phosphorylation	S265		-0.390	_RS(ph)SPLLR_
HDAC4	Phosphorylation	S266	-0.821	-0.598	_RSS(ph)PLLR_
HDAC4	Phosphorylation	S632	-1.146	-0.837	_AQS(ph)SPASATFPVSVQEPPTKPR_
HDAC5	Phosphorylation	S265		-0.390	_RS(ph)SPLLR_
HDAC5	Phosphorylation	S266	-0.821	-0.598	_RSS(ph)PLLR_
LDLRAP1	Ubiquitylation	K5	6.085	8.895	_(ac)MDALK(gl)SAGR_
LDLRAP1	Phosphorylation	S14	-0.662	0.149	_ALIRS(ph)PSLAK_
PLK1	Ubiquitylation	K358	-2.258		_EK(gl)EEPVVR_
PLK1	Ubiquitylation	K574	1.656		_LSLLEEYGCCK(gl)ELASR_
PRKACA	Ubiquitylation	K30	-0.143		_AKEDFLKK(gl)_
PRKACA	Ubiquitylation	K93	0.839	0.714	_QIEHTLNEK(gl)R_
PRMT8	Ubiquitylation	K134	0.077	0.022	_ANK(gl)LDHVVTIIK_
PRMT8	Ubiquitylation	K233	-0.894		_DVAIK(gl)EPLVDVVDPK_
PSEN1	Phosphorylation	S313		0.844	_VSKNS(ph)KYNAESTER_
PSEN1	Ubiquitylation	K314	0.016	0.414	_NSK(gl)YNAESTER_
PSEN1	Phosphorylation	S366	-0.340	0.055	_AAVQELSS(ph)SILAGEDPEER_
PSEN1	Phosphorylation	S367	0.005	0.066	_AAVQELSSS(ph)ILAGEDPEER_
PSEN2	Phosphorylation	S58	-0.112	-0.130	_TSLM(ox)SAES(ph)PTPR_
SRC	Phosphorylation	S17	-0.604	-0.689	_S(ph)LEPAENVHGAGGGAFPASQTPSKPASADGHR_
SRC	Phosphorylation	S75	0.060	0.331	_LFGGFNSSDTVTS(ph)PQR_
TGFBR1	Ubiquitylation	K449	-0.991		_VVCEQK(gl)LRPNIPNR_
TGFBR1	Ubiquitylation	K502	0.553	0.430	_TLSQLSQQEGIK(gl)M_