RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
FOXC1	1	-2.160	3.640	-1.217	-0.424	0.659
MED1	1	0.780	-0.520				-1.530	-0.219
SKI	1	-1.870	2.800		-1.139	-0.588
PKNOX1	1	-1.500	2.500
PKNOX1	1	-1.500	2.500
RCN1	0	0.120	-0.260	0.733			0.693
MAP3K1	0	0.750	-1.270
FKBP8	0	-1.260	1.670				-0.042	0.441
FKBP8	0	-1.260	1.670	-1.108	-0.333	-1.072
GLI3	0	-0.980	1.650
GPD2	0	-0.420	0.270	-0.375			0.478	0.358
RAB3GAP1	0
TWSG1	0	0.420	-0.740
ALDH1A2	0	-1.010	0.740
ABI2	0	-0.850	0.640
BMPR1B	0	-0.810	0.900
SHROOM2	0	1.900	-1.500
SLC25A25	0	-0.380	0.270
ARHGAP35	0	1.030	-0.620	-0.833			0.397	0.020
CHD7	0	0.220	-0.050	-1.168			0.026	0.297
FOXC2	0	0.270	-0.510	-1.217	-0.424	0.659
FOXG1	0	-0.510	1.000	-1.217	-0.424	0.659
FOXG1	0	0.550	-0.250	-1.217	-0.424	0.659

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ABI2	Ubiquitylation	K167	-0.458		_VSTQNMK(gl)MGGLPR_
ABI2	Phosphorylation	S183	-0.737	-0.939	_TTPPTQKPPS(ph)PPMSGK_
ABI2	Phosphorylation	S227	-0.636	-0.480	_NMAPSQQS(ph)PVR_
ALDH1A2	Ubiquitylation	K365		-1.744	_VVGSPFDPTTEQGPQIDK(gl)K_
ALDH1A2	Ubiquitylation	K366		-1.744	_VVGSPFDPTTEQGPQIDK(gl)K_
ALDH1A2	Ubiquitylation	K507		0.123	_EYSEVK(gl)TVTVK_
ARHGAP35	Phosphorylation	S975	-0.388	-0.423	_AGS(ph)PLCNSNLQDSEEDIEPSYSLFR_
ARHGAP35	Phosphorylation	S1072		-0.719	_SVS(ph)SSPWLPQDGFDPSDYAEPMDAVVKPR_
ARHGAP35	Phosphorylation	S1150	1.218	0.094	_KVS(ph)IVSKPVLYR_
ARHGAP35	Phosphorylation	S1179	0.400	0.591	_TSFSVGS(ph)DDELGPIR_
BMPR1B	Ubiquitylation	K477	1.033		_EIVCIK(gl)K_
CHD7	Phosphorylation	S557		-0.452	_VPVHQHS(ph)PSEPFLEKPVPDM(ox)TQVSGPNAQLVK_
CHD7	Phosphorylation	S1874	-0.088	-0.155	_TPFKDEIDEFANS(ph)PSEDKEESMEIHATGK_
CHD7	Phosphorylation	S2533		-0.792	_RTS(ph)LSAEDAEVTK_
CHD7	Phosphorylation	S2559	-0.345	-0.513	_NIPS(ph)PGQLDPDTR_
CHD7	Phosphorylation	S2956	0.383	-0.248	_DGETLEGS(ph)DAEESLDK_
FKBP8	Ubiquitylation	K217	-0.362	-0.356	_VK(gl)CLNNLAASQLK_
FKBP8	Ubiquitylation	K258		-0.292	_GK(gl)VLAQQGEYSEAIPILR_
FKBP8	Ubiquitylation	K278	-1.013	-0.590	_AALK(gl)LEPSNK_
FKBP8	Ubiquitylation	K284	-0.086		_LEPSNK(gl)TIHAELSK_
FOXC1	Phosphorylation	S6	0.325	0.055	_YS(ph)VSSPNSLGVVPYLGGEQSYYR_
FOXC1	Phosphorylation	S235		-1.239	_TENGTCPS(ph)PPQPLS(ph)PAAALGSGSAAAVPK_
FOXC1	Phosphorylation	S241		-1.239	_TENGTCPS(ph)PPQPLS(ph)PAAALGSGSAAAVPK_
FOXC1	Phosphorylation	S259	-0.376	-0.198	_IES(ph)PDSSSSSLSSGSSPPGSLPSAR_
FOXC1	Phosphorylation	S320	0.313	0.178	_GS(ph)PQSAAAELSSGLLASAAASSR_
FOXC1	Phosphorylation	S323		0.347	_GSPQS(ph)AAAELSSGLLASAAASSR_
FOXC1	Ubiquitylation	K554	-0.030	0.013	_TSGAFVYDCSK(gl)F_
FOXC2	Phosphorylation	S6	0.325	0.055	_YS(ph)VSSPNSLGVVPYLGGEQSYYR_
FOXC2	Phosphorylation	S235		-1.239	_TENGTCPS(ph)PPQPLS(ph)PAAALGSGSAAAVPK_
FOXC2	Phosphorylation	S241		-1.239	_TENGTCPS(ph)PPQPLS(ph)PAAALGSGSAAAVPK_
FOXC2	Phosphorylation	S259	-0.376	-0.198	_IES(ph)PDSSSSSLSSGSSPPGSLPSAR_
FOXC2	Phosphorylation	S320	0.313	0.178	_GS(ph)PQSAAAELSSGLLASAAASSR_
FOXC2	Phosphorylation	S323		0.347	_GSPQS(ph)AAAELSSGLLASAAASSR_
FOXC2	Ubiquitylation	K554	-0.030	0.013	_TSGAFVYDCSK(gl)F_
FOXG1	Phosphorylation	S6	0.325	0.055	_YS(ph)VSSPNSLGVVPYLGGEQSYYR_
FOXG1	Phosphorylation	S235		-1.239	_TENGTCPS(ph)PPQPLS(ph)PAAALGSGSAAAVPK_
FOXG1	Phosphorylation	S241		-1.239	_TENGTCPS(ph)PPQPLS(ph)PAAALGSGSAAAVPK_
FOXG1	Phosphorylation	S259	-0.376	-0.198	_IES(ph)PDSSSSSLSSGSSPPGSLPSAR_
FOXG1	Phosphorylation	S320	0.313	0.178	_GS(ph)PQSAAAELSSGLLASAAASSR_
FOXG1	Phosphorylation	S323		0.347	_GSPQS(ph)AAAELSSGLLASAAASSR_
FOXG1	Ubiquitylation	K554	-0.030	0.013	_TSGAFVYDCSK(gl)F_
GLI3	Phosphorylation	S664	-0.582	-0.252	_S(ph)PGRPTQGALGEQQDLSNTTSK_
MAP3K1	Phosphorylation	S292		0.209	_RAPS(ph)PDGFSPYSPEETNR_
MAP3K1	Phosphorylation	S506	1.427		_SHDFYSHELS(ph)SPVDSPSSLR_
MAP3K1	Phosphorylation	S507		1.436	_SHDFYSHELSS(ph)PVDSPSSLR_
MAP3K1	Phosphorylation	S923	0.127	-0.120	_LSAS(ph)SEDISER_
MED1	Phosphorylation	S664		3.368	_DNPAQDFSTLYGSS(ph)PLER_
MED1	Phosphorylation	S771	-1.422		_LSS(ph)SDSIGPDVTDILSDIAEEASKLPSTSDDCPAIGTPLR_
MED1	Phosphorylation	T1051	-1.201	-1.247	_SQT(ph)PPGVATPPIPK_
MED1	Phosphorylation	T1057		-1.294	_SQT(ph)PPGVAT(ph)PPIPK_
MED1	Phosphorylation	S1155	0.689		_NSSQSGGKPGS(ph)SPITK_
MED1	Phosphorylation	S1156	0.829	1.055	_NSSQSGGKPGSS(ph)PITK_
MED1	Phosphorylation	S1192		-0.792	_PSSLM(ox)NPSLSKPNIS(ph)PSHSRPPGGSDK_
MED1	Phosphorylation	S1223	1.061	1.013	_AKS(ph)PISSGSGGSHM(ox)SGTSSSSGM(ox)K_
MED1	Phosphorylation	S1433	-0.191		_NYGS(ph)PLISGSTPK_
PKNOX1	Phosphorylation	S41		-0.871	_TEQDPNCSEPDAEGVS(ph)PPPVESQTPMDVDK_
PKNOX1	Ubiquitylation	K140	0.699	0.969	_VNELCK(gl)DFCSR_
RAB3GAP1	Ubiquitylation	K922	-2.137	-1.184	_AAAMTPPEEELK(gl)R_
SHROOM2	Phosphorylation	S1337	-0.977	-0.027	_SLADILDPS(ph)VKIK_
SKI	Ubiquitylation	K294	-0.126	-0.054	_AYILLSQDYTGK(gl)EEQAR_
SKI	Ubiquitylation	K365	-0.244	-0.390	_TLAGSSNK(gl)SLGCVHPR_
SKI	Phosphorylation	S431		-0.475	_VVS(ph)SPPCAAAVSR_
SKI	Phosphorylation	S432	-0.742	-0.438	_VVSS(ph)PPCAAAVSR_
SKI	Phosphorylation	S480	-1.160	-1.491	_LTVDTPGAPETLAPVAAPEEDKDS(ph)EAEVEVESR_
TWSG1	Ubiquitylation	K192		1.435	_ISCESMGASK(gl)YR_