RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
NIPBL	2	-0.180	-0.270
NIPBL	2	-0.180	-0.270		1.066	1.181
NIPBL	2	-0.180	-0.270	0.759			0.809	0.590
HOXA13	1	-1.850	3.840		-0.027	0.427
HOXA13	1	-1.850	3.840	-1.413				0.651
MSX2	1	-0.260	0.240
HOXA11	0	-0.050	0.240
LRP6	0	0.210	0.050
MECOM	0	0.130	-0.120		-0.189	0.565		-1.171
MECOM	0	0.740	-0.750		-0.189	0.565		-1.171
TWIST1	0	-0.640	1.150
RUNX2	0
ALDH1A2	0	-1.010	0.740
TBX3	0	-0.160	0.160
CRABP2	0	-0.010	0.020					-5.005
KIAA1715	0	1.780	-1.030				-0.197	-0.120
MSX1	0	0.420	-0.450
CTNNB1	0	0.490	-0.230
CTNNB1	0	0.490	-0.230	-0.415			0.628	0.215
ZNF358	0	-0.260	1.180

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ALDH1A2	Ubiquitylation	K365		-1.744	_VVGSPFDPTTEQGPQIDK(gl)K_
ALDH1A2	Ubiquitylation	K366		-1.744	_VVGSPFDPTTEQGPQIDK(gl)K_
ALDH1A2	Ubiquitylation	K507		0.123	_EYSEVK(gl)TVTVK_
CRABP2	Ubiquitylation	K83	0.041		_VGEEFEEQTVDGRPCK(gl)SLVK_
CRABP2	Ubiquitylation	K87	0.081		_SLVK(gl)WESENK_
CRABP2	Ubiquitylation	K99	0.912		_MVCEQK(gl)LLK_
CRABP2	Ubiquitylation	K102	-0.793	-0.486	_LLK(gl)GEGPK_
CTNNB1	Ubiquitylation	K158		-1.265	_AIPELTK(gl)LLNDEDQVVVNK_
CTNNB1	Ubiquitylation	K180	-0.546	-0.636	_AAVM(ox)VHQLSK(gl)K_
CTNNB1	Ubiquitylation	K181	-0.717	-0.729	_AAVMVHQLSKK(gl)_
CTNNB1	Phosphorylation	S191	-0.024	0.129	_S(ph)PQMVSAIVR_
CTNNB1	Ubiquitylation	K435		-0.350	_NK(gl)MM(ox)VCQVGGIEALVR_
CTNNB1	Ubiquitylation	K496		-1.262	_LHYGLPVVVK(gl)_
CTNNB1	Phosphorylation	S552	1.233	1.224	_RTS(ph)MGGTQQQFVEGVR_
CTNNB1	Phosphorylation	T556	1.275	0.995	_RTSM(ox)GGT(ph)QQQFVEGVR_
CTNNB1	Ubiquitylation	K671	-0.941	-0.934	_MSEDKPQDYK(gl)K_
HOXA11	Ubiquitylation	K72		-0.905	_EYAIEPATK(gl)WHPR_
HOXA11	Phosphorylation	S84	0.313	0.946	_GNLAHCYS(ph)AEELVHR_
HOXA13	Ubiquitylation	K335	0.431	0.162	_VQLK(gl)ELER_
KIAA1715	Ubiquitylation	K113	-0.913	0.570	_NNEALDDLK(gl)SQR_
KIAA1715	Ubiquitylation	K130	0.026		_ILEEVMEKETYK(gl)TAK_
KIAA1715	Ubiquitylation	K133	-0.022		_TAK(gl)LILER_
KIAA1715	Phosphorylation	S177	-1.411	-2.603	_NLS(ph)PTPASPNQGPPPQVPVSPGPPK_
KIAA1715	Ubiquitylation	K355	-0.881		_LPEFSFEK(gl)R_
LRP6	Ubiquitylation	K1443		-0.221	_GK(gl)SMISSLSIMGGSSGPPYDR_
MECOM	Phosphorylation	S62	-1.041	-0.744	_EGS(ph)PYKAPIYIPDDIPIPAEFELR_
MECOM	Phosphorylation	S1039	-0.074	0.136	_NFIGNSNHGSQS(ph)PR_
MSX1	Phosphorylation	S154		0.148	_RLS(ph)PPACTLR_
MSX2	Phosphorylation	S3	-1.986	-1.774	_(ac)AS(ph)PSKGNDLFSPDEEGPAVVAGPGPGPGGAEGAAEER_
MSX2	Phosphorylation	S5	-1.986		_AS(ph)PS(ph)KGNDLFSPDEEGPAVVAGPGPGPGGAEGAAEER_
MSX2	Phosphorylation	S63		3.351	_EAS(ph)PLPAESASAGATLRPLLLSGHGAR_
MSX2	Phosphorylation	S91	-0.783	-0.727	_EAHS(ph)PGPLVKPFETASVK_
MSX2	Phosphorylation	S123		-0.062	_SENSEDGAAWMQEPGRYS(ph)PPPR_
NIPBL	Phosphorylation	S178	0.767	1.039	_NNTAAETEDDES(ph)DGEDRGGGTSGVR_
NIPBL	Phosphorylation	S280	0.496	0.816	_SPQPVCS(ph)PAGSEGTPK_
NIPBL	Phosphorylation	S284	0.172	0.245	_SPQPVCSPAGS(ph)EGTPK_
NIPBL	Phosphorylation	S305	0.703		_GSRPPLILQSQSLPCS(ph)SPR_
NIPBL	Phosphorylation	S306	0.689	0.413	_GSRPPLILQSQSLPCSS(ph)PR_
NIPBL	Phosphorylation	S318	-0.415	-0.625	_DVPPDILLDS(ph)PERK_
NIPBL	Phosphorylation	S349	0.713	0.649	_AAMYDIIS(ph)SPSKDSTK_
NIPBL	Phosphorylation	S350	0.226	0.375	_AAMYDIISS(ph)PSK_
NIPBL	Phosphorylation	S553	2.102	1.878	_VDS(ph)QASITQDSDSIK_
NIPBL	Phosphorylation	T599	0.308		_STPENHPET(ph)PKKK_
NIPBL	Phosphorylation	T713	-0.940	-0.779	_GESRPET(ph)PKQK_
NIPBL	Ubiquitylation	K1628	0.366		_DAVTSK(gl)MDQGSIER_
NIPBL	Phosphorylation	S2658	0.412	0.260	_AITSLLGGGS(ph)PK_
NIPBL	Phosphorylation	S2672	0.868		_NNTAAETEDDES(ph)DGEDRGGGTSGSLR_
RUNX2	Phosphorylation	S96	0.504	-0.399	_RFS(ph)PPSSSLQPGK_
RUNX2	Ubiquitylation	K244	0.258		_NASAVMK(gl)NQVAR_
TBX3	Ubiquitylation	K466	-2.519		_EGTAPAK(gl)VEEAR_
TWIST1	Ubiquitylation	K150		-0.176	_IQTLK(gl)LAAR_
ZNF358	Phosphorylation	S146	-1.729		_VDPISSGLTATPQVLATSPAVLPAPAS(ph)PPRPFSCPDCGR_
ZNF358	Phosphorylation	S152		-0.863	_VDPISSGLTATPQVLATSPAVLPAPASPPRPFS(ph)CPDCGR_