RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
ERCC2	2	-0.590	1.060	-0.491		1.066
CHD8	1	-1.310	2.760	-0.896	0.435	0.478	-1.819	-1.191
CHD8	1	-1.310	2.760	-1.168			0.026	0.297
BRIP1	1	0.650	-0.340
SKIV2L	1	-1.520	3.780				-0.001	-0.057
DDX11	0	-0.980	0.900
SKIV2L2	0	-0.700	0.990
SKIV2L2	0	-0.700	0.990	-0.408	-1.067	-0.153	-0.849	-0.141
XRCC5	0	1.940	-0.800	0.205	-0.587	0.234	-0.176	0.162
SMARCA2	0	-0.270	0.240	-0.431	-0.133	0.253	0.069	-0.280
IFIH1	0	1.630	-0.790
SMARCA4	0	-0.810	1.520	0.629	-0.158	0.141	0.337	0.333
INO80	0	1.190	-1.020				0.414	0.682
SUPV3L1	0	1.500	-0.040	0.342	0.274	0.234	0.059	0.110
CHD7	0	0.220	-0.050	-1.168			0.026	0.297
CHD9	0	-0.540	1.270				-0.628	-0.221
CHD9	0	-0.540	1.270

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
BRIP1	Phosphorylation	S112	0.807	1.459	_HFNYPS(ph)TPPSER_
BRIP1	Phosphorylation	T113	1.675		_HFNYPST(ph)PPSER_
BRIP1	Phosphorylation	S206		-0.381	_INSFS(ph)PQKPPGHCSR_
BRIP1	Ubiquitylation	K764		-0.462	_GK(gl)VSEGLDFSDDNAR_
BRIP1	Ubiquitylation	K797	-0.723	0.188	_DLQVELK(gl)R_
BRIP1	Phosphorylation	S1032	-0.789	-0.532	_ATPELGSSENSASS(ph)PPR_
BRIP1	Phosphorylation	S1237	0.424	0.355	_NFKPS(ph)PSK_
CHD7	Phosphorylation	S557		-0.452	_VPVHQHS(ph)PSEPFLEKPVPDM(ox)TQVSGPNAQLVK_
CHD7	Phosphorylation	S1874	-0.088	-0.155	_TPFKDEIDEFANS(ph)PSEDKEESMEIHATGK_
CHD7	Phosphorylation	S2533		-0.792	_RTS(ph)LSAEDAEVTK_
CHD7	Phosphorylation	S2559	-0.345	-0.513	_NIPS(ph)PGQLDPDTR_
CHD7	Phosphorylation	S2956	0.383	-0.248	_DGETLEGS(ph)DAEESLDK_
CHD8	Phosphorylation	S557		-0.452	_VPVHQHS(ph)PSEPFLEKPVPDM(ox)TQVSGPNAQLVK_
CHD8	Ubiquitylation	K1766	0.498		_EQMK(gl)IEAAER_
CHD8	Phosphorylation	S1874	-0.088	-0.155	_TPFKDEIDEFANS(ph)PSEDKEESMEIHATGK_
CHD8	Phosphorylation	S1978	0.606	0.061	_M(ox)NYM(ox)QNHQAGAPAPSLS(ph)R_
CHD8	Phosphorylation	T1993	-1.383	-1.407	_T(ph)ASPLPLRPDAPVEKS(ph)PEETATQVPSLESLTLK_
CHD8	Phosphorylation	S1995	-0.690	-1.351	_TAS(ph)PLPLRPDAPVEK_
CHD8	Phosphorylation	S2008	-1.339	-1.407	_T(ph)ASPLPLRPDAPVEKS(ph)PEETATQVPSLESLTLK_
CHD8	Phosphorylation	S2046	0.427	0.449	_VS(ph)PSDTTPLVSR_
CHD8	Phosphorylation	S2519	-0.083	-0.552	_APGYPSS(ph)PVTTASGTTLR_
CHD8	Phosphorylation	S2533		-0.792	_RTS(ph)LSAEDAEVTK_
CHD8	Phosphorylation	S2559	-0.345	-0.513	_NIPS(ph)PGQLDPDTR_
CHD8	Phosphorylation	S2956	0.383	-0.248	_DGETLEGS(ph)DAEESLDK_
CHD9	Phosphorylation	S550		-0.232	_VMS(ph)PENFPTASVEGK_
DDX11	Ubiquitylation	K173	0.779	-0.864	_VQLK(gl)YAAK_
DDX11	Ubiquitylation	K520		-0.747	_YCEK(gl)SMISR_
DDX11	Ubiquitylation	K830		-1.499	_SAELQEK(gl)MAYLDQTLPR_
ERCC2	Ubiquitylation	K268	5.973	1.957	_CQGNLETLQK(gl)TVLR_
ERCC2	Ubiquitylation	K507		-2.034	_GNDQVAISSK(gl)FETR_
IFIH1	Phosphorylation	S301		-1.067	_AS(ph)PEPELQLRPYQMEVAQPALEGK_
SKIV2L	Phosphorylation	S245	-0.192	0.456	_GDTVSAS(ph)PCSAPLAR_
SKIV2L	Phosphorylation	S255	0.352	0.534	_AS(ph)SLEDLVLK_
SKIV2L	Phosphorylation	S256	0.435	0.585	_ASS(ph)LEDLVLK_
SKIV2L	Ubiquitylation	K369		-0.901	_ALSNQK(gl)FR_
SKIV2L	Ubiquitylation	K526		-0.595	_GYYAAVEAKK(gl)_
SKIV2L	Ubiquitylation	K720		-0.315	_GLDPTGTVILLCK(gl)GR_
SKIV2L	Ubiquitylation	K791	0.355	-0.629	_AHEQALAELTK(gl)R_
SKIV2L	Ubiquitylation	K1075		-0.404	_TLGYVDEAGTVK(gl)LAGR_
SKIV2L2	Ubiquitylation	K192		0.854	_VIFTSPIK(gl)ALSNQK_
SKIV2L2	Ubiquitylation	K198		0.245	_ALSNQK(gl)YR_
SKIV2L2	Ubiquitylation	K768	1.102	-0.687	_SIQEVQK(gl)R_
SKIV2L2	Ubiquitylation	K796	-0.319		_VIQK(gl)VEAFEHR_
SKIV2L2	Ubiquitylation	K852		0.044	_TVLQMDELK(gl)CR_
SKIV2L2	Ubiquitylation	K873		0.279	_LGFATSSDVIEMK(gl)GR_
SMARCA2	Phosphorylation	S329	-0.314	-0.351	_IS(ph)PIQKPQGLDPVEILQER_
SMARCA2	Ubiquitylation	K333	-1.365		_ISPIQK(gl)PQGLDPVEILQER_
SMARCA2	Ubiquitylation	K381	0.558	1.360	_ATVELK(gl)ALR_
SMARCA2	Ubiquitylation	K413	-0.238		_DTTLETALNSK(gl)AYKR_
SMARCA2	Phosphorylation	S1377	-0.887	-1.142	_GRPPAEKLS(ph)PNPPK_
SMARCA4	Ubiquitylation	K357	-0.934		_ITPIQK(gl)PR_
SMARCA4	Ubiquitylation	K405	0.109	1.148	_ATIELK(gl)ALR_
SMARCA4	Ubiquitylation	K437	-0.317		_DTALETALNAK(gl)AYKR_
SMARCA4	Ubiquitylation	K455	0.225		_ITEK(gl)LEK_
SMARCA4	Ubiquitylation	K496		0.923	_SVTGK(gl)IQK_
SMARCA4	Phosphorylation	S677	-0.880	-0.324	_KAENAEGQTPAIGPDGEPLDETSQMS(ph)DLPVK_
SMARCA4	Ubiquitylation	K1283	0.125		_ILAAAK(gl)YK_
SMARCA4	Phosphorylation	S1413	-0.265	0.515	_EVDYSDS(ph)LTEK_
SMARCA4	Phosphorylation	S1486	-0.713	-0.935	_LS(ph)PNPPNLTK_
SUPV3L1	Phosphorylation	S725	-0.599	-0.964	_ATEPPS(ph)PDAGELSLASR_
XRCC5	Ubiquitylation	K195	-0.495	-0.075	_LGGHGPSFPLK(gl)GITEQQK_
XRCC5	Ubiquitylation	K265	-0.577	0.489	_IAAYK(gl)SILQER_
XRCC5	Ubiquitylation	K282	0.763		_TWTVVDAK(gl)TLKK_
XRCC5	Ubiquitylation	K325	0.022	-0.122	_YGSDIVPFSK(gl)VDEEQMK_
XRCC5	Ubiquitylation	K332	-0.032	0.491	_VDEEQMK(gl)YK_
XRCC5	Ubiquitylation	K347	0.588	1.044	_CFSVLGFCK(gl)SSQVQR_
XRCC5	Ubiquitylation	K481	-1.648	0.087	_TDTLEDLFPTTK(gl)IPNPR_
XRCC5	Ubiquitylation	K532	0.343	-0.001	_SQIPLSK(gl)IK_
XRCC5	Ubiquitylation	K534	-0.146	0.207	_SQIPLSKIK(gl)_
XRCC5	Ubiquitylation	K543	0.666	0.157	_TLFPLIEAK(gl)KK_
XRCC5	Ubiquitylation	K544	0.165	0.157	_TLFPLIEAKK(gl)_
XRCC5	Ubiquitylation	K660	0.644	1.285	_FNNFLK(gl)ALQEK_
XRCC5	Ubiquitylation	K665	0.630	0.990	_ALQEK(gl)VEIK_
XRCC5	Ubiquitylation	K702	0.626	0.332	_EEASGSSVTAEEAK(gl)K_
XRCC5	Ubiquitylation	K703	0.743	0.332	_EEASGSSVTAEEAKK(gl)_