RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
ATP6V1H	2	-1.810	2.860				0.325
ATP6V1H	2	-1.810	2.860	-0.409
SEC61A1	2	1.170	-1.120				0.304	0.263
SEC61A2	2	1.160	-0.920				0.304	0.263
TJP1	2	-0.410	1.150
TJP1	2	-0.410	1.150				-0.039	-0.011
TJP1	2	-0.410	1.150
SLC12A2	1	-0.590	1.190				-0.386	-0.263
SEC61B	1	-0.680	0.150	-3.497			-1.265	-1.434
PLCG1	1	-0.170	0.000
SEC61G	1	4.180	-1.320				0.027	0.697
ADCY3	1	-0.850	1.180
ATP6V1B2	1	-1.700	3.610				-0.526	0.143
PDIA4	1	-0.040	-0.150	0.422			0.500	0.333
ATP6V0D1	1	-0.960	0.640
ATP6V0D1	1	-0.960	0.640	-0.252			-0.493	2.836
ATP6V0A1	0	-0.580	0.460				-0.439	0.009
PRKACA	0	0.380	-0.680		-1.005	-0.697	0.234	0.487
GNAS	0	0.840	-0.750
GNAS	0	0.840	-0.750
GNAS	0	0.840	-0.750	-0.166	-0.094	0.032	0.420	0.504
ATP6V1D	0	1.770	-0.910				0.833	0.523
KDELR1	0	1.060	-0.420				0.819	0.705
ATP6V1A	0	-0.790	0.280	0.981			0.151	0.014
ATP6V1B1	0	1.440	-1.080				-0.526	0.143
TJP2	0	0.160	0.070				-1.237	-1.460
TJP2	0	0.160	0.070	0.144			0.035	0.024
ATP6V1E1	0	-0.180	0.310				-0.346	-2.246
KDELR2	0	0.690	-0.960				0.819	0.705
ATP6V1G1	0	0.090	-0.400
ATP6V1G1	0	0.090	-0.400
ATP6V1G2	0	-0.040	0.160
ATP6V1G2	0	-0.040	0.160
ATP6V1G2-D	0
ATP6V1G2-D	0
PRKACB	0	1.740	-1.200		-1.064
PRKACB	0	1.740	-1.200		-1.005	-0.697	0.234	0.487
ARF1	0	0.020	0.040		0.702	-1.163
PRKCA	0	0.750	-0.690				0.349	0.585
PRKCA	0	0.750	-0.690
ATP6V1C1	0
ADCY9	0	-0.910	0.930
PRKCB	0	0.260	-0.530
PRKCB	0	0.260	-0.530				0.349	0.585
ATP6V0A2	0	1.190	-0.740				0.137	-0.457
ERO1L	0	-0.250	-0.050				1.365	-0.072
ATP6V1E2	0	-0.020	-0.010

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ADCY3	Ubiquitylation	K406	-0.885		_TK(gl)TGVDMR_
ADCY3	Ubiquitylation	K628		0.051	_YSVEK(gl)EK_
ADCY3	Ubiquitylation	K879	0.818	2.820	_IEVHDQK(gl)ER_
ADCY3	Ubiquitylation	K1047		-1.036	_IGMNK(gl)GGVLAGVIGAR_
ADCY9	Ubiquitylation	K35	0.400		_INPK(gl)QLSSNSHPK_
ADCY9	Ubiquitylation	K564	0.874	0.253	_LGQSVVADQLK(gl)GLK_
ADCY9	Ubiquitylation	K622	0.176	0.287	_GQGTASSGNVSDLAQTVK(gl)TFDNLK_
ADCY9	Ubiquitylation	K628	0.266		_TFDNLK(gl)TCPSCGITFAPK_
ADCY9	Ubiquitylation	K699		1.085	_LTNSQTSLCEILQEK(gl)GR_
ADCY9	Ubiquitylation	K1218	1.351	1.067	_VLSK(gl)MGYDFDYR_
ATP6V0A1	Ubiquitylation	K119		0.578	_EINTNQEALK(gl)R_
ATP6V0A1	Ubiquitylation	K235		0.326	_K(gl)ICEGFR_
ATP6V0A1	Ubiquitylation	K255	0.143		_K(gl)EMASGVNTR_
ATP6V0A1	Ubiquitylation	K366		-0.441	_MQTNQTPPTYNK(gl)TNK_
ATP6V0A1	Ubiquitylation	K369	-1.113	-0.322	_MQTNQTPPTYNKTNK(gl)_
ATP6V0A2	Ubiquitylation	K136	0.287		_VTK(gl)TFVKR_
ATP6V0A2	Ubiquitylation	K290	0.039	-0.079	_QVLCK(gl)AAESVYSR_
ATP6V0A2	Phosphorylation	S695	0.705	0.859	_KDS(ph)EEEVSLLGSQDIEEGNHQVEDGCR_
ATP6V0D1	Ubiquitylation	K384	0.065	-0.172	_AK(gl)IDNYIPIF_
ATP6V1A	Ubiquitylation	K5	-0.075	-0.921	_(ac)MDFSK(gl)LPK_
ATP6V1A	Ubiquitylation	K132		0.567	_DIK(gl)WDFTPCK_
ATP6V1A	Ubiquitylation	K139	-1.426	-0.412	_WDFTPCK(gl)NLR_
ATP6V1A	Ubiquitylation	K393		-0.894	_VK(gl)CLGNPER_
ATP6V1A	Ubiquitylation	K516		-0.571	_LIK(gl)DDFLQQNGYTPYDR_
ATP6V1C1	Ubiquitylation	K28	-0.393		_LHAATSK(gl)NNNLAVTSK_
ATP6V1E1	Ubiquitylation	K10	0.069	-0.101	_(ac)ALSDADVQK(gl)QIK_
ATP6V1E1	Ubiquitylation	K145	-2.187	-0.725	_KQDFPLVK(gl)AAVQK_
ATP6V1E1	Ubiquitylation	K150		-0.749	_AAVQK(gl)AIPMYK_
ATP6V1E1	Ubiquitylation	K156		-1.382	_AIPMYK(gl)IATK_
ATP6V1E2	Ubiquitylation	K10	0.468		_ALSDVDVKK(gl)_
ATP6V1G1	Phosphorylation	S3		1.440	_(ac)AS(ph)QSQGIQQLLQAEK_
ATP6V1G1	Ubiquitylation	K16	0.071		_(ac)ASQSQGIQQLLQAEK(gl)R_
ATP6V1G2	Phosphorylation	S3		1.440	_(ac)AS(ph)QSQGIQQLLQAEK_
ATP6V1G2	Ubiquitylation	K16	0.071		_(ac)ASQSQGIQQLLQAEK(gl)R_
ATP6V1G2-DDX39B	Phosphorylation	S3		1.440	_(ac)AS(ph)QSQGIQQLLQAEK_
ATP6V1G2-DDX39B	Ubiquitylation	K16	0.071		_(ac)ASQSQGIQQLLQAEK(gl)R_
ATP6V1H	Ubiquitylation	K176	1.541	0.958	_TQLSSQK(gl)LR_
GNAS	Ubiquitylation	K8	0.430	0.328	_GCLGNSK(gl)TEDQRNEEK(gl)AQR_
GNAS	Ubiquitylation	K17	-0.011		_GCLGNSK(gl)TEDQRNEEK(gl)AQR_
GNAS	Ubiquitylation	K32	0.249	-0.446	_QLQK(gl)DKQVYR_
GNAS	Ubiquitylation	K58	-1.182	0.161	_STIVK(gl)QM(ox)R_
GNAS	Ubiquitylation	K92	-1.333	-0.290	_ATK(gl)VQDIKNNLK_
GNAS	Ubiquitylation	K97		0.076	_VQDIK(gl)NNLK_
GNAS	Ubiquitylation	K167	-1.721		_LHALK(gl)LR_
GNAS	Ubiquitylation	K301	-0.955	-0.198	_QDLLAEK(gl)VLAGK_
GNAS	Ubiquitylation	K308		-0.472	_SK(gl)IEDYFPEFAR_
PDIA4	Ubiquitylation	K141		2.398	_FDVSGYPTIK(gl)ILK_
PDIA4	Ubiquitylation	K163		0.009	_TQEEIVAK(gl)VR_
PDIA4	Ubiquitylation	K245	0.936	1.890	_VDATAETDLAK(gl)R_
PLCG1	Ubiquitylation	K300		8.031	_DLK(gl)NMLSQVNYR_
PLCG1	Ubiquitylation	K348		-0.219	_SLMYSAQK(gl)TMDLPFLEASTLR_
PLCG1	Ubiquitylation	K552		-0.355	_NMAQYFK(gl)K_
PLCG1	Ubiquitylation	K553		-0.355	_NMAQYFK(gl)K_
PLCG1	Ubiquitylation	K1063	0.864	0.355	_LTEGK(gl)IMER_
PLCG1	Phosphorylation	S1370	0.475	0.515	_AREGS(ph)FESR_
PRKACA	Ubiquitylation	K30	-0.143		_AKEDFLKK(gl)_
PRKACA	Ubiquitylation	K93	0.839	0.714	_QIEHTLNEK(gl)R_
PRKACB	Ubiquitylation	K30	-0.143		_AKEDFLKK(gl)_
PRKACB	Ubiquitylation	K93	0.839	0.714	_QIEHTLNEK(gl)R_
PRKACB	Phosphorylation	T243		-0.835	_T(ph)WTLCGTPEYLAPEIILSK_
PRKACB	Phosphorylation	T245	-0.116	-0.102	_TWT(ph)LCGTPEYLAPEIILSK_
PRKCA	Phosphorylation	S10	-0.650	0.036	_(ac)ADVFPGNDS(ph)TASQDVANR_
PRKCA	Phosphorylation	S13	-1.038	0.335	_(ac)ADVFPGNDSTAS(ph)QDVANR_
PRKCA	Phosphorylation	S226	0.693	0.415	_STLNPQWNES(ph)FTFK_
PRKCA	Ubiquitylation	K316	-0.522	-0.535	_LGPAGNK(gl)VISPSEDR_
PRKCB	Phosphorylation	S10	-0.650	0.036	_(ac)ADVFPGNDS(ph)TASQDVANR_
PRKCB	Phosphorylation	S13	-1.038	0.335	_(ac)ADVFPGNDSTAS(ph)QDVANR_
PRKCB	Phosphorylation	S226	0.693	0.415	_STLNPQWNES(ph)FTFK_
PRKCB	Ubiquitylation	K315	0.213	0.518	_ISQGTK(gl)VPEEK_
SEC61A1	Ubiquitylation	K113		-0.118	_IIEVGDTPK(gl)DR_
SEC61A1	Ubiquitylation	K394		1.586	_TWIEVSGSSAK(gl)DVAK_
SEC61A1	Ubiquitylation	K398		0.253	_DVAK(gl)QLK_
SEC61A1	Ubiquitylation	K401	-1.030	0.553	_QLK(gl)EQQMVMR_
SEC61A1	Phosphorylation	S414		0.827	_ETS(ph)MVHELNR_
SEC61A2	Ubiquitylation	K113		-0.118	_IIEVGDTPK(gl)DR_
SEC61A2	Ubiquitylation	K394		1.586	_TWIEVSGSSAK(gl)DVAK_
SEC61A2	Ubiquitylation	K398		0.253	_DVAK(gl)QLK_
SEC61A2	Ubiquitylation	K401	-1.030	0.553	_QLK(gl)EQQMVMR_
SEC61A2	Phosphorylation	S414		0.827	_ETS(ph)MVHELNR_
SEC61B	Phosphorylation	S7	-0.660		_PGPTPS(ph)GTNVGSSGRSPSK_
SEC61B	Phosphorylation	T9		-0.867	_PGPTPSGT(ph)NVGSSGRSPSK_
SEC61B	Phosphorylation	S13	-0.477	-0.986	_PGPTPSGTNVGS(ph)SGRSPSK_
SEC61B	Phosphorylation	S14	-0.692	-0.695	_PGPTPSGTNVGSS(ph)GRSPSK_
SEC61B	Phosphorylation	S17	-0.477	-0.605	_PGPTPSGTNVGSSGRS(ph)PSK_
SEC61B	Phosphorylation	S49	1.434	2.261	_TTS(ph)AGTGGMWR_
SEC61G	Ubiquitylation	K16	-1.881	-0.329	_QFVK(gl)DSIR_
SLC12A2	Phosphorylation	S79		-0.757	_DGGGVRDEGPAAAGDGLGRPLGPTPSQS(ph)R_
SLC12A2	Ubiquitylation	K136	-0.018		_QTPADGEASGESEPAKGSEEAK(gl)GR_
SLC12A2	Ubiquitylation	K280	-0.876	0.485	_DAVVTYTAESK(gl)GVVK_
SLC12A2	Ubiquitylation	K284	-0.876		_DAVVTYTAESK(gl)GVVK_
SLC12A2	Ubiquitylation	K833	0.031	0.510	_QAMK(gl)EMSIDQAK_
SLC12A2	Ubiquitylation	K841	-0.060	0.706	_EMSIDQAK(gl)YQR_
SLC12A2	Phosphorylation	S944		0.525	_LKEGLDISHLQGQEELLSSQEKS(ph)PGTK_
SLC12A2	Ubiquitylation	K948	1.471	0.675	_SPGTK(gl)DVVVSVEYSK_
SLC12A2	Ubiquitylation	K958	1.077	1.080	_DVVVSVEYSK(gl)K_
SLC12A2	Ubiquitylation	K959	1.579	1.080	_DVVVSVEYSKK(gl)_
SLC12A2	Ubiquitylation	K966	1.102		_KSDLDTSK(gl)PLSEKPITHK_
SLC12A2	Ubiquitylation	K971	1.154	-0.324	_KSDLDTSKPLSEK(gl)PITHK_
SLC12A2	Ubiquitylation	K983	0.798		_VEEEDGK(gl)TATQPLLKK_
SLC12A2	Ubiquitylation	K991	1.299	0.502	_TATQPLLK(gl)K_
SLC12A2	Ubiquitylation	K992	1.045		_K(gl)ESKGPIVPLNVADQK_
SLC12A2	Phosphorylation	S994	0.106	-0.409	_KES(ph)KGPIVPLNVADQK_
SLC12A2	Ubiquitylation	K995	1.109	0.084	_ESK(gl)GPIVPLNVADQK_
SLC12A2	Ubiquitylation	K1018	0.796		_LLEASTQFQKK(gl)_
TJP1	Ubiquitylation	K54	0.081	-0.398	_GSLLPLK(gl)R_
TJP1	Ubiquitylation	K157	0.023	-0.755	_SEK(gl)IWPR_
TJP1	Phosphorylation	S175	0.113	-0.041	_S(ph)VASSQPAKPTK_
TJP1	Ubiquitylation	K187	-0.394		_SVASSQPAK(gl)PTK_
TJP1	Ubiquitylation	K198	0.760	0.143	_SRK(gl)NEEYGLR_
TJP1	Phosphorylation	S329	-0.569	-0.354	_HS(ph)PQQPSNGSLR_
TJP1	Phosphorylation	S353	-0.522	-0.375	_ISKPGAVS(ph)TPVK_
TJP1	Phosphorylation	S617	0.438	0.543	_S(ph)REDLSAQPVQTK_
TJP1	Ubiquitylation	K677	-0.484		_EEPDIYQIAK(gl)SEPR_
TJP1	Phosphorylation	S912		-0.113	_IDS(ph)PGFKPASQQK_
TJP1	Phosphorylation	S916	-0.049	0.102	_IDS(ph)PGFKPASQQVYR_
TJP1	Ubiquitylation	K920	7.379	6.153	_IDSPGFK(gl)PASQQVYR_
TJP1	Phosphorylation	S968	-0.778		_LEEPTPAPSTSYS(ph)PQADSLR_
TJP1	Phosphorylation	S1579	0.045	-0.197	_SHS(ph)LAQPPEFDSGVETFSIHAEKPK_
TJP1	Phosphorylation	S1617	0.665		_AIPVS(ph)PSAVEEDEDEDGHTVVATAR_
TJP2	Phosphorylation	S161	-0.169	-0.024	_VQVAALQAS(ph)PPLDQDDR_
TJP2	Phosphorylation	S205	0.118	0.563	_SWEDS(ph)PER_
TJP2	Phosphorylation	S275	0.891	0.690	_GRS(ph)IDQDYER_
TJP2	Phosphorylation	S297	0.478	0.579	_AYS(ph)PEYR_
TJP2	Phosphorylation	S446		0.631	_SFS(ph)PEER_
TJP2	Phosphorylation	S471	-0.863	0.159	_ERPS(ph)SREDTPSR_
TJP2	Phosphorylation	S472	-0.715	0.193	_ERPSS(ph)REDTPSR_
TJP2	Ubiquitylation	K506	-0.355	-0.981	_STGDIAGTVVPETNK(gl)EPR_
TJP2	Ubiquitylation	K520	-1.549		_YQEEPPAPQPK(gl)AAPR_
TJP2	Ubiquitylation	K800	-0.173	0.403	_DAGSEK(gl)STGVVR_
TJP2	Phosphorylation	S992	-0.733		_SSEPVQHEES(ph)IRKPSPEPR_
TJP2	Phosphorylation	S997	-1.075	-0.616	_SSEPVQHEESIRKPS(ph)PEPR_
TJP2	Phosphorylation	S1017	-1.379	-1.918	_DNS(ph)PPPAFKPEPPK_
TJP2	Ubiquitylation	K1047	-0.374	-0.833	_SYEYK(gl)SNPSAVAGNETPGASTK_
TJP2	Phosphorylation	S1187		0.856	_GS(ph)YGSDAEEEEYRQQLSEHSK_
TJP2	Phosphorylation	S1190	0.754	0.727	_GSYGS(ph)DAEEEEYRQQLSEHSK_