RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
MYO3A	2	-1.560	3.110
CHEK1	2	-1.170	1.560
CHEK1	2	-1.170	1.560
CAD	1	1.760	-0.990	-0.363			-0.027	0.051
CLK1	0	-0.740	1.390				0.612	0.032
HIPK2	0	-0.990	0.680
MAP2	0	0.430	-0.730
TGFBR1	0	-0.260	0.020
ACVR1B	0	-0.720	1.030
PDPK1	0	0.050	-0.440
CAMK2D	0	-0.260	0.500		-0.654	0.073
CAMK2D	0	-0.260	0.500	-0.619			0.544	0.125
CAMK2D	0	-0.260	0.500
TAF1	0						0.381	0.385
DYRK1A	0	-1.360	2.390
PRKCD	0	0.250	0.070				0.578	0.427
CDK5	0	-1.100	1.740	-0.236			1.063	0.312
BCL2	0	0.910	-0.740
ADRBK1	0	-0.390	0.360
ADRBK1	0	-0.340	0.480
TNKS	0	0.420	0.660
LRRK2	0	0.530	-0.620	-0.240
MTOR	0	-0.680	0.150	0.757			0.074	0.101

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ACVR1B	Ubiquitylation	K215		0.000	_TIVLQEIIGK(gl)GR_
ADRBK1	Phosphorylation	S670	1.038	0.924	_NKPRS(ph)PVVELSK_
ADRBK1	Phosphorylation	S676		1.113	_NKPRSPVVELS(ph)K_
BCL2	Ubiquitylation	K22	1.480		_YIHYK(gl)LSQR_
CAD	Ubiquitylation	K739	-0.732	-0.798	_NSVTGGTAAFEPSVDYCVVK(gl)IPR_
CAD	Ubiquitylation	K760		0.489	_IGSCMK(gl)SVGEVMGIGR_
CAD	Ubiquitylation	K778		-0.005	_SFEEAFQK(gl)ALR_
CAD	Ubiquitylation	K1119		-1.239	_FLSSAAAVSK(gl)EHPVVISK_
CAD	Ubiquitylation	K1211	-0.235	-0.502	_DDQLK(gl)VIECNVR_
CAD	Ubiquitylation	K1309	0.012	-0.277	_AMLSTGFK(gl)IPK_
CAD	Ubiquitylation	K1325	-0.719	-0.613	_NK(gl)SELLPTVR_
CAD	Phosphorylation	S1406	0.530	0.612	_RLS(ph)SFVTK_
CAD	Ubiquitylation	K1411	-0.215	-0.224	_RLSSFVTK(gl)GYR_
CAD	Ubiquitylation	K1460	0.321		_VHVDCMTSQK(gl)LVR_
CAD	Ubiquitylation	K1657	2.804	-1.545	_LGPGK(gl)GEVRPELGSR_
CAD	Phosphorylation	T1827		-1.407	_WPQGAVPQLPPSAPAT(ph)SEMTTTPERPR_
CAD	Phosphorylation	S1859	-0.178	-0.084	_IHRAS(ph)DPGLPAEEPKEK_
CAMK2D	Ubiquitylation	K251	-0.437		_DLINK(gl)MLTINPAK_
CAMK2D	Phosphorylation	S330	0.412	0.370	_KPDGVKES(ph)TESSNTTIEDEDVK_
CAMK2D	Phosphorylation	T331		-0.174	_KPDGVKES(ph)TESSNTTIEDEDVK_
CAMK2D	Phosphorylation	T336	0.615	0.376	_ESTESSNT(ph)TIEDEDVK_
CAMK2D	Phosphorylation	T337	0.450		_ESTESSNTT(ph)IEDEDVK_
CDK5	Ubiquitylation	K56	0.606	0.237	_EICLLK(gl)ELK_
CHEK1	Ubiquitylation	K53	0.879		_AVDCPENIK(gl)K_
CHEK1	Ubiquitylation	K54	0.738		_AVDCPENIKK(gl)_
CHEK1	Phosphorylation	S296	-0.098	0.184	_VTS(ph)GGVSESPSGFSK_
CHEK1	Phosphorylation	S300		1.091	_VTSGGVS(ph)ESPSGFSK_
CHEK1	Phosphorylation	S302	1.750		_VTSGGVSES(ph)PSGFSK_
CHEK1	Phosphorylation	S317		1.903	_HIQSNLDFS(ph)PVNSASSEENVK_
CHEK1	Ubiquitylation	K399	-0.582		_ETCEK(gl)LGYQWK_
DYRK1A	Ubiquitylation	K11	-0.236		_(ac)MHTGGETSACK(gl)PSSVR_
DYRK1A	Phosphorylation	Y321	0.876	0.924	_IYQY(ph)IQSR_
HIPK2	Ubiquitylation	K492		-0.060	_YISQTQGLPAEYLLSAGTK(gl)TTR_
HIPK2	Ubiquitylation	K614		-0.350	_SCFQNMEICK(gl)R_
MAP2	Phosphorylation	S1534		0.156	_VSDGVTKS(ph)PEKR_
MAP2	Phosphorylation	S1782	0.116	0.529	_VDHGAEIITQS(ph)PGR_
MTOR	Ubiquitylation	K309	-0.762	0.065	_DLMGFGTK(gl)PR_
MTOR	Ubiquitylation	K1257	-1.167	-0.901	_SGQGDALASGPVETGPMKK(gl)_
MTOR	Ubiquitylation	K1395		-1.255	_AYAK(gl)ALHYK_
MTOR	Ubiquitylation	K2066		-1.004	_GPQTLK(gl)ETSFNQAYGR_
MTOR	Ubiquitylation	K2166		-1.304	_IQSIAPSLQVITSK(gl)QRPR_
MTOR	Phosphorylation	T2471		0.329	_KT(ph)GTTVPESIHSFIGDGLVKPEALNK_
MYO3A	Ubiquitylation	K399	2.702		_LYIGSK(gl)R_
PDPK1	Phosphorylation	S241	0.358	0.361	_ANS(ph)FVGTAQYVSPELLTEK_
PDPK1	Ubiquitylation	K257	0.571	-0.234	_ANSFVGTAQYVSPELLTEK(gl)SACK_
PRKCD	Ubiquitylation	K138	-0.141		_SEDEAK(gl)FPTMNR_
PRKCD	Ubiquitylation	K222	0.185	0.658	_DTIFQK(gl)ER_
PRKCD	Phosphorylation	S302	-0.240	-0.222	_S(ph)DSASSEPVGIYQGFEK_
PRKCD	Phosphorylation	S304	0.378	0.289	_RSDS(ph)ASSEPVGIYQGFEK_
PRKCD	Phosphorylation	S506	-0.213	0.200	_AS(ph)TFCGTPDYIAPEILQGLK_
PRKCD	Phosphorylation	T507	-0.149	0.240	_AS(ph)TFCGTPDYIAPEILQGLK_
PRKCD	Ubiquitylation	K641	-2.000		_DYSNFDQEFLNEK(gl)AR_
PRKCD	Phosphorylation	S645	0.577	0.832	_ARLS(ph)YSDK_
PRKCD	Phosphorylation	S647	0.886	0.853	_ARLSYS(ph)DK_
TAF1	Phosphorylation	S547		-1.176	_LLEPPVLTLDPNDENLILEIPDEKEEATSNSPS(ph)K_
TAF1	Phosphorylation	S550		-1.343	_LLEPPVLTLDPNDENLILEIPDEKEEATSNSPSKES(ph)K_
TAF1	Phosphorylation	S1176	0.662	1.114	_DDDTASVTS(ph)LNSSATGR_
TAF1	Phosphorylation	T1703	0.001	-0.298	_DASVFQDESNM(ox)SVLDIPSAT(ph)PEK_
TGFBR1	Ubiquitylation	K449	-0.991		_VVCEQK(gl)LRPNIPNR_
TGFBR1	Ubiquitylation	K502	0.553	0.430	_TLSQLSQQEGIK(gl)M_
TNKS	Ubiquitylation	K667	-0.766	-0.164	_AGDLETVK(gl)QLCSSQNVNCR_
TNKS	Ubiquitylation	K762		-1.426	_GK(gl)YEICK_
TNKS	Ubiquitylation	K771		-1.280	_LLLK(gl)HGADPTKK_
TNKS	Ubiquitylation	K812	-0.176	-1.693	_GDAALLDAAK(gl)K_
TNKS	Ubiquitylation	K813	-0.176	-1.693	_GDAALLDAAK(gl)K_
TNKS	Ubiquitylation	K1081		-0.151	_LIK(gl)GVER_