RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
RAB7A	1	1.540	-0.590	0.299	1.971	-0.775	0.288	-0.293
SNX27	1	0.670	-0.240	-0.887			0.166	0.054
AKTIP	1	-1.660	2.970
M6PR	0	-0.030	-0.320
M6PR	0	-0.030	-0.320				0.170	-0.605
CHMP5	0	0.050	0.130
HMGXB4	0	-0.280	0.860				0.982	0.423
HMGXB4	0	-0.280	0.860
MGRN1	0	-1.050	1.080
DENND3	0	-0.800	1.200
VAMP7	0	0.400	0.320				0.660	-0.175
SORT1	0
HOOK1	0	1.180	-1.060
SCYL2	0	0.190	0.660	-1.737	-0.391	-0.661	-1.365	-0.253
KIF13A	0	-1.390	2.280
RHOB	0	0.130	-0.210
VIPAS39	0	-0.350	0.330
STX8	0						0.283	0.633
HGS	0	0.020	0.300	-0.211			0.737	0.264
RAB12	0	0.390	0.030

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
AKTIP	Phosphorylation	T29	0.157		_TLTGDVKT(ph)SPPR_
AKTIP	Phosphorylation	S30	0.157	0.228	_TLTGDVKTS(ph)PPR_
CHMP5	Ubiquitylation	K110	1.116	0.375	_TTVDAMK(gl)LGVK_
DENND3	Ubiquitylation	K38		-0.932	_SLEQVAYK(gl)K_
DENND3	Ubiquitylation	K39		-0.932	_SLEQVAYK(gl)K_
HGS	Ubiquitylation	K126	0.088	0.464	_YK(gl)VVQDTYQIMK_
HGS	Ubiquitylation	K192	0.015	0.751	_ACGQIFCGK(gl)CSSK_
HGS	Ubiquitylation	K202	-0.163	0.558	_YSTIPK(gl)FGIEK_
HGS	Ubiquitylation	K207	-0.193	0.798	_FGIEK(gl)EVR_
HGS	Ubiquitylation	K283	-0.826	-0.270	_QK(gl)STYTSYPK_
HGS	Ubiquitylation	K337	0.097		_NYWEK(gl)KQEEAR_
HGS	Ubiquitylation	K473	-0.154		_LYYEGLQDK(gl)LAQIR_
HGS	Ubiquitylation	K513	-0.289		_QIQLAQK(gl)LEIMR_
HGS	Ubiquitylation	K520	0.211	1.230	_QK(gl)KQEYLEVQR_
HGS	Ubiquitylation	K521	-1.344	1.230	_K(gl)QEYLEVQR_
HGS	Ubiquitylation	K551	-0.260	0.554	_LEQQK(gl)QTVQM(ox)R_
HMGXB4	Phosphorylation	S101	0.398	0.441	_S(ph)SPQSTDTAMDLLK_
HMGXB4	Phosphorylation	S102	0.689	0.609	_KSS(ph)PQSTDTAMDLLK_
HMGXB4	Phosphorylation	S497	0.369	0.453	_ASSVGVLS(ph)PQKK_
HMGXB4	Phosphorylation	S502	-0.673	-0.959	_S(ph)PPTTMLLPAS(ph)PAK_
HMGXB4	Phosphorylation	S512	-0.673	-0.959	_S(ph)PPTTM(ox)LLPAS(ph)PAK_
HOOK1	Ubiquitylation	K424	-0.352		_DTLK(gl)ETNEELR_
HOOK1	Ubiquitylation	K612		-0.788	_MYLEK(gl)AR_
HOOK1	Ubiquitylation	K678		0.231	_SLAFQK(gl)LGMESR_
HOOK1	Phosphorylation	S719	-0.815	-0.265	_NLS(ph)VKVPATTSD_
KIF13A	Phosphorylation	S1738	0.143	-0.064	_TGS(ph)CSELDACPSK_
M6PR	Phosphorylation	S267	-0.203	0.348	_GVGDDQLGEES(ph)EERDDHLLPM_
MGRN1	Ubiquitylation	K164	0.959	0.250	_SPSLQSETVHYK(gl)R_
MGRN1	Ubiquitylation	K449	0.272	-0.572	_GRPQSK(gl)APDSTLR_
MGRN1	Phosphorylation	S523	0.239	0.263	_AASIENVLQDS(ph)SPEHCGR_
MGRN1	Phosphorylation	S524	-0.088	0.126	_AASIENVLQDSS(ph)PEHCGR_
RAB12	Phosphorylation	S21	-0.451	0.146	_RAGGGGGLGAGS(ph)PALSGGQGR_
RAB12	Ubiquitylation	K172	0.251	0.981	_QQGEK(gl)FAQQITGMR_
RAB7A	Ubiquitylation	K32	0.922	1.260	_K(gl)FSNQYK_
RAB7A	Ubiquitylation	K38	0.713	1.294	_FSNQYK(gl)ATIGADFLTK_
RAB7A	Ubiquitylation	K146		-0.718	_AQAWCYSK(gl)NNIPYFETSAK_
RHOB	Ubiquitylation	K135	0.050	-0.281	_MK(gl)QEPVRTDDGR_
SCYL2	Phosphorylation	S677	0.455	0.911	_RAS(ph)LTLEEK_
SNX27	Phosphorylation	S51		1.585	_SES(ph)GYGFNVR_
SORT1	Ubiquitylation	K294		-0.104	_TSDLGK(gl)SFK_
SORT1	Ubiquitylation	K388	-2.073	-0.343	_GIVYSK(gl)SLDR_
STX8	Ubiquitylation	K98	-0.839	-0.064	_LLLASFK(gl)NEGAEPDLIR_
STX8	Ubiquitylation	K117	0.144	1.154	_SSLMSEEAK(gl)R_
VAMP7	Ubiquitylation	K125	0.653	1.311	_GLDK(gl)VMETQAQVDELK_
VAMP7	Ubiquitylation	K137	0.694	1.092	_VMETQAQVDELK(gl)GIMVR_
VAMP7	Ubiquitylation	K172	0.306		_TENLVDSSVTFK(gl)TTSR_
VIPAS39	Phosphorylation	S147	1.367	1.257	_TRPGS(ph)FQSLSDALSDTPAK_