RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
KIF4A	2	0.450	-0.410				-0.346	-0.337
KIF4A	2	0.450	-0.410		0.413
KIF1B	1	-1.430	2.950
KIF1B	1	-1.430	2.950
AP3B1	1			0.283			0.568	0.447
SNAPIN	1	-2.700	4.770
AP3M1	1	2.120	-1.010	-0.529			-0.213	-0.553
AP3D1	0	-0.770	1.000
AP3D1	0	-0.770	1.000	-3.722			0.111	0.159
AP3M2	0	0.330	-0.600	-0.529			-0.213	-0.553
KIF1A	0	0.540	-0.550	0.592
KIF1A	0	0.540	-0.550				0.715	-0.651
SOD1	0	1.450	-1.250
AP3S2	0	-0.930	0.720
AP3S1	0	1.210	-1.210	-1.064			-0.141

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
AP3B1	Ubiquitylation	K74		3.486	_IVGM(ox)IAKGK(gl)_
AP3B1	Phosphorylation	S276	0.667	0.762	_NFYES(ph)DDDQKEK_
AP3D1	Ubiquitylation	K7	0.529	0.464	_MVK(gl)GSIDR_
AP3D1	Phosphorylation	S9		0.952	_MVKGS(ph)IDR_
AP3D1	Ubiquitylation	K379	0.803	0.640	_NLMEIVKK(gl)_
AP3D1	Phosphorylation	T735	0.260	-0.981	_NTET(ph)SKSPEKDVPM(ox)VEK_
AP3D1	Phosphorylation	S736	-0.691	-0.892	_NTETS(ph)KSPEKDVPM(ox)VEK_
AP3D1	Phosphorylation	S738	-0.194	-0.008	_NTETSKS(ph)PEKDVPMVEK_
AP3M1	Ubiquitylation	K283	-0.147		_HSISFK(gl)ENSSCGR_
AP3M1	Ubiquitylation	K413	-0.636	-0.807	_AGK(gl)FQVR_
AP3M2	Ubiquitylation	K283	-0.147		_HSISFK(gl)ENSSCGR_
AP3M2	Ubiquitylation	K413	-0.636	-0.807	_AGK(gl)FQVR_
AP3S1	Ubiquitylation	K18	-0.109	0.558	_LSK(gl)FYQPYSEDTQQQIIR_
AP3S1	Ubiquitylation	K166	-0.248		_AVSAVK(gl)NMNLPEIPR_
AP3S1	Ubiquitylation	K193	-0.977		_VPNLPSFK(gl)_
AP3S2	Ubiquitylation	K350		0.204	_LEK(gl)SEGGLSAAPAR_
AP3S2	Ubiquitylation	K367	-1.289	-0.624	_AVSAVK(gl)NINLPEIPR_
KIF1A	Ubiquitylation	K243	0.567	0.154	_VSK(gl)ISLVDLAGSER_
KIF1A	Ubiquitylation	K373	0.989		_ELK(gl)DEVTR_
KIF1A	Phosphorylation	S425	0.226	0.513	_AAS(ph)VSSLHER_
KIF1A	Phosphorylation	S428		0.256	_AASVSS(ph)LHER_
KIF1A	Ubiquitylation	K685	-0.482	-1.308	_LEALQK(gl)QMDSR_
KIF1A	Ubiquitylation	K753	-0.683		_EANAISVELK(gl)K_
KIF1A	Ubiquitylation	K754	-1.146	-0.455	_EANAISVELKK(gl)_
KIF1A	Ubiquitylation	K977	-0.660	-0.529	_VAIVSEK(gl)GEVK_
KIF1A	Ubiquitylation	K1011	-1.711	-0.039	_QSGTAK(gl)ISFDDQHFEK_
KIF1A	Ubiquitylation	K1140	-1.790	-1.571	_HDEAFSTEPLK(gl)NTGR_
KIF1A	Phosphorylation	S1195	-0.738	-0.620	_DVLS(ph)PLRPSR_
KIF1A	Phosphorylation	S1446	0.354	0.201	_VTGVYELSLCHVADAGS(ph)PGMQR_
KIF1A	Phosphorylation	S1477	0.580	0.528	_S(ph)DSLILDHQWELEK_
KIF1A	Phosphorylation	S1479	0.245	0.345	_SDS(ph)LILDHQWELEK_
KIF1A	Ubiquitylation	K1563	-5.831	1.045	_ELAVK(gl)CLR_
KIF1A	Phosphorylation	S1602	0.026	-0.209	_DPS(ph)MSPLGVATLTPSSTCPSLVEGR_
KIF1A	Phosphorylation	S1604		-0.266	_DPSMS(ph)PLGVATLTPSSTCPSLVEGR_
KIF1A	Phosphorylation	S1641	-1.145	-1.108	_PAS(ph)PEPELLPEADSK_
KIF1A	Ubiquitylation	K1687		-1.299	_VSPIVSK(gl)K_
KIF1A	Ubiquitylation	K1688		-1.299	_VSPIVSK(gl)K_
KIF1B	Ubiquitylation	K716		-1.295	_LQALQK(gl)QVETR_
KIF1B	Ubiquitylation	K999	-2.236	-0.546	_VAIVSEK(gl)GEVR_
KIF1B	Phosphorylation	S1043	0.427	0.296	_SGLS(ph)LEELR_
KIF1B	Ubiquitylation	K1089	-0.939	-1.059	_INDLDLK(gl)SSTLLDGK_
KIF1B	Phosphorylation	S1644	-1.348		_AS(ph)SPCPEFEQFQIVPAVETPYLAR_
KIF1B	Phosphorylation	S1645	-1.266	-1.231	_ASS(ph)PCPEFEQFQIVPAVETPYLAR_
KIF4A	Ubiquitylation	K613	1.103		_LQELEGQIADLK(gl)K_
KIF4A	Ubiquitylation	K614	1.103		_LQELEGQIADLK(gl)K_
KIF4A	Ubiquitylation	K715	0.852	1.337	_LK(gl)DALQK_
KIF4A	Phosphorylation	T802	1.153		_RT(ph)FSLTEVR_
KIF4A	Phosphorylation	S804	1.144	0.733	_TFS(ph)LTEVR_
KIF4A	Phosphorylation	S818	-0.103		_GQVSESEDS(ph)ITK_
KIF4A	Phosphorylation	T820	0.302	0.224	_GQVSESEDSIT(ph)K_
KIF4A	Ubiquitylation	K883	-0.435		_IQVSK(gl)LESSLK_
KIF4A	Ubiquitylation	K993	0.075		_QK(gl)LTLLQVASR_
KIF4A	Phosphorylation	T1184		-1.056	_T(ph)PPAPSPFDLPELK_
KIF4A	Phosphorylation	S1228	1.720	2.072	_RALASNTSFFSGCS(ph)PIEEEAH_
SNAPIN	Phosphorylation	T14	0.785	0.681	_(ac)AGAGSAAVSGAGT(ph)PVAGPTGR_
SNAPIN	Phosphorylation	S133	-0.868		_AM(ox)LDSGIYPPGS(ph)PGK_
SNAPIN	Ubiquitylation	K136	0.295		_AMLDSGIYPPGSPGK(gl)_
SOD1	Ubiquitylation	K4	-0.329		_(ac)ATK(gl)AVCVLK_
SOD1	Ubiquitylation	K10	0.211	0.582	_AVCVLK(gl)GDGPVQGIINFEQK_
SOD1	Ubiquitylation	K24	-0.435	-0.086	_GDGPVQGIINFEQK(gl)ESNGPVK_
SOD1	Ubiquitylation	K31	-0.109	0.332	_ESNGPVK(gl)VWGSIK_
SOD1	Phosphorylation	S99		0.405	_HVGDLGNVTADKDGVADVS(ph)IEDSVISLSGDHCIIGR_
SOD1	Ubiquitylation	K123	0.352	0.004	_TLVVHEK(gl)ADDLGK_
SOD1	Ubiquitylation	K129	0.143		_ADDLGK(gl)GGNEESTK_
SOD1	Ubiquitylation	K137	0.464	0.934	_ADDLGKGGNEESTK(gl)TGNAGSR_