RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
ASUN	2	-1.610	2.060	-0.729	1.913	1.907	-0.157	0.075
CUL4A	2	-0.750	1.080	0.255	2.640	2.785	0.765	0.477
PLK1	2			3.098	-0.387	0.212	-1.949	-0.610
POLD1	0	1.600	-1.300	-0.932			0.362	0.283
POLD1	0	1.600	-1.300
CYLD	0	-1.250	2.010
MAEA	0	-0.140	0.200
ZNF268	0	1.050	-0.230
SIRT1	0	0.910	-0.910
AATF	0						0.062	0.323
FBXO5	0
NEK6	0	0.580	-1.160
CDKN1A	0	1.080	-0.750
RB1	0	1.180	-1.070		0.429	0.755
RB1	0	1.180	-1.070
SIK1	0	0.130	-0.480
CDC123	0	-0.710	0.690
HDAC3	0	-0.790	1.070
FOXL1	0	0.560	-0.350	-1.217	-0.424	0.659
PTCH1	0	0.630	-0.690
PIM3	0	0.860	-0.790

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
AATF	Phosphorylation	S203	0.544	0.457	_AGDRNS(ph)EDDGVVMTFSSVK_
AATF	Ubiquitylation	K283		0.128	_ALK(gl)ALLR_
AATF	Ubiquitylation	K475		0.282	_K(gl)TSSLDPNDQVAMGR_
AATF	Ubiquitylation	K496		0.572	_QWLAIQK(gl)LR_
ASUN	Ubiquitylation	K167	0.216	-0.015	_IICITNAK(gl)SDSHVR_
CDC123	Ubiquitylation	K206	-0.224	0.298	_DYTQYYDHISKQK(gl)_
CDC123	Ubiquitylation	K218		0.669	_CIQDFFK(gl)K_
CDC123	Ubiquitylation	K219	1.041	0.669	_CIQDFFKK(gl)_
CDC123	Ubiquitylation	K327	-0.077	-0.348	_LIDFLK(gl)LKR_
CDC123	Ubiquitylation	K329		-0.049	_LIDFLKLK(gl)_
CDKN1A	Ubiquitylation	K188	-2.505	-1.077	_QTSMTDFYHSK(gl)R_
CUL4A	Ubiquitylation	K8	0.690		_K(gl)GSFSALVGR_
CUL4A	Phosphorylation	S10	0.480	0.526	_KGS(ph)FSALVGR_
CUL4A	Ubiquitylation	K104	0.192		_VSPMLYK(gl)QLR_
CYLD	Ubiquitylation	K114	-1.068	0.927	_FSLFK(gl)NR_
FBXO5	Ubiquitylation	K113		-0.879	_IVQLETESK(gl)R_
FBXO5	Ubiquitylation	K207	-1.407	-0.639	_VVCSTLKK(gl)_
FBXO5	Ubiquitylation	K352	0.933	0.734	_LSNQGDQK(gl)GSTYSR_
FOXL1	Phosphorylation	S6	0.325	0.055	_YS(ph)VSSPNSLGVVPYLGGEQSYYR_
FOXL1	Phosphorylation	S235		-1.239	_TENGTCPS(ph)PPQPLS(ph)PAAALGSGSAAAVPK_
FOXL1	Phosphorylation	S241		-1.239	_TENGTCPS(ph)PPQPLS(ph)PAAALGSGSAAAVPK_
FOXL1	Phosphorylation	S259	-0.376	-0.198	_IES(ph)PDSSSSSLSSGSSPPGSLPSAR_
FOXL1	Phosphorylation	S320	0.313	0.178	_GS(ph)PQSAAAELSSGLLASAAASSR_
FOXL1	Phosphorylation	S323		0.347	_GSPQS(ph)AAAELSSGLLASAAASSR_
FOXL1	Ubiquitylation	K554	-0.030	0.013	_TSGAFVYDCSK(gl)F_
HDAC3	Phosphorylation	S424		-0.354	_GPEENYSRPEAPNEFYDGDHDNDKES(ph)DVEI_
MAEA	Ubiquitylation	K31	-0.051	-0.270	_VPYETLNK(gl)R_
MAEA	Ubiquitylation	K100		0.293	_AVESIQAEDESAKLCK(gl)R_
MAEA	Ubiquitylation	K144		-0.868	_CGYYNTAVK(gl)LAR_
MAEA	Ubiquitylation	K342		-1.175	_TPQCYK(gl)EDGSSKSPDCPVCSR_
NEK6	Ubiquitylation	K277	-1.179	-0.174	_IEQCDYPPLPGEHYSEK(gl)LR_
PIM3	Ubiquitylation	K30		-0.621	_ILQPAK(gl)ADKESFEK_
PIM3	Ubiquitylation	K69		0.591	_IADGLPVAVK(gl)HVVK_
PIM3	Ubiquitylation	K172		-0.139	_DIK(gl)DENLLVDLR_
PLK1	Ubiquitylation	K358	-2.258		_EK(gl)EEPVVR_
PLK1	Ubiquitylation	K574	1.656		_LSLLEEYGCCK(gl)ELASR_
POLD1	Ubiquitylation	K414		-1.315	_AQTLK(gl)VQTFPFLGR_
POLD1	Ubiquitylation	K439		-1.108	_DSSFQSK(gl)QTGRR_
POLD1	Ubiquitylation	K447		-1.286	_DTK(gl)VVSMVGR_
POLD1	Ubiquitylation	K554		-0.798	_GQQVK(gl)VVSQLLR_
POLD1	Ubiquitylation	K674	-1.082	-1.843	_TPTGDEFVK(gl)TSVR_
POLD1	Ubiquitylation	K758		-0.638	_TK(gl)QLVESK_
POLD1	Ubiquitylation	K853	-0.080	-1.776	_MDCK(gl)GLEAVR_
POLD1	Ubiquitylation	K911	-0.089	-0.915	_IDISQLVITK(gl)ELTR_
POLD1	Ubiquitylation	K923		-2.496	_AASDYAGK(gl)QAHVELAER_
POLD1	Ubiquitylation	K1033	0.475	-0.930	_VGGLLAFAK(gl)R_
POLD1	Ubiquitylation	K1065	-0.208		_ESELYQK(gl)EVSHLNALEER_
PTCH1	Ubiquitylation	K904		-0.390	_DKPIDISQLTK(gl)QR_
RB1	Phosphorylation	S69	-3.602	-3.397	_TAATAAAAAAEPPAPPPPPPPEEDPEQDS(ph)GPEDLPLVR_
RB1	Ubiquitylation	K97	-0.546		_LK(gl)IPDHVR_
RB1	Phosphorylation	T388	0.005	0.116	_TLQTDSIDSFETQRT(ph)PR_
RB1	Phosphorylation	T405	-0.851	-0.901	_KSNLDEEVNVIPPHT(ph)PVR_
RB1	Phosphorylation	S820		-0.019	_S(ph)PYKFPSSPLR_
RB1	Ubiquitylation	K823	-2.214		_SPYK(gl)FPSSPLR_
RB1	Phosphorylation	S827	0.824	0.111	_FPSS(ph)PLR_
RB1	Phosphorylation	S839	-0.701	-1.045	_IPGGNIYIS(ph)PLKS(ph)PYK_
RB1	Ubiquitylation	K842		-0.751	_IPGGNIYISPLK(gl)SPYK_
RB1	Phosphorylation	S843	-0.701	-0.022	_IPGGNIYIS(ph)PLKS(ph)PYK_
RB1	Ubiquitylation	K846	-2.084		_SPYK(gl)ISEGLPTPTK_
RB1	Phosphorylation	T853	0.039	-0.555	_ISEGLPT(ph)PTKM(ox)T(ph)PR_
RB1	Ubiquitylation	K856	-1.350		_ISEGLPTPTK(gl)MTPR_
RB1	Phosphorylation	T858	-0.782	0.564	_ISEGLPT(ph)PTKMT(ph)PR_
RB1	Ubiquitylation	K879	-0.187		_FQK(gl)INQMVCNSDR_
SIK1	Phosphorylation	S435		-0.305	_PVS(ph)PSSLLDTAISEEAR_
SIRT1	Phosphorylation	S14	-0.369	-0.246	_(ac)ADEAALALQPGGS(ph)PSAAGADR_
SIRT1	Phosphorylation	S16	-0.306	-1.665	_(ac)ADEAALALQPGGS(ph)PS(ph)AAGADREAASSPAGEPLR_
SIRT1	Phosphorylation	S26	-1.047	-0.245	_EAAS(ph)SPAGEPLR_
SIRT1	Phosphorylation	S27	0.351	-0.363	_EAASS(ph)PAGEPLR_
SIRT1	Phosphorylation	S47	-0.574	-0.607	_S(ph)PGEPGGAAPER_
SIRT1	Ubiquitylation	K238	-1.641		_RK(gl)DINTIEDAVK_
SIRT1	Ubiquitylation	K499	-2.138	-0.204	_LGGEYAK(gl)LCCNPVK_
SIRT1	Ubiquitylation	K578	-2.782		_GCMEEK(gl)PQEVQTSR_
SIRT1	Ubiquitylation	K601	-3.051		_NVESIAEQMENPDLK(gl)NVGSSTGEK_
ZNF268	Ubiquitylation	K193		0.095	_LCLLSTK(gl)YLSR_