RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
NUP153	1	-0.870	1.040
NUP153	1	-0.870	1.040	-0.093			0.412	0.267
NUP214	1	2.360	-1.290	0.632			0.242	0.147
CTDSP1	1	2.470	-1.010
MAP3K1	0	0.750	-1.270
PPM1A	0	-0.680	1.340	0.402
PPM1A	0	-0.680	1.340		-1.556	-0.874
MAPK3	0
UBE2I	0	-0.320	0.480	-0.694			-0.283	0.274
PIAS4	0	-1.510	2.250					-1.454
KPNB1	0	-1.100	2.030	0.513	-0.057	0.327	0.627	0.452
SMAD4	0	0.420	-0.390		0.020	0.556		-0.485
CTDSPL	0	0.540	-0.790
SMAD3	0	-1.560	1.800
SMAD3	0	0.270	-0.340
SMAD2	0

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
CTDSP1	Ubiquitylation	K190		-0.115	_GNYVK(gl)DLSR_
CTDSPL	Ubiquitylation	K190		-0.115	_GNYVK(gl)DLSR_
KPNB1	Ubiquitylation	K68	0.403	0.420	_NSLTSK(gl)DPDIK_
KPNB1	Ubiquitylation	K73		-0.134	_NSLTSKDPDIK(gl)AQYQQR_
KPNB1	Ubiquitylation	K211	-0.036		_ANFDK(gl)ESER_
KPNB1	Ubiquitylation	K549	-0.563		_DCYPAVQK(gl)TTLVIMER_
KPNB1	Ubiquitylation	K835	-0.212	0.450	_DVLK(gl)LVEAR_
KPNB1	Ubiquitylation	K859		0.118	_AK(gl)TLATWATK_
KPNB1	Ubiquitylation	K867	0.636	1.498	_TLATWATK(gl)ELR_
MAP3K1	Phosphorylation	S292		0.209	_RAPS(ph)PDGFSPYSPEETNR_
MAP3K1	Phosphorylation	S506	1.427		_SHDFYSHELS(ph)SPVDSPSSLR_
MAP3K1	Phosphorylation	S507		1.436	_SHDFYSHELSS(ph)PVDSPSSLR_
MAP3K1	Phosphorylation	S923	0.127	-0.120	_LSAS(ph)SEDISER_
MAPK3	Phosphorylation	Y204	-0.807	-2.487	_IADPEHDHTGFLTEY(ph)VATR_
MAPK3	Ubiquitylation	K289		-0.608	_NYLQSLPSKTK(gl)_
NUP153	Ubiquitylation	K15	0.265	-0.926	_(ac)ASGAGGVGGGGGGK(gl)IR_
NUP153	Ubiquitylation	K48		0.272	_VTESVK(gl)NIVPGWLQR_
NUP153	Phosphorylation	S192	0.745	1.127	_AS(ph)DKDITVSK_
NUP153	Phosphorylation	S209	0.080	0.335	_NTSLPPLWS(ph)PEAER_
NUP153	Ubiquitylation	K263	-0.455	-1.080	_TSQLGDSPFYPGK(gl)TTYGGAAAAVR_
NUP153	Phosphorylation	S547	1.532	1.480	_VQMTS(ph)PSSTGSPMFK_
NUP153	Phosphorylation	S560	0.248	0.051	_FSS(ph)PIVK_
NUP153	Phosphorylation	T619		-0.625	_KT(ph)PPEDCEGPFRPAEILK_
NUP153	Ubiquitylation	K644	0.023		_EGSVLDILK(gl)SPGFASPK_
NUP153	Phosphorylation	S645		0.720	_EGSVLDILKS(ph)PGFASPK_
NUP153	Phosphorylation	S664	2.006	0.984	_IDSVAAQPTATS(ph)PVVYTR_
NUP153	Ubiquitylation	K724	-0.298		_DTAK(gl)QTGIETPNK_
NUP153	Ubiquitylation	K999	-0.710		_FGVSSESK(gl)PEEVKK_
NUP153	Ubiquitylation	K1004	-0.910	-1.408	_FGVSSESKPEEVK(gl)K_
NUP153	Ubiquitylation	K1087	-0.304	-0.185	_SSFNLGTIETK(gl)SASVAPFTCK_
NUP153	Ubiquitylation	K1097	0.179		_SASVAPFTCK(gl)TSEAK_
NUP153	Ubiquitylation	K1102	-0.308	-0.451	_TSEAK(gl)KEEMPATK_
NUP153	Ubiquitylation	K1137	-0.654		_TEEK(gl)QQEPVTSTSLVFGK_
NUP153	Ubiquitylation	K1152	-0.292		_TEEKQQEPVTSTSLVFGKK(gl)_
NUP153	Ubiquitylation	K1188	-1.266	-1.535	_STFSFSMTK(gl)PSEKESEQPAK_
NUP153	Ubiquitylation	K1192	-1.547	-1.459	_STFSFSMTKPSEK(gl)ESEQPAK_
NUP153	Phosphorylation	S1494		-0.436	_NVFSSSGTSFS(ph)GRK_
NUP214	Phosphorylation	S430	-1.401	-1.571	_S(ph)PGSTPTTPTSSQAPQK_
NUP214	Phosphorylation	S433	-0.565	-1.014	_SPGS(ph)TPTT(ph)PTSSQAPQK_
NUP214	Phosphorylation	T436	-0.669	-0.832	_SPGS(ph)TPT(ph)TPTSSQAPQK_
NUP214	Phosphorylation	T437	0.179	-0.458	_SPGS(ph)TPTT(ph)PTSSQAPQK_
NUP214	Phosphorylation	T439		-0.425	_SPGS(ph)TPTTPT(ph)SSQAPQK_
NUP214	Phosphorylation	S646	1.342	0.945	_SSVLPS(ph)PSGR_
NUP214	Phosphorylation	S657	0.933	0.690	_SAQGSSS(ph)PVPSMVQK_
NUP214	Phosphorylation	S678	-0.473	-0.254	_ITPPAAKPGS(ph)PQAK_
NUP214	Phosphorylation	S940	0.199	0.044	_VPAKLS(ph)PMK_
NUP214	Phosphorylation	S1023	-0.863	-0.765	_TPS(ph)IQPSLLPHAAPFAK_
NUP214	Phosphorylation	S1081	-1.320	-1.047	_HGAPS(ph)PSHPISAPQAAAAAALR_
PIAS4	Ubiquitylation	K57	0.068	-0.936	_ALQLVQFDCSPELFKK(gl)_
PIAS4	Ubiquitylation	K125		-2.654	_LPAK(gl)TLKPEVR_
PIAS4	Ubiquitylation	K330		-1.699	_VSLICPLVK(gl)MR_
PPM1A	Ubiquitylation	K278		-0.176	_VCNEVVDTCLYK(gl)GSR_
SMAD2	Phosphorylation	T8	-0.896	-0.885	_(ac)SSILPFT(ph)PPVVK_
SMAD2	Ubiquitylation	K13	-0.058		_(ac)SSILPFTPPVVK(gl)R_
SMAD3	Ubiquitylation	K13	-0.704		_(ac)SSILPFTPPIVK(gl)R_
UBE2I	Ubiquitylation	K49	0.535		_K(gl)GTPWEGGLFK_
UBE2I	Ubiquitylation	K59	0.481		_GTPWEGGLFK(gl)LR_