RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
RAB7A	1	1.540	-0.590	0.299	1.971	-0.775	0.288	-0.293
RAB34	1	3.070	-0.960
RAB34	1	3.070	-0.960				0.141
RAB22A	1	2.620	-1.080				0.590
RAB22A	1	2.620	-1.080	0.223
CORO1A	0	0.430	0.570	-0.555			-0.197	-0.725
RAB11A	0	1.130	-0.130	0.324			0.697	0.458
RAB11A	0	1.130	-0.130
RAB23	0	1.290	-1.270				-0.106	0.952
STX12	0	0.070	0.130				-0.053	0.028
RAB14	0	0.630	-0.150				0.314	0.321
ANXA11	0	0.380	-0.900	-0.381			0.127	-0.033
RAB9B	0	-0.240	-0.300				0.793	0.935
RAB9A	0	1.450	-0.760				0.793	0.935
RAB38	0	-1.070	1.480				1.011	0.091
VAMP7	0	0.400	0.320				0.660	-0.175
ITGAV	0			-0.297			-0.090	0.262
RP3-365I19	0
SRGAP2	0
RAB8B	0	-0.070	0.130	-0.051			0.529	0.549
RAB8B	0	-0.070	0.130		1.641	-1.484	0.560	0.491
RAB8B	0	-0.070	0.130				-0.216
RAB8A	0	-0.300	0.550				0.568	0.278
RAB8A	0	-0.300	0.550		1.641	-1.484	0.560	0.491
RAB31	0	-0.330	-0.520				0.590
RAB31	0	-0.330	-0.520	0.223
RAB39A	0	-0.780	0.530		1.078	-1.682
RAB11B	0	-0.130	-0.140	0.324			0.697	0.458
RAB11B	0	-0.130	-0.140

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ANXA11	Ubiquitylation	K214	0.510		_AMK(gl)GFGTDEQAIIDCLGSR_
ANXA11	Ubiquitylation	K248	-0.026		_TAYGK(gl)DLIK_
ANXA11	Ubiquitylation	K315	0.239		_AYK(gl)AEFKK_
ANXA11	Ubiquitylation	K378	0.405	0.796	_LGTDESK(gl)FNAVLCSR_
ANXA11	Ubiquitylation	K408	0.202	0.420	_DIEK(gl)SICR_
ITGAV	Ubiquitylation	K233		0.373	_YDPNVYSIK(gl)YNNQLATR_
ITGAV	Ubiquitylation	K360		0.294	_ASGDFQTTK(gl)LNGFEVFAR_
ITGAV	Ubiquitylation	K923		0.636	_GK(gl)SAILYVK_
RAB11A	Ubiquitylation	K69	-0.533	0.554	_VVLIGDSGVGK(gl)SNLLSR_
RAB11A	Ubiquitylation	K103	-0.360	-0.185	_SIQVDGK(gl)TIK_
RAB11A	Ubiquitylation	K106		0.335	_SIQVDGKTIK(gl)_
RAB11A	Ubiquitylation	K224	-0.187	0.901	_IVSQK(gl)QMSDRR_
RAB11B	Ubiquitylation	K69	-0.533	0.554	_VVLIGDSGVGK(gl)SNLLSR_
RAB11B	Ubiquitylation	K103	-0.360	-0.185	_SIQVDGK(gl)TIK_
RAB11B	Ubiquitylation	K106		0.335	_SIQVDGKTIK(gl)_
RAB14	Ubiquitylation	K170	-1.161		_TGENVEDAFLEAAK(gl)K_
RAB14	Ubiquitylation	K171	-1.161	-0.915	_TGENVEDAFLEAAKK(gl)_
RAB14	Ubiquitylation	K193		-0.640	_IYQNIQDGSLDLNAAESGVQHK(gl)PSAPQGGR_
RAB22A	Phosphorylation	S36	0.043	0.209	_FVQDHFDHNIS(ph)PTIGASFMTK_
RAB22A	Ubiquitylation	K178	-0.542		_RIPSTDANLPSGGK(gl)GFK_
RAB22A	Ubiquitylation	K181	-0.651		_RIPSTDANLPSGGK(gl)GFK_
RAB31	Phosphorylation	S36	0.043	0.209	_FVQDHFDHNIS(ph)PTIGASFMTK_
RAB31	Ubiquitylation	K178	-0.542		_RIPSTDANLPSGGK(gl)GFK_
RAB31	Ubiquitylation	K181	-0.651		_RIPSTDANLPSGGK(gl)GFK_
RAB34	Ubiquitylation	K267	0.108	-0.979	_INSDDSNLYLTASK(gl)K_
RAB34	Ubiquitylation	K268	0.108	-0.979	_INSDDSNLYLTASK(gl)K_
RAB38	Ubiquitylation	K20		-1.240	_VLVVGDAAVGK(gl)TSLVQR_
RAB39A	Ubiquitylation	K144	0.298	0.546	_EEAEK(gl)LSADCGMK_
RAB39A	Ubiquitylation	K180	-0.955		_DIYELIK(gl)K_
RAB7A	Ubiquitylation	K32	0.922	1.260	_K(gl)FSNQYK_
RAB7A	Ubiquitylation	K38	0.713	1.294	_FSNQYK(gl)ATIGADFLTK_
RAB7A	Ubiquitylation	K146		-0.718	_AQAWCYSK(gl)NNIPYFETSAK_
RAB8A	Ubiquitylation	K3	0.848		_(ac)AK(gl)TYDYLFK_
RAB8A	Ubiquitylation	K138	1.091		_ERGEK(gl)LALDYGIK_
RAB8A	Ubiquitylation	K163		0.199	_LLLGNK(gl)CDMEAK_
RAB8A	Ubiquitylation	K174	-0.188		_VQK(gl)EQADKLAR_
RAB8A	Phosphorylation	S185	0.117	0.264	_KLEGNSPQGS(ph)NQGVK_
RAB8A	Ubiquitylation	K190	-0.573		_LEGNSPQGSNQGVK(gl)ITPDQQK_
RAB8A	Ubiquitylation	K213	-0.059	0.420	_DILLK(gl)SGGR_
RAB8B	Ubiquitylation	K102	-0.105		_SFENISK(gl)WLR_
RAB8B	Ubiquitylation	K163		0.199	_LLLGNK(gl)CDMEAK_
RAB8B	Ubiquitylation	K174	-0.188		_VQK(gl)EQADKLAR_
RAB8B	Ubiquitylation	K213	-0.059	0.420	_DILLK(gl)SGGR_
RAB9A	Ubiquitylation	K4	-0.153	-0.091	_(ac)AGK(gl)SSLFK_
RAB9A	Phosphorylation	T175		0.548	_VLAT(ph)EDRSDHLIQTDTVNLHR_
RAB9A	Phosphorylation	S179		0.548	_VLAT(ph)EDRSDHLIQTDTVNLHR_
RAB9B	Ubiquitylation	K4	-0.153	-0.091	_(ac)AGK(gl)SSLFK_
RAB9B	Phosphorylation	T175		0.548	_VLAT(ph)EDRSDHLIQTDTVNLHR_
RAB9B	Phosphorylation	S179		0.548	_VLAT(ph)EDRSDHLIQTDTVNLHR_
RP3-365I19.1-001	Ubiquitylation	K33		-0.066	_AQLTEQMK(gl)CLDQQCELR_
SRGAP2	Ubiquitylation	K33		-0.066	_AQLTEQMK(gl)CLDQQCELR_
SRGAP2	Ubiquitylation	K182		-0.693	_TYHM(ox)YNADSISAQSKLK(gl)_
SRGAP2	Ubiquitylation	K245		-0.743	_YTENKLK(gl)_
SRGAP2	Ubiquitylation	K381		-0.208	_LSTLK(gl)IENEEVKK_
SRGAP2	Ubiquitylation	K438		-1.020	_STVSETFMSKPSIAK(gl)R_
SRGAP2	Phosphorylation	S1053	-0.109	-0.231	_TNATS(ph)PGVNSSTS(ph)PQSTDK_
SRGAP2	Phosphorylation	S1061	-0.109	-0.174	_TNATS(ph)PGVNSSTS(ph)PQSTDK_
STX12	Ubiquitylation	K53	0.374	1.032	_NLMSQLGTK(gl)QDSSK_
STX12	Ubiquitylation	K58	-0.103	0.738	_QDSSK(gl)LQENLQQLQHSTNQLAK_
STX12	Ubiquitylation	K127	0.260		_VSEK(gl)EKESIAR_
STX12	Ubiquitylation	K129	-0.233		_VSEKEK(gl)ESIAR_
STX12	Phosphorylation	S142	0.838	0.911	_AGSRLS(ph)AEER_
VAMP7	Ubiquitylation	K125	0.653	1.311	_GLDK(gl)VMETQAQVDELK_
VAMP7	Ubiquitylation	K137	0.694	1.092	_VMETQAQVDELK(gl)GIMVR_
VAMP7	Ubiquitylation	K172	0.306		_TENLVDSSVTFK(gl)TTSR_