RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
NBN	2	-0.220	-0.170		0.708	0.569	-0.563	0.354
MSH6	2	-0.410	0.140	-0.115	0.232	0.645	0.407	0.101
ERCC1	1	-1.720	3.820
ERCC1	1	-1.460	2.450
MSH2	1	-0.130	0.010	0.224	0.457	0.838	0.840	0.366
EXOSC3	1	-1.840	3.020	-0.152	-0.472	-0.227	-0.542	-0.121
XRCC4	1	-0.240	0.070
RNF168	1	-0.220	-0.130	2.341
RNF168	1	0.210	-0.350	2.341
MLH1	0	-0.460	0.110	-0.360	1.227	1.219
RNF8	0	1.030	-0.670
SWAP70	0	-0.510	0.370	0.653
EXO1	0	0.890	-0.810
EXOSC6	0	1.090	-0.810	-0.397			-1.242	-0.177

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ERCC1	Ubiquitylation	K162	-0.634		_LQSLGK(gl)NFALR_
ERCC1	Ubiquitylation	K243		-0.245	_VTECLTTVK(gl)SVNK_
ERCC1	Ubiquitylation	K281		-1.586	_EDLALCPGLGPQK(gl)AR_
EXO1	Phosphorylation	S598		0.826	_TIS(ph)PPTLGTLR_
MSH2	Ubiquitylation	K212		-0.233	_ECVLPGGETAGDMGK(gl)LR_
MSH2	Ubiquitylation	K249	0.461		_K(gl)GEQMNSAVLPEMENQVAVSSLSAVIK_
MSH2	Ubiquitylation	K347		2.867	_LVNQWIK(gl)QPLMDK_
MSH2	Ubiquitylation	K531	1.040		_VTCKEEK(gl)VLR_
MSH2	Ubiquitylation	K555		0.164	_FTNSK(gl)LTSLNEEYTK_
MSH2	Ubiquitylation	K635		-0.376	_IILK(gl)ASR_
MSH6	Phosphorylation	S41	-0.708	-0.948	_AAAAPGAS(ph)PSPGGDAAWSEAGPGPRPLAR_
MSH6	Phosphorylation	S43	0.319	-0.234	_AAAAPGASPS(ph)PGGDAAWSEAGPGPR_
MSH6	Phosphorylation	S137	0.203	0.359	_VHVQFFDDS(ph)PTR_
MSH6	Phosphorylation	T139	0.209		_VHVQFFDDSPT(ph)R_
MSH6	Phosphorylation	S227	-0.199	-0.192	_SEEDNEIES(ph)EEEVQPK_
MSH6	Ubiquitylation	K334		0.193	_QATSISSETK(gl)NTLR_
MSH6	Ubiquitylation	K476	1.536	0.184	_YSDSLVQK(gl)GYK_
MSH6	Ubiquitylation	K519	2.264	0.186	_IITK(gl)GTQTYSVLEGDPSENYSK_
MSH6	Ubiquitylation	K728	0.082	-0.280	_SGAIFTK(gl)AYQR_
MSH6	Ubiquitylation	K771	-0.582	-1.069	_VDTCHTPFGK(gl)R_
MSH6	Phosphorylation	S830	0.130	1.666	_IHNVGS(ph)PLK_
MSH6	Ubiquitylation	K852		-0.044	_AIMYEETTYSK(gl)K_
MSH6	Ubiquitylation	K853		-0.044	_AIMYEETTYSK(gl)K_
MSH6	Ubiquitylation	K896		-0.342	_QVISLQTK(gl)NPEGR_
MSH6	Ubiquitylation	K997		-0.863	_NLPEEYELK(gl)STK_
MSH6	Ubiquitylation	K1009		-0.817	_YWTK(gl)TIEK_
MSH6	Ubiquitylation	K1030	0.394	-0.156	_DVSLK(gl)DCMR_
MSH6	Ubiquitylation	K1240		-0.672	_ELAETIK(gl)CR_
MSH6	Ubiquitylation	K1291		0.633	_FIK(gl)GACPK_
MSH6	Ubiquitylation	K1296		-1.142	_GACPK(gl)SYGFNAAR_
MSH6	Ubiquitylation	K1315		-1.738	_LANLPEEVIQK(gl)GHR_
MSH6	Ubiquitylation	K1325		-0.190	_EFEK(gl)MNQSLR_
NBN	Phosphorylation	T335		-1.121	_T(ph)TTPGPSLSQGVSVDEK_
NBN	Phosphorylation	S341	3.085		_TTTPGPS(ph)LSQGVSVDEK_
NBN	Phosphorylation	S343	3.710	3.629	_TTTPGPSLS(ph)QGVSVDEK_
NBN	Phosphorylation	S397	2.719	1.458	_MLS(ph)QDAPTVK_
NBN	Phosphorylation	S432	-0.192	-0.395	_IPNYQLS(ph)PTK_
NBN	Phosphorylation	T434	-0.188	-0.683	_IPNYQLSPT(ph)KLPSINK_
NBN	Phosphorylation	S615	1.985	4.691	_IS(ph)QENEIGKK_
RNF168	Phosphorylation	S134		0.945	_RAS(ph)EEEENKASEEYIQR_
RNF168	Ubiquitylation	K227	-1.466	-1.424	_NTGDIQK(gl)YLTPK_
RNF168	Ubiquitylation	K232		-1.889	_YLTPK(gl)SQFGSASHSEAVQEVR_
RNF168	Ubiquitylation	K254	-1.121		_DSVSK(gl)DIDSSDRK_
RNF168	Ubiquitylation	K334	-0.908		_ELCVLSHERPK(gl)TR_
RNF168	Ubiquitylation	K341	-1.460	-1.996	_VPYSK(gl)ETAVMPCGR_
RNF168	Ubiquitylation	K468	-0.810	-1.113	_QK(gl)GSPDEYHLR_
RNF168	Ubiquitylation	K548	-2.498		_VSK(gl)SAHSLQPSISQK_
RNF8	Phosphorylation	S157	-0.377	-0.438	_KFS(ph)LDELAGPGAEGPSNLK_
XRCC4	Ubiquitylation	K178	0.552		_EALETDLYK(gl)R_
XRCC4	Ubiquitylation	K197	0.264		_SLHNK(gl)LLNAAQER_
XRCC4	Phosphorylation	S259	-0.552	1.634	_DDSIIS(ph)SLDVTDIAPSR_
XRCC4	Phosphorylation	S260	-0.545	1.299	_DDSIISS(ph)LDVTDIAPSR_
XRCC4	Phosphorylation	S320	0.439	1.683	_KEHISAENM(ox)S(ph)LETLR_