RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
RPLP0	2	-0.530	0.510	-0.244	0.389	0.676	-0.291	-0.197
RPLP0	2	0.560	-0.870	-0.244	0.389	0.676	-0.291	-0.197
RPLP0	2	-0.530	0.510
RPLP0	2	0.560	-0.870
EBNA1BP2	2	-1.030	1.400				-0.951	0.074
GNL3	2	-0.510	0.440	-0.054	-0.356	-0.419	-0.937	-0.128
RRN3	1	-2.020	3.080	-0.424
RRN3	1	0.540	-0.250	-0.424
ZNHIT6	1	-1.490	2.760	0.145
MDFIC	1	-0.190	-0.070
MDFIC	1	-0.190	-0.070
RSL24D1	1	0.380	-0.540				-0.599
BMS1	1	-1.320	1.300		1.867	1.002	-1.190	-0.112
BMS1	1	-0.170	0.170		1.867	1.002	-1.190	-0.112
TSR1	1	-0.280	0.370	-0.565			2.336	0.012
NOC4L	1	-2.210	4.060	0.806			-0.752	-0.163
LSG1	0	-0.240	-0.240				-0.441	-0.373
MRTO4	0	0.910	-0.680	0.047			-0.760	0.016
NOA1	0	-1.290	1.800		0.622	-0.300	0.329
PES1	0	0.000	0.210				-1.535	-0.358
NHP2L1	0			-0.100	-0.558		0.469	0.546
GTPBP10	0				0.882	0.488	0.260	-0.005
GTPBP4	0	-1.150	1.590		-0.623	-0.725
GTPBP4	0	-1.150	1.590				-0.486	0.142
AATF	0						0.062	0.323
GAR1	0	0.630	-0.790				1.085	0.316
DROSHA	0	-0.480	0.490				-0.227	-0.962
BRIX1	0	-0.650	0.560		-0.447	0.196	-0.204	0.077
RCL1	0	0.160	-0.530		0.626	0.641	-1.430	-0.325
SBDS	0	0.910	-0.950	-0.390			-0.228	0.247
GNL3L	0	-0.060	-0.070
GNL2	0	1.310	-0.820				-0.944	0.037
NAF1	0	1.480	-0.960
MTG1	0	-0.570	1.030
MRPL10	0	-0.410	0.690	1.152	-0.111	-0.180	0.225	0.076
MINA	0	-0.930	1.210	0.120			-0.559	-0.251
RRS1	0	-0.380	-0.480				-0.603	-0.226

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
AATF	Phosphorylation	S203	0.544	0.457	_AGDRNS(ph)EDDGVVMTFSSVK_
AATF	Ubiquitylation	K283		0.128	_ALK(gl)ALLR_
AATF	Ubiquitylation	K475		0.282	_K(gl)TSSLDPNDQVAMGR_
AATF	Ubiquitylation	K496		0.572	_QWLAIQK(gl)LR_
BMS1	Phosphorylation	S552	0.257	0.391	_AGLS(ph)PANCQSDR_
BMS1	Phosphorylation	S625		-0.219	_LSKPSQVSS(ph)GQK_
BMS1	Phosphorylation	T638	-0.006	0.135	_LGPQNFIDET(ph)SDIENLLKEEEDYKEENNDSK_
BMS1	Phosphorylation	S639	-0.006	-0.021	_LGPQNFIDETS(ph)DIENLLKEEEDYKEENNDSK_
BRIX1	Ubiquitylation	K31		-0.411	_RNEIDAEPPAK(gl)R_
BRIX1	Phosphorylation	Y259		-0.428	_IFQGSFGGPTLYENPHY(ph)QSPNM(ox)HR_
BRIX1	Phosphorylation	S261		-0.246	_IFQGSFGGPTLYENPHYQS(ph)PNMHR_
BRIX1	Ubiquitylation	K276		0.684	_SITAAK(gl)YR_
DROSHA	Ubiquitylation	K1341	0.133		_YNFPQM(ox)AHQK(gl)R_
EBNA1BP2	Ubiquitylation	K212	1.539	1.880	_LQTK(gl)QAAMER_
EBNA1BP2	Ubiquitylation	K242	0.951	1.187	_VQTEVLQK(gl)R_
EBNA1BP2	Ubiquitylation	K299	1.080		_YK(gl)NQKFGFGGK_
GNL2	Ubiquitylation	K603	0.122		_ALDEK(gl)IAK_
GNL3	Ubiquitylation	K253	2.576	3.631	_LLGGFQETCSK(gl)AIR_
GNL3L	Ubiquitylation	K208		-2.926	_ASTQHQVK(gl)NLNR_
GNL3L	Ubiquitylation	K226		-1.204	_CSVPVDQASESLLK(gl)SK_
GNL3L	Ubiquitylation	K228		-2.001	_SK(gl)ACFGAENLMR_
GNL3L	Ubiquitylation	K273		-0.737	_SSLINSLK(gl)R_
GTPBP4	Ubiquitylation	K187		0.585	_SSFINK(gl)VTR_
LSG1	Phosphorylation	S271		0.838	_FGHS(ph)SFDQAEISHSESEHLPAR_
LSG1	Phosphorylation	S272		0.838	_FGHS(ph)SFDQAEISHSESEHLPAR_
MDFIC	Phosphorylation	T15		3.004	_PQRVAEAGGGQLGS(ph)T(ph)AQGK_
MDFIC	Ubiquitylation	K95	0.575	-0.592	_LPQLQTSAQVPSGEEIGK(gl)IK_
MDFIC	Ubiquitylation	K97	0.102		_LPQLQTSAQVPSGEEIGKIK(gl)_
MDFIC	Ubiquitylation	K130	-0.043	0.429	_LSAPVSQK(gl)MHR_
MINA	Ubiquitylation	K87	0.470	0.784	_LTDLK(gl)SLCSR_
MRTO4	Ubiquitylation	K163	0.146	-0.240	_QLGLPTALK(gl)R_
MTG1	Ubiquitylation	K280		-0.708	_SVAVK(gl)LGK_
NAF1	Ubiquitylation	K265	0.052	-0.638	_FNSSDHIESK(gl)GIK_
NAF1	Phosphorylation	S315	-0.600	-0.367	_NDQEPPPEALDFS(ph)DDEKEK_
NHP2L1	Ubiquitylation	K13	-1.011	-1.424	_(ac)TEADVNPK(gl)AYPLADAHLTK_
NHP2L1	Ubiquitylation	K24		0.135	_AYPLADAHLTK(gl)K_
NHP2L1	Ubiquitylation	K25	0.099	-0.243	_AYPLADAHLTKK(gl)_
NHP2L1	Ubiquitylation	K37	0.517	0.880	_LLDLVQQSCNYK(gl)QLR_
NHP2L1	Ubiquitylation	K41	-0.526	-0.216	_K(gl)GANEATK(gl)TLNR_
NHP2L1	Ubiquitylation	K48	-0.393	-0.294	_K(gl)GANEATK(gl)TLNR_
NHP2L1	Ubiquitylation	K117	-0.068		_EGSQLK(gl)QQIQSIQQSIER_
NOC4L	Ubiquitylation	K138	0.205		_SK(gl)WEGNYLFPR_
NOC4L	Ubiquitylation	K232		-0.716	_REPTVSSFYVK(gl)R_
PES1	Ubiquitylation	K98		-0.002	_AYGK(gl)SEWNTVER_
PES1	Ubiquitylation	K533	0.504	1.270	_LAQEEESEAK(gl)R_
RPLP0	Ubiquitylation	K10	0.644	0.520	_ATWK(gl)SNYFLK_
RPLP0	Ubiquitylation	K26	-0.288		_IIQLLDDYPK(gl)CFIVGADNVGSK_
RPLP0	Ubiquitylation	K38	1.114	0.477	_CFIVGADNVGSK(gl)QM(ox)QQIR_
RPLP0	Ubiquitylation	K50	2.179	2.607	_GK(gl)AVVLMGK_
RPLP0	Ubiquitylation	K106	0.172	0.883	_DM(ox)LLANK(gl)VPAAAR_
RPLP0	Phosphorylation	S304	0.606	1.054	_VEAKEES(ph)EES(ph)DEDMGFGLFD_
RPLP0	Phosphorylation	S307	0.606	0.881	_VEAKEES(ph)EES(ph)DEDMGFGLFD_
RSL24D1	Ubiquitylation	K27	1.733	1.417	_NDCK(gl)VFR_
RSL24D1	Ubiquitylation	K73	1.578		_ELTVDNSFEFEK(gl)R_
RSL24D1	Ubiquitylation	K80	1.675	0.899	_NEPIK(gl)YQR_
RSL24D1	Ubiquitylation	K94		1.287	_TIDAMK(gl)R_
RSL24D1	Ubiquitylation	K125		-0.265	_VQDIK(gl)EVK_
SBDS	Phosphorylation	T5		-1.684	_(ac)SIFT(ph)PTNQIR_
SBDS	Ubiquitylation	K35	0.900		_RFEIACYKNK(gl)_
SBDS	Ubiquitylation	K90	0.641		_QILTK(gl)GEVQVSDKER_
SBDS	Ubiquitylation	K118	-0.751		_DIATIVADK(gl)CVNPETK_
SBDS	Ubiquitylation	K138	1.026		_AMK(gl)DIHYSVK_
SBDS	Ubiquitylation	K151	0.552		_STK(gl)QQALEVIK_
SBDS	Ubiquitylation	K159	0.900		_QQALEVIK(gl)QLK_
SBDS	Ubiquitylation	K226	1.011		_EIDELIKK(gl)_
TSR1	Ubiquitylation	K38	1.357		_LALK(gl)TLSK_
TSR1	Ubiquitylation	K72	0.299	0.937	_EAVLAEK(gl)R_
TSR1	Ubiquitylation	K771		-1.356	_SQDTVLMNLYK(gl)R_
ZNHIT6	Phosphorylation	S17	0.113		_SGGGLHS(ph)VAEGVRLSPEPGR_
ZNHIT6	Phosphorylation	S25	0.262	0.119	_SGGGLHSVAEGVRLS(ph)PEPGR_
ZNHIT6	Ubiquitylation	K246		-1.854	_YSCSLPCVK(gl)K_
ZNHIT6	Ubiquitylation	K247	-0.492	-1.786	_YSCSLPCVKK(gl)_
ZNHIT6	Ubiquitylation	K298	-0.442	-1.729	_DAFLK(gl)RPISNK_
ZNHIT6	Ubiquitylation	K362		-2.205	_LQFPQSQAEYIEK(gl)R_