RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
AP3B1	1			0.283			0.568	0.447
MYO6	1	-1.580	2.560	0.037			0.700	0.607
MYO6	1	-1.580	2.560		-0.533
VAMP3	0	-0.800	0.690				0.418
VAMP3	0	-0.800	0.690
AP1M1	0	-0.550	0.780				-0.171	-0.095
AP1M1	0	-0.550	0.780	0.192
AP1B1	0	-0.890	1.670
AP1B1	0	-0.890	1.670	-0.267	0.203	0.287	0.311	0.233
AP1B1	0	-0.890	1.670				-1.575	-0.671
AP1B1	0	-0.890	1.670	0.931	0.543	0.034	0.611	0.276
DENND1A	0	-0.530	0.180
HIP1R	0	-0.280	1.350					0.541
DBNL	0	0.940	-0.940	0.425
DBNL	0	1.040	-0.600	0.425
DBNL	0	0.940	-0.940	0.111			0.457	0.226
DBNL	0	1.040	-0.600	0.111			0.457	0.226
DAB2	0	0.510	-0.470
AP1G1	0	-0.070	-0.460	-0.071			0.366	0.385

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
AP1B1	Ubiquitylation	K5	0.232	0.554	_(ac)TDSK(gl)YFTTTK_
AP1B1	Ubiquitylation	K12	0.255		_K(gl)GEIFELK_
AP1B1	Ubiquitylation	K117	-0.547		_VDK(gl)ITEYLCEPLRK_
AP1B1	Ubiquitylation	K131	0.324	-0.027	_CLK(gl)DEDPYVRK_
AP1B1	Ubiquitylation	K860		-2.206	_LQSSNIFTVAK(gl)R_
AP1B1	Ubiquitylation	K899	-0.222	-0.751	_IQPGNPSCTLSLK(gl)CR_
AP1G1	Ubiquitylation	K385	1.119	0.748	_DLDVSIK(gl)R_
AP1G1	Ubiquitylation	K595	-0.570	-0.014	_AVEYNALFKK(gl)_
AP1M1	Ubiquitylation	K43		-0.691	_(ac)SASAVYVLDLK(gl)GK_
AP1M1	Ubiquitylation	K45		-0.691	_(ac)SASAVYVLDLK(gl)GK_
AP1M1	Ubiquitylation	K272	-0.542		_SK(gl)SVELEDVK_
AP1M1	Ubiquitylation	K280		-0.292	_SVELEDVK(gl)FHQCVR_
AP1M1	Ubiquitylation	K369	0.791	0.647	_FK(gl)TTVGSVK_
AP3B1	Ubiquitylation	K74		3.486	_IVGM(ox)IAKGK(gl)_
AP3B1	Phosphorylation	S276	0.667	0.762	_NFYES(ph)DDDQKEK_
DAB2	Phosphorylation	S401	-0.704	-0.722	_SSPNPFVGS(ph)PPK_
DBNL	Ubiquitylation	K144	0.756		_ASGANYSFHK(gl)ESGR_
DBNL	Ubiquitylation	K164	-0.807	0.448	_FQDVGPQAPVGSVYQK(gl)TNAVSEIKR_
DBNL	Ubiquitylation	K172	-0.071		_TNAVSEIK(gl)R_
DBNL	Phosphorylation	S232		-0.858	_YQEQGGEAS(ph)PQR_
DBNL	Phosphorylation	S269	-0.006	-0.553	_AM(ox)S(ph)TTSISSPQPGK_
DBNL	Phosphorylation	S272	-0.752	-0.377	_AMS(ph)TTS(ph)ISSPQPGK_
DBNL	Phosphorylation	S274	-0.547	-0.544	_AM(ox)STTSIS(ph)SPQPGK_
DBNL	Phosphorylation	S275	-0.547	0.433	_AMSTTSISS(ph)PQPGK_
DBNL	Ubiquitylation	K280	0.113		_AMSTTSISSPQPGK(gl)LR_
DBNL	Phosphorylation	S283	-0.388	0.222	_LRS(ph)PFLQK_
DBNL	Phosphorylation	T291	0.823	-0.150	_QLT(ph)QPETHFGR_
DENND1A	Phosphorylation	S399	-0.061		_ES(ph)DSAEGDEAESPEQQVR_
DENND1A	Phosphorylation	S409	0.126	0.405	_ESDSAEGDEAES(ph)PEQQVR_
DENND1A	Phosphorylation	S455	-0.067	0.594	_S(ph)LEDLRAPK_
DENND1A	Phosphorylation	S519		-0.933	_LWSLGQDDMAIPSKPPAAS(ph)PEKPSALLGNSLALPR_
DENND1A	Phosphorylation	T570	-1.565	-1.192	_KT(ph)PELGIVPPPPIPR_
HIP1R	Ubiquitylation	K5	-0.561	-0.282	_(ac)MNSIK(gl)NVPAR_
MYO6	Phosphorylation	S266		0.008	_LHLS(ph)SPDNFR_
MYO6	Phosphorylation	S267	-0.106	0.501	_LHLSS(ph)PDNFR_
MYO6	Ubiquitylation	K285	0.079		_YFANK(gl)ETDKQILQNR_
MYO6	Ubiquitylation	K408	0.078		_GTVIK(gl)VPLKVEQANNAR_
MYO6	Ubiquitylation	K634	0.366		_ELFESSTNNNKDTKQK(gl)_
MYO6	Ubiquitylation	K993	-0.079	1.133	_QK(gl)EEESQQQAVLEQERR_
MYO6	Ubiquitylation	K1053		-1.790	_NDGTRPK(gl)MTPEQMAK_
MYO6	Ubiquitylation	K1077	-0.135	0.805	_GPAVLATK(gl)AAAGTK_
MYO6	Ubiquitylation	K1089	0.440	1.326	_YDLSK(gl)WK_
MYO6	Ubiquitylation	K1120	0.732	0.435	_LK(gl)VYHAWK_
MYO6	Ubiquitylation	K1126	0.296		_VYHAWK(gl)SK_
MYO6	Ubiquitylation	K1142	-1.182	-0.570	_NTETEQRAPK(gl)SVTDYAQQNPAAQIPAR_
MYO6	Ubiquitylation	K1184	-1.200	-0.624	_IPFIRPADQYK(gl)DPQSK_
VAMP3	Phosphorylation	T9	0.318	-0.040	_(ac)STGPTAAT(ph)GSNR_
VAMP3	Phosphorylation	S11	0.474	0.952	_(ac)STGPTAATGS(ph)NR_
VAMP3	Ubiquitylation	K54	0.408	0.792	_VNVDK(gl)VLER_
VAMP3	Phosphorylation	S58	-0.407	0.612	_ADALQAGAS(ph)QFETSAAK_
VAMP3	Ubiquitylation	K61	0.558	0.387	_VLERDQK(gl)LSELDDR_
VAMP3	Phosphorylation	S63		0.374	_ADALQAGASQFETS(ph)AAK_