RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
CLN6	1	0.190	-0.280
LAMTOR1	1	0.700	-0.850	0.343			0.382
AKTIP	1	-1.660	2.970
HEXB	0	-0.370	0.060				0.103
CHMP5	0	0.050	0.130
HPS4	0	0.980	-0.680
VPS18	0	-0.130	-0.260				-0.775	-0.482
NAGLU	0	-0.400	0.020
TFEB	0	0.270	0.450
BECN1	0	0.080	-0.010
PPT1	0	1.320	-0.730
ACP2	0	1.070	-0.530				0.434	0.627
HOOK1	0	1.180	-1.060
LYST	0	-0.570	0.210
TPP1	0	-0.540	0.760	0.431			1.429	1.399
ZKSCAN3	0	-0.120	0.260

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ACP2	Ubiquitylation	K153		-2.937	_LLK(gl)FPLGPCPR_
AKTIP	Phosphorylation	T29	0.157		_TLTGDVKT(ph)SPPR_
AKTIP	Phosphorylation	S30	0.157	0.228	_TLTGDVKTS(ph)PPR_
BECN1	Ubiquitylation	K237		-0.057	_EYSEFK(gl)R_
BECN1	Ubiquitylation	K324		0.066	_MGLK(gl)FQR_
CHMP5	Ubiquitylation	K110	1.116	0.375	_TTVDAMK(gl)LGVK_
CLN6	Phosphorylation	S63	1.677	1.381	_HGS(ph)VSADEAAR_
HOOK1	Ubiquitylation	K424	-0.352		_DTLK(gl)ETNEELR_
HOOK1	Ubiquitylation	K612		-0.788	_MYLEK(gl)AR_
HOOK1	Ubiquitylation	K678		0.231	_SLAFQK(gl)LGMESR_
HOOK1	Phosphorylation	S719	-0.815	-0.265	_NLS(ph)VKVPATTSD_
HPS4	Phosphorylation	S272		0.478	_SLAS(ph)PAGLQDGSAQHHPK_
LAMTOR1	Ubiquitylation	K20	-0.365	-0.474	_K(gl)LLLDPSSPPTK_
LAMTOR1	Phosphorylation	S27	-0.440	-0.557	_KLLLDPSS(ph)PPTK_
LAMTOR1	Ubiquitylation	K31	-1.467		_KLLLDPSSPPTK(gl)ALNGAEPNYHSLPSAR_
LYST	Phosphorylation	S2124	0.490	0.108	_LTGS(ph)LGCSIDR_
NAGLU	Ubiquitylation	K59		-0.842	_ALAAK(gl)PGLDTYSLGGGGAAR_
PPT1	Ubiquitylation	K174		-0.445	_TLNAGAYSK(gl)VVQER_
PPT1	Ubiquitylation	K224		1.077	_NLMALKK(gl)_
PPT1	Ubiquitylation	K253		0.222	_SGQAK(gl)ETIPLQETSLYTQDR_
TFEB	Phosphorylation	S541		-0.724	_KDLDLMLLDDSLLPLASDPLLSTMS(ph)PEASK_
TFEB	Phosphorylation	S555	0.499	0.811	_RSSFS(ph)MEEGDVL_
VPS18	Ubiquitylation	K46		-1.029	_EVPIFTK(gl)QR_
ZKSCAN3	Phosphorylation	S42		0.848	_VEEEEAGFPSSPDLGS(ph)EGSR_