RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
EPB41	2	0.960	-0.670	0.965	-0.443	-0.532	0.843	0.638
EPB41	2	0.960	-0.670
ZFYVE16	1	-1.080	1.970
EEA1	1	1.570	-0.620	1.098			0.020	0.177
PLEKHA3	1	2.400	-1.300
MCF2L	1	2.560	-1.220
SCIN	0	-0.210	-0.400	0.401	-0.552	0.163
PLEKHA5	0	0.490	-0.530				0.253	0.609
SNAP91	0						0.221	0.666
SCARB1	0	0.990	-0.330
SCARB1	0	0.990	-0.330				-0.012	-0.480
PICALM	0	0.890	-0.980				0.221	0.666
PICALM	0	0.890	-0.980
SNX9	0			0.301	1.109	0.556	0.141	0.127
PIK3R1	0	1.910	-1.220				-0.441	0.147
ZFYVE9	0	-0.930	0.760
WDFY3	0	0.300	-0.760

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
EEA1	Ubiquitylation	K100	0.234	1.002	_QEVQDLQASLK(gl)EEK_
EEA1	Ubiquitylation	K103	-0.344		_QEVQDLQASLKEEK(gl)_
EEA1	Phosphorylation	S354	1.047	1.214	_LS(ph)ASETSLHR_
EEA1	Ubiquitylation	K1029		1.686	_SQETFK(gl)QLQSDFYGR_
EEA1	Ubiquitylation	K1162	0.355		_EITNLK(gl)DAK_
EEA1	Ubiquitylation	K1178	-1.915		_LELQGK(gl)ADSLK_
EEA1	Ubiquitylation	K1225	-1.291		_LHSEIKEK(gl)_
EEA1	Ubiquitylation	K1312	-0.851		_LQTK(gl)VLELQR_
EPB41	Phosphorylation	S95	2.058	1.653	_SQVS(ph)EEEGKEVESDKEK_
EPB41	Phosphorylation	S188	0.343	0.603	_IEVKEES(ph)PQSK_
EPB41	Phosphorylation	S191		0.304	_IEVKEESPQS(ph)K_
EPB41	Ubiquitylation	K198	0.148		_AETELK(gl)ASQKPIRK_
EPB41	Ubiquitylation	K237	1.265	1.069	_GQDLLK(gl)R_
EPB41	Ubiquitylation	K361	0.451		_LAPNQTK(gl)ELEEK_
EPB41	Ubiquitylation	K366	0.532		_ELEEK(gl)VMELHK_
EPB41	Ubiquitylation	K372	0.922		_VMELHK(gl)SYR_
EPB41	Ubiquitylation	K499	-0.476		_SK(gl)FLALGSK_
EPB41	Phosphorylation	S542	0.751	0.712	_S(ph)LDGAAAVDSADR_
EPB41	Phosphorylation	S551	-0.139		_SLDGAAAVDS(ph)ADRSPRPTSAPAITQGQVAEGGVLDASAK_
EPB41	Phosphorylation	S555	-0.200	-1.109	_SLDGAAAVDSADRS(ph)PRPTSAPAITQGQVAEGGVLDASAK_
EPB41	Phosphorylation	S560	-0.232	0.037	_SPRPTS(ph)APAITQGQVAEGGVLDASAK_
EPB41	Phosphorylation	S709		0.307	_RLS(ph)THSPFR_
EPB41	Phosphorylation	S712	-0.493	0.130	_LSTHS(ph)PFR_
EPB41	Ubiquitylation	K1061	0.496		_EAK(gl)EQHPDMSVTK_
MCF2L	Phosphorylation	S90	-0.968	-0.792	_ALEQSQS(ph)LPLPAPT(ph)STSPSR_
MCF2L	Phosphorylation	S100	-0.927	-0.748	_ALEQSQSLPLPAPTSTS(ph)PSR_
PICALM	Ubiquitylation	K210	-0.364	0.811	_YLNEK(gl)AVSYR_
PICALM	Phosphorylation	T294		-0.800	_KPHTSLT(ph)TAASPVSTSAGGIM(ox)TAPAIDIFSTPSSSNSTSK_
PLEKHA3	Phosphorylation	S244	0.713	-0.219	_TYS(ph)DTDSCSDIPLEDPDRPVHCSK_
PLEKHA5	Phosphorylation	S416	0.574	0.822	_TNS(ph)MQQLEQWIK_
PLEKHA5	Phosphorylation	S1021	0.302	0.454	_AKS(ph)PTPESSTIASYVTLR_
PLEKHA5	Phosphorylation	T1023	0.244	0.270	_AKSPT(ph)PESSTIASYVTLR_
SCARB1	Ubiquitylation	K480	0.325	0.520	_GSVLQEAK(gl)L_
SCIN	Ubiquitylation	K116	0.485		_ELQGYESNDFVSYFKGGLK(gl)_
SCIN	Ubiquitylation	K369	-1.683		_VAQIK(gl)QIPFDASK_
SNAP91	Ubiquitylation	K210	-0.364	0.811	_YLNEK(gl)AVSYR_
SNX9	Ubiquitylation	K179		0.445	_SSSYFK(gl)DSESADAGGAQR_
SNX9	Phosphorylation	S198		0.523	_ASS(ph)SSMKIPLNK_
WDFY3	Phosphorylation	S817		-0.379	_HAYHSVS(ph)TPPVYPPK_
WDFY3	Phosphorylation	T818		-0.744	_HAYHSVST(ph)PPVYPPK_
WDFY3	Ubiquitylation	K957		-1.297	_LASPLNCGAWDK(gl)K_
WDFY3	Ubiquitylation	K958		-1.297	_LASPLNCGAWDK(gl)K_
WDFY3	Ubiquitylation	K1010		-0.942	_SLVK(gl)SAEGSTVPLTR_
ZFYVE16	Ubiquitylation	K86	-0.638		_TLK(gl)GLTSIQNEK_
ZFYVE16	Ubiquitylation	K455	-1.793		_K(gl)IDPDQTVIR_
ZFYVE16	Phosphorylation	S939	1.491	1.197	_NEIIQS(ph)PISQVPSVEK_
ZFYVE16	Ubiquitylation	K1202	-2.966	3.670	_LGAEYK(gl)AYPAPLTSIR_
ZFYVE16	Ubiquitylation	K1257	0.166	0.179	_SCIK(gl)IPR_
ZFYVE16	Ubiquitylation	K1364	-0.812		_LALREQK(gl)DFK_
ZFYVE16	Ubiquitylation	K1367	-1.498		_DFK(gl)ITCGK_
ZFYVE16	Ubiquitylation	K1372		0.291	_ITCGK(gl)VDAVDLR_
ZFYVE9	Ubiquitylation	K543	1.139		_GNEATEGSGLLLNSTGDLMK(gl)K_
ZFYVE9	Ubiquitylation	K544	1.139		_GNEATEGSGLLLNSTGDLMK(gl)K_
ZFYVE9	Ubiquitylation	K622	0.886		_NKNDILGKAK(gl)_