RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
SMARCB1	1	0.850	-0.060	0.041	-0.003	0.699	0.354	-0.731
SMARCB1	1	0.850	-0.060		0.738	1.594
ARID1A	1	0.360	-0.350	0.683	0.272	0.870	-0.131	0.043
HDAC2	1	-2.390	4.970
HDAC2	1	-2.390	4.970	0.187	-0.007	0.825
SMARCD1	0	-0.920	1.120
SMARCD1	0	-0.920	1.120	0.284	0.336	0.686	0.169	0.388
SMARCE1	0	-0.270	0.280	0.341
SMARCE1	0	-0.270	0.280		0.251	0.796	0.284	0.349
PRMT5	0	0.330	-0.190				-0.234	0.169
PRMT5	0	0.330	-0.190	0.437	-0.333	-0.138
SMARCA4	0	-0.810	1.520	0.629	-0.158	0.141	0.337	0.333
ACTL6A	0	1.180	-1.200	-0.232	-0.204	0.672	-0.015	0.126
SMARCC2	0	-0.770	0.630
SMARCC2	0	-0.770	0.630	0.151	0.139	0.622	0.709	0.505
SIN3A	0	-0.610	0.780	0.378	-0.208	0.304	-0.168	0.410
SMARCC1	0	0.140	0.090	0.553	0.112	0.584	0.137	0.136

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ACTL6A	Phosphorylation	S233		0.000	_EGS(ph)PANWK_
ACTL6A	Ubiquitylation	K238		-0.635	_EGSPANWK(gl)R_
ACTL6A	Ubiquitylation	K242		-0.676	_EK(gl)LPQVTR_
ACTL6A	Ubiquitylation	K371		-0.788	_ELSQK(gl)TPPSMR_
ACTL6A	Ubiquitylation	K379	0.076	-0.470	_LK(gl)LIANNTTVER_
ARID1A	Phosphorylation	S363	0.211	0.022	_SHHAPM(ox)S(ph)PGSSGGGGQPLAR_
ARID1A	Phosphorylation	S367	-0.142		_SHHAPMSPGSS(ph)GGGGQPLAR_
ARID1A	Phosphorylation	S381		0.335	_TPQPS(ph)SPMDQMGK_
ARID1A	Phosphorylation	S382	1.506	0.780	_TPQPSS(ph)PMDQMGK_
ARID1A	Phosphorylation	S696	-0.934	-0.737	_GPS(ph)PSPVGSPASVAQSR_
ARID1A	Phosphorylation	S702	0.267	-0.175	_GPS(ph)PSPVGS(ph)PASVAQSR_
ARID1A	Phosphorylation	S705	0.157		_GPS(ph)PSPVGSPAS(ph)VAQSR_
ARID1A	Phosphorylation	S772	-0.112	-0.485	_NPQMPQYSSPQPGSALS(ph)PR_
ARID1A	Phosphorylation	S1182	1.584	1.063	_S(ph)NSVGIQDAFNDGSDSTFQK_
ARID1A	Phosphorylation	S1184	1.732	1.114	_SNS(ph)VGIQDAFNDGSDSTFQK_
ARID1A	Phosphorylation	S1754	0.131	-0.654	_VS(ph)SPAPM(ox)EGGEEEEELLGPK_
ARID1A	Phosphorylation	S1755	-0.409	-0.587	_VSS(ph)PAPMEGGEEEEELLGPK_
ARID1A	Phosphorylation	S1944		-0.489	_FPFGIS(ph)PAQSHR_
HDAC2	Ubiquitylation	K50	0.036		_K(gl)MEIYRPHK_
HDAC2	Ubiquitylation	K67		-0.467	_ATAEEMTK(gl)YHSDEYIK_
HDAC2	Ubiquitylation	K89	0.749	-0.241	_SIRPDNMSEYSK(gl)QMQR_
HDAC2	Ubiquitylation	K284	0.749		_GHAK(gl)CVEVVK_
HDAC2	Phosphorylation	S394	-0.865	-0.997	_M(ox)LPHAPGVQM(ox)QAIPEDAVHEDS(ph)GDEDGEDPDKR_
HDAC2	Phosphorylation	S422	0.482	0.781	_IACDEEFS(ph)DSEDEGEGGR_
PRMT5	Ubiquitylation	K60	-1.551	-1.863	_EFIQEPAK(gl)NRPGPQTR_
PRMT5	Ubiquitylation	K95	0.070	-1.206	_LSPWIRPDSK(gl)VEK_
PRMT5	Ubiquitylation	K200	0.125	0.439	_TLCDYSK(gl)R_
PRMT5	Ubiquitylation	K240	-1.218		_AAILPTSIFLTNK(gl)K_
PRMT5	Ubiquitylation	K241	-1.002		_AAILPTSIFLTNKK(gl)_
PRMT5	Ubiquitylation	K387		0.290	_IK(gl)LYAVEK_
SIN3A	Ubiquitylation	K155	0.182		_EFK(gl)SQSIDTPGVISR_
SIN3A	Phosphorylation	T266		-0.572	_VSKPSQLQAHTPASQQT(ph)PPLPPYASPR_
SIN3A	Phosphorylation	S277		-1.598	_S(ph)PPVQPHTPVTISLGTAPSLQNNQPVEFNHAINYVNK_
SIN3A	Phosphorylation	S295		-1.959	_SPPVQPHTPVTISLGTAPS(ph)LQNNQPVEFNHAINYVNK_
SIN3A	Ubiquitylation	K638		-0.223	_VLEAIQK(gl)K_
SIN3A	Ubiquitylation	K639		-0.223	_VLEAIQK(gl)K_
SIN3A	Ubiquitylation	K715	1.012		_GFNK(gl)VWR_
SIN3A	Phosphorylation	S832	0.764	0.363	_GDLS(ph)DVEEEEEEEM(ox)DVDEATGAVKK_
SIN3A	Ubiquitylation	K875	0.131	0.003	_LLFSNTAAQK(gl)LR_
SIN3A	Ubiquitylation	K937	-0.224	-0.025	_DK(gl)SDSPAIQLR_
SIN3A	Phosphorylation	S940		-0.107	_DKSDS(ph)PAIQLR_
SIN3A	Phosphorylation	T1111	0.691	0.517	_YM(ox)NSDTT(ph)SPELR_
SIN3A	Phosphorylation	S1112	0.623	0.725	_YM(ox)NSDTTS(ph)PELR_
SMARCA4	Ubiquitylation	K357	-0.934		_ITPIQK(gl)PR_
SMARCA4	Ubiquitylation	K405	0.109	1.148	_ATIELK(gl)ALR_
SMARCA4	Ubiquitylation	K437	-0.317		_DTALETALNAK(gl)AYKR_
SMARCA4	Ubiquitylation	K455	0.225		_ITEK(gl)LEK_
SMARCA4	Ubiquitylation	K496		0.923	_SVTGK(gl)IQK_
SMARCA4	Phosphorylation	S677	-0.880	-0.324	_KAENAEGQTPAIGPDGEPLDETSQMS(ph)DLPVK_
SMARCA4	Ubiquitylation	K1283	0.125		_ILAAAK(gl)YK_
SMARCA4	Phosphorylation	S1413	-0.265	0.515	_EVDYSDS(ph)LTEK_
SMARCA4	Phosphorylation	S1486	-0.713	-0.935	_LS(ph)PNPPNLTK_
SMARCB1	Ubiquitylation	K13	0.411	-0.949	_TFGQK(gl)PVK_
SMARCB1	Ubiquitylation	K208		-0.170	_LDMEIDGQK(gl)LR_
SMARCC1	Phosphorylation	S310	-0.047	0.123	_NEEPVRS(ph)PERR_
SMARCC1	Phosphorylation	S328	-0.755	-0.358	_KHS(ph)PS(ph)PPPPTPTESR_
SMARCC1	Phosphorylation	S330	-0.755	-1.491	_KHS(ph)PS(ph)PPPPTPTESR_
SMARCC1	Ubiquitylation	K588	-0.831		_SPQVPAAQQMLNFPEK(gl)NK_
SMARCC1	Ubiquitylation	K590	-0.737		_NK(gl)EKPVDLQNFGLR_
SMARCC1	Ubiquitylation	K592	-0.509		_EK(gl)PVDLQNFGLR_
SMARCC1	Ubiquitylation	K608	-0.342	0.588	_TDIYSK(gl)K_
SMARCC1	Ubiquitylation	K609	-0.053	0.520	_TDIYSKK(gl)_
SMARCC1	Ubiquitylation	K716	0.001		_VASAAAK(gl)AALEEFSR_
SMARCC1	Ubiquitylation	K882	0.402		_AK(gl)HLAAVEER_
SMARCC2	Ubiquitylation	K161	-0.199		_LKDIIK(gl)R_
SMARCC2	Phosphorylation	S283	0.602	0.869	_TLTDEVNS(ph)PDSDRR_
SMARCC2	Phosphorylation	S302	-0.755	-0.668	_RS(ph)PSPSPTPEAK_
SMARCC2	Phosphorylation	S347	-0.627	-0.862	_DMDEPS(ph)PVPNVEEVTLPK_
SMARCC2	Ubiquitylation	K455	-0.775		_ALPEFFNGKNK(gl)_
SMARCC2	Ubiquitylation	K694	0.389		_VASAAAK(gl)SALEEFSK_
SMARCC2	Ubiquitylation	K872	-0.712		_DIGEGNLSTAAAAALAAAAVK(gl)AK_
SMARCC2	Ubiquitylation	K874	0.402		_AK(gl)HLAAVEER_
SMARCC2	Ubiquitylation	K902	0.641	0.460	_KLEIK(gl)LR_
SMARCD1	Ubiquitylation	K156		-0.309	_K(gl)LDQTIMR_
SMARCD1	Ubiquitylation	K182		-1.309	_SALSK(gl)YDATK_
SMARCD1	Ubiquitylation	K223	0.456	0.835	_LLEDSALSK(gl)YDATK_
SMARCD1	Ubiquitylation	K273		-1.081	_TATTQETDGFQVK(gl)RPGDVNVR_
SMARCD1	Ubiquitylation	K464	-0.278	-0.878	_DLK(gl)TMTDVVGNPEEERR_
SMARCD1	Ubiquitylation	K498		-0.671	_YFYSK(gl)VQQR_
SMARCE1	Ubiquitylation	K92	0.706		_ASNPDLK(gl)LWEIGK_
SMARCE1	Ubiquitylation	K271	-0.418	-0.010	_FLESTDSFNNELK(gl)R_