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Query: SMARCD1

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
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[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
SMARCD1 0 3.252 -0.920 1.120
SMARCD1 0 3.252 -0.920 1.120 0.284 0.336 0.686 0.169 0.388

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
SMARCD1 Ubiquitylation K223 0.456 0.835 _LLEDSALSK(gl)YDATK_
SMARCD1 Ubiquitylation K156 -0.309 _K(gl)LDQTIMR_
SMARCD1 Ubiquitylation K498 -0.671 _YFYSK(gl)VQQR_
SMARCD1 Ubiquitylation K464 -0.278 -0.878 _DLK(gl)TMTDVVGNPEEERR_
SMARCD1 Ubiquitylation K273 -1.081 _TATTQETDGFQVK(gl)RPGDVNVR_
SMARCD1 Ubiquitylation K182 -1.309 _SALSK(gl)YDATK_

Background Information for SMARCD1:


Pubmed-SMARCD1 »
Uniprot-SMARCD1 »
Biogrid-SMARCD1 »
ProteomicsDB-SMARCD1 »

Tumorportal-SMARCD1 »
COSMIC-SMARCD1 »
GenomeRNAi-SMARCD1 »
Genecards-SMARCD1


Protein-protein Interactions for SMARCD1
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait ESPN Cat. description Hein, Mann, Cell 2015
Category members IP bait KIFC1 Cat. description Hein, Mann, Cell 2015
Category members IP bait SMARCC1 Cat. description Hein, Mann, Cell 2015
Category members IP bait ACTBL2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait BCL7A Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait BCL7C Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait DPF2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait DPF3 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait NUP50 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait RELB Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait SMARCD1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait SMARCE1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait SS18 Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in SMARCD1
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members SWIB_MDM2_domain IPR003121 0.6
Category members SWIB_domain IPR019835 0.6


Protein complexes (CORUM database) featuring SMARCD1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members Corum 739 SIN3-ING1b complex II Database 4.24
Category members Corum 714 BRM-SIN3A complex Database 4.02
Category members Corum 1230 WINAC complex Database 3.79
Category members Corum 713 BRG1-SIN3A complex Database 3.51
Category members Corum 1252 EBAFa complex Database 2.5
Category members Corum 806 BRM-SIN3A-HDAC complex Database 2.48
Category members Corum 1237 BAF complex Database 2.03
Category members Corum 555 BAF complex Database 2.03
Category members Corum 803 BRG1-SIN3A-HDAC containing SWI/SNF remodeling complex I Database 2.01
Category members Corum 1239 EBAFb complex Database 1.57
Category members Corum 1251 BAF complex Database 1.57
Category members Corum 554 PBAF complex (Polybromo- and BAF containing complex) Database 1.57
Category members Corum 808 BRM-associated complex Database 1.57
Category members Corum 149 PBAF complex (Polybromo- and BAF containing complex) Database 1.36
Category members Corum 189 BAF complex Database 1.36
Category members Corum 1238 PBAF complex (Polybromo- and BAF containing complex) Database 1.16
Category members Corum 556 PBAF complex (Polybromo- and BAF containing complex) Database 1.16
Category members Corum 807 BRG1-associated complex Database 1.16
Category members Corum 86 NUMAC complex (nucleosomal methylation activator complex) Database 0.83


Categories featuring SMARCD1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0006338 chromatin remodeling Database 4.95
Category members GO Category GO:0003713 transcription coactivator activity Database 3.68
Category members GO Category GO:0006337 nucleosome disassembly Database 3
Category members GO Category GO:0016514 SWI/SNF complex Database 2.12
Category members GO Category GO:0032947 protein complex scaffold Database 0.82
Category members GO Category GO:0048096 chromatin-mediated maintenance of transcription Database 0.6
Category members Pathway Pathway_45 PID_REG_GR_PATHWAY 0 0.31
Category members GO Category GO:0006357 regulation of transcription from RNA polymerase II promoter Database 0.19
Category members GO Category GO:0007399 nervous system development Database 0


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