RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
HSP90AA1	3	-0.150	0.150	0.395	1.024	-1.280	0.611	0.460
HSP90AA1	3	0.170	-0.420	0.395	1.024	-1.280	0.611	0.460
JUN	3	-0.930	0.930			-0.126
FKBP4	2	0.540	-0.110	0.084			0.155	0.235
GSK3B	2	1.020	-0.870				-1.128	1.091
FKBP5	2	0.980	-0.750	-0.563
PCK2	2	0.680	-0.790	-0.618	1.207	-2.619	1.882	1.706
MAPK14	2	-0.160	-0.350
POU2F1	2	-0.480	0.830
PBX2	2	-0.170	0.670	-0.186		-0.124
MAPK9	1	0.110	-0.490
HDAC1	1	-1.980	4.450
HDAC1	1	-1.980	4.450	-0.122	0.307	0.969	0.094	0.191
NCOA2	1	-0.210	-0.230
HDAC2	1	-2.390	4.970
HDAC2	1	-2.390	4.970	0.187	-0.007	0.825
CREBBP	0	0.840	-0.950				-3.889	-1.071
PPP5C	0	-0.140	-0.230	0.937
PPP5C	0	-0.140	-0.230
SMARCD1	0	-0.920	1.120
SMARCD1	0	-0.920	1.120	0.284	0.336	0.686	0.169	0.388
PRKACA	0	0.380	-0.680		-1.005	-0.697	0.234	0.487
TSG101	0	0.060	-0.480
NCOA1	0	1.240	-0.460
BAX	0	1.590	-1.170				0.811	0.359
EP300	0	-1.210	1.320	-1.089			-1.694	-0.723
MAPK3	0
GATA3	0	0.000	-0.660
NFKB1	0	0.720	-0.810
TBP	0	1.610	-1.170	-0.831
NR3C1	0	0.390	-0.260
STAT1	0	-0.550	0.170
CREB1	0	1.080	-0.800			-1.027
CDKN1A	0	1.080	-0.750
SMARCA4	0	-0.810	1.520	0.629	-0.158	0.141	0.337	0.333
YWHAH	0	0.000	0.080		1.206	0.159
YWHAH	0	0.000	0.080	0.546			0.338	0.541
MDM2	0	-0.210	0.080
SMARCC2	0	-0.770	0.630
SMARCC2	0	-0.770	0.630	0.151	0.139	0.622	0.709	0.505
TP53	0	-1.070	1.050	-2.808	0.076	-0.094	0.436	0.497
AKT1	0	-0.050	0.700
AKT1	0	0.860	-0.040
PRKACB	0	1.740	-1.200		-1.064
PRKACB	0	1.740	-1.200		-1.005	-0.697	0.234	0.487
CDK5	0	-1.100	1.740	-0.236			1.063	0.312
RELA	0	-1.130	1.600	0.793
SMARCC1	0	0.140	0.090	0.553	0.112	0.584	0.137	0.136
STAT5B	0	0.670	-0.960
SFN	0	0.890	0.120				-4.300
PBX1	0	-0.600	0.280
PBX1	0	-0.600	0.280	-0.186		-0.124

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
AKT1	Phosphorylation	S124	0.252	0.311	_SGS(ph)PSDNSGAEEMEVSLAKPK_
AKT1	Phosphorylation	S126	-0.241		_SGSPS(ph)DNSGAEEM(ox)EVSLAK_
AKT1	Ubiquitylation	K301	0.988		_EGIK(gl)DGATMK_
BAX	Ubiquitylation	K57		-1.174	_MGGEAPELALDPVPQDASTK(gl)K_
BAX	Ubiquitylation	K58	-1.718	-1.174	_MGGEAPELALDPVPQDASTKK(gl)_
BAX	Ubiquitylation	K64	0.708	1.306	_LSECLK(gl)R_
CDK5	Ubiquitylation	K56	0.606	0.237	_EICLLK(gl)ELK_
CDKN1A	Ubiquitylation	K188	-2.505	-1.077	_QTSMTDFYHSK(gl)R_
CREB1	Phosphorylation	S271	-0.979	-1.450	_TAPTSTIAPGVVM(ox)ASS(ph)PALPTQPAEEAAR_
CREB1	Ubiquitylation	K333	1.343		_ALK(gl)DLYCHK_
CREBBP	Phosphorylation	S2093	0.037	0.097	_SIS(ph)PSALQDLLR_
EP300	Phosphorylation	S1038	-0.672	-0.349	_TEIKEEEDQPSTSATQSS(ph)PAPGQSK_
EP300	Phosphorylation	S1726	0.994	0.627	_LGLGLDDESNNQQAAATQS(ph)PGDSRR_
EP300	Phosphorylation	S2328	-1.092	0.725	_PQSQPPHSSPS(ph)PR_
FKBP4	Ubiquitylation	K28	-1.537		_ATESGAQSAPLPMEGVDISPK(gl)QDEGVLK_
FKBP4	Ubiquitylation	K282	1.052	1.457	_GTVYFK(gl)EGK_
FKBP4	Ubiquitylation	K354		1.353	_ALELDSNNEK(gl)GLFR_
FKBP4	Ubiquitylation	K387	-0.016		_VLQLYPNNK(gl)AAK_
FKBP4	Ubiquitylation	K390	1.528	2.262	_AAK(gl)TQLAVCQQR_
FKBP4	Ubiquitylation	K409	0.591		_K(gl)LYANMFER_
FKBP4	Ubiquitylation	K441	-0.410		_AEASSGDHPTDTEMK(gl)EEQK_
FKBP5	Phosphorylation	S13	0.444	0.386	_NNEES(ph)PTATVAEQGEDITSK_
FKBP5	Ubiquitylation	K58	0.769		_VYVHYK(gl)GK_
FKBP5	Ubiquitylation	K352	1.350	-0.383	_ALGLDSANEK(gl)GLYR_
FKBP5	Ubiquitylation	K385		-0.606	_VLEVNPQNK(gl)AAR_
FKBP5	Ubiquitylation	K422	0.032		_FAEQDAK(gl)EEANK_
FKBP5	Phosphorylation	T443	-0.653		_GT(ph)DSQAMEEEKPEGHV_
FKBP5	Phosphorylation	S445	2.419	2.011	_GTDS(ph)QAMEEEKPEGHV_
GATA3	Phosphorylation	S162	-1.195	-0.563	_DVS(ph)PDPSLSTPGSAGSAR_
GSK3B	Phosphorylation	S9	-0.483	0.010	_TTS(ph)FAESCKPVQQPSAFGSMK_
GSK3B	Ubiquitylation	K85		-0.204	_LCDSGELVAIK(gl)K_
GSK3B	Ubiquitylation	K86		-0.204	_LCDSGELVAIK(gl)K_
GSK3B	Phosphorylation	S215	0.296	0.477	_GEPNVS(ph)YICSR_
GSK3B	Phosphorylation	Y216	0.356	0.376	_GEPNVSY(ph)ICSR_
GSK3B	Phosphorylation	T390	2.800	2.527	_IQAAAST(ph)PTNATAASDANTGDR_
HDAC1	Ubiquitylation	K50	0.036		_K(gl)MEIYRPHK_
HDAC1	Ubiquitylation	K66		-0.593	_ANAEEMTK(gl)YHSDDYIK_
HDAC1	Ubiquitylation	K74	0.620	-1.473	_YHSDDYIK(gl)FLR_
HDAC1	Ubiquitylation	K89	0.749	-0.241	_SIRPDNMSEYSK(gl)QMQR_
HDAC1	Phosphorylation	S393	-1.133	-1.144	_M(ox)LPHAPGVQM(ox)QAIPEDAIPEES(ph)GDEDEDDPDKR_
HDAC1	Phosphorylation	S409	1.326	1.144	_ISICS(ph)SDKR_
HDAC1	Phosphorylation	S410	1.326	1.144	_ISICS(ph)SDKR_
HDAC1	Ubiquitylation	K412	0.642	-0.744	_ISICSSDK(gl)R_
HDAC2	Ubiquitylation	K50	0.036		_K(gl)MEIYRPHK_
HDAC2	Ubiquitylation	K67		-0.467	_ATAEEMTK(gl)YHSDEYIK_
HDAC2	Ubiquitylation	K89	0.749	-0.241	_SIRPDNMSEYSK(gl)QMQR_
HDAC2	Ubiquitylation	K284	0.749		_GHAK(gl)CVEVVK_
HDAC2	Phosphorylation	S394	-0.865	-0.997	_M(ox)LPHAPGVQM(ox)QAIPEDAVHEDS(ph)GDEDGEDPDKR_
HDAC2	Phosphorylation	S422	0.482	0.781	_IACDEEFS(ph)DSEDEGEGGR_
HSP90AA1	Ubiquitylation	K69	0.820	-0.090	_YESLTDPSK(gl)LDSGK_
HSP90AA1	Ubiquitylation	K74	0.543		_LDSGK(gl)ELHINLIPNKQDR_
HSP90AA1	Ubiquitylation	K112	1.304	1.601	_ADLINNLGTIAK(gl)SGTK_
HSP90AA1	Ubiquitylation	K185	0.963		_GTK(gl)VILHLK_
HSP90AA1	Ubiquitylation	K208	1.745		_IKEIVK(gl)K_
HSP90AA1	Phosphorylation	S231	2.338	0.649	_DKEVS(ph)DDEAEEK_
HSP90AA1	Phosphorylation	S263	0.095	0.173	_ESEDKPEIEDVGS(ph)DEEEEKK_
HSP90AA1	Ubiquitylation	K281	1.267		_IK(gl)EKYIDQEELNK_
HSP90AA1	Ubiquitylation	K283	1.442	1.226	_EK(gl)YIDQEELNK_
HSP90AA1	Ubiquitylation	K292	-0.237	0.506	_YIDQEELNK(gl)TKPIWTR_
HSP90AA1	Ubiquitylation	K294	0.315	8.646	_TK(gl)PIWTR_
HSP90AA1	Ubiquitylation	K362	0.969	0.946	_NNIK(gl)LYVR_
HSP90AA1	Ubiquitylation	K407	0.827	1.121	_EMLQQSK(gl)ILK_
HSP90AA1	Ubiquitylation	K443	0.820	0.951	_FYEQFSK(gl)NIK_
HSP90AA1	Ubiquitylation	K446	0.314	1.126	_NIK(gl)LGIHEDSQNR_
HSP90AA1	Ubiquitylation	K478	0.799	1.624	_YYTSASGDEM(ox)VSLK(gl)DYCTR_
HSP90AA1	Ubiquitylation	K539	0.353	1.775	_EFEGK(gl)TLVSVTK_
HSP90AA1	Ubiquitylation	K559	-0.316		_EGLELPEDEEEKK(gl)K_
HSP90AA1	Ubiquitylation	K565	0.903		_K(gl)TKFENLCK_
HSP90AA1	Ubiquitylation	K567	0.710		_TK(gl)FENLCK_
HSP90AA1	Ubiquitylation	K576	0.874		_IMK(gl)DILEK_
HSP90AA1	Ubiquitylation	K581	0.540	0.738	_DILEK(gl)KVEK_
HSP90AA1	Ubiquitylation	K582	0.063	0.470	_K(gl)VEKVVVSNR_
HSP90AA1	Ubiquitylation	K615	0.715	0.751	_IMK(gl)AQALR_
HSP90AA1	Ubiquitylation	K631	0.361	0.974	_DNSTMGYMAAK(gl)K_
JUN	Phosphorylation	S58	-0.167	-1.247	_AKNS(ph)DLLTSPDVGLLK_
JUN	Phosphorylation	T62	2.545	1.674	_NSDLLT(ph)SPDVGLLK_
JUN	Phosphorylation	S63	2.030	1.458	_NSDLLTS(ph)PDVGLLK_
JUN	Ubiquitylation	K70	9.213		_NSDLLTSPDVGLLK(gl)_
JUN	Phosphorylation	S73	1.499	0.845	_LAS(ph)PELER_
JUN	Phosphorylation	S243	-0.642	-1.399	_LQALKEEPQTVPEMPGETPPLS(ph)PIDMESQER_
JUN	Ubiquitylation	K309	1.034	0.155	_EQVAQLK(gl)QK_
MAPK14	Phosphorylation	S2	3.221	3.623	_(ac)S(ph)QERPTFYR_
MAPK14	Phosphorylation	T180	0.958	1.087	_HTDDEM(ox)T(ph)GYVATR_
MAPK14	Phosphorylation	Y182	1.388	1.374	_HTDDEM(ox)TGY(ph)VATR_
MAPK14	Ubiquitylation	K249	0.073	-1.380	_LVGTPGAELLKK(gl)_
MAPK3	Phosphorylation	Y204	-0.807	-2.487	_IADPEHDHTGFLTEY(ph)VATR_
MAPK3	Ubiquitylation	K289		-0.608	_NYLQSLPSKTK(gl)_
MAPK9	Phosphorylation	Y185		3.533	_TACTNFMMTPY(ph)VVTR_
MDM2	Phosphorylation	S166	0.576	1.068	_AIS(ph)ETEENSDELSGER_
MDM2	Ubiquitylation	K334		-0.872	_ENWLPEDK(gl)GK_
MDM2	Ubiquitylation	K336		-0.872	_ENWLPEDK(gl)GK_
MDM2	Ubiquitylation	K363		0.883	_LENSTQAEEGFDVPDCK(gl)K_
MDM2	Ubiquitylation	K364		0.883	_LENSTQAEEGFDVPDCK(gl)K_
MDM2	Ubiquitylation	K473		0.806	_NK(gl)PCPVCR_
NCOA1	Phosphorylation	S22	0.503	0.810	_KGS(ph)PCDTLASSTEK_
NCOA2	Phosphorylation	S699	-0.159	-0.104	_LLQDSSS(ph)PVDLAK_
NCOA2	Phosphorylation	S771	1.654	0.621	_LDS(ph)KTDPASNTK_
NFKB1	Phosphorylation	S907	-0.025	0.113	_TTSQAHSLPLS(ph)PASTR_
NR3C1	Phosphorylation	S45	-0.810	-0.399	_VSASS(ph)PSLAVASQSDSK_
NR3C1	Phosphorylation	S226		-0.070	_SDLLIDENCLLS(ph)PLAGEDDSFLLEGNSNEDCKPLILPDTKPK_
NR3C1	Ubiquitylation	K696		0.338	_MTYIK(gl)ELGK_
PBX1	Ubiquitylation	K164		-0.541	_SK(gl)LAQIR_
PBX1	Ubiquitylation	K195	-1.614		_TRPISPK(gl)EIER_
PBX2	Ubiquitylation	K164		-0.541	_SK(gl)LAQIR_
POU2F1	Phosphorylation	S8	1.971	2.219	_(ac)ADGGAAS(ph)QDESSAAAAAAADSR_
POU2F1	Phosphorylation	S408	0.932	1.562	_RTS(ph)IETNIR_
POU2F1	Phosphorylation	S471	-0.483	-0.496	_RINPPSSGGTSSS(ph)PIK_
PPP5C	Ubiquitylation	K42	-0.703		_AK(gl)DYENAIK_
PRKACA	Ubiquitylation	K30	-0.143		_AKEDFLKK(gl)_
PRKACA	Ubiquitylation	K93	0.839	0.714	_QIEHTLNEK(gl)R_
PRKACB	Ubiquitylation	K30	-0.143		_AKEDFLKK(gl)_
PRKACB	Ubiquitylation	K93	0.839	0.714	_QIEHTLNEK(gl)R_
PRKACB	Phosphorylation	T243		-0.835	_T(ph)WTLCGTPEYLAPEIILSK_
PRKACB	Phosphorylation	T245	-0.116	-0.102	_TWT(ph)LCGTPEYLAPEIILSK_
SFN	Ubiquitylation	K11	0.561	0.388	_AK(gl)LAEQAER_
SFN	Ubiquitylation	K49	-0.093	0.337	_NLLSVAYK(gl)_
SMARCA4	Ubiquitylation	K357	-0.934		_ITPIQK(gl)PR_
SMARCA4	Ubiquitylation	K405	0.109	1.148	_ATIELK(gl)ALR_
SMARCA4	Ubiquitylation	K437	-0.317		_DTALETALNAK(gl)AYKR_
SMARCA4	Ubiquitylation	K455	0.225		_ITEK(gl)LEK_
SMARCA4	Ubiquitylation	K496		0.923	_SVTGK(gl)IQK_
SMARCA4	Phosphorylation	S677	-0.880	-0.324	_KAENAEGQTPAIGPDGEPLDETSQMS(ph)DLPVK_
SMARCA4	Ubiquitylation	K1283	0.125		_ILAAAK(gl)YK_
SMARCA4	Phosphorylation	S1413	-0.265	0.515	_EVDYSDS(ph)LTEK_
SMARCA4	Phosphorylation	S1486	-0.713	-0.935	_LS(ph)PNPPNLTK_
SMARCC1	Phosphorylation	S310	-0.047	0.123	_NEEPVRS(ph)PERR_
SMARCC1	Phosphorylation	S328	-0.755	-0.358	_KHS(ph)PS(ph)PPPPTPTESR_
SMARCC1	Phosphorylation	S330	-0.755	-1.491	_KHS(ph)PS(ph)PPPPTPTESR_
SMARCC1	Ubiquitylation	K588	-0.831		_SPQVPAAQQMLNFPEK(gl)NK_
SMARCC1	Ubiquitylation	K590	-0.737		_NK(gl)EKPVDLQNFGLR_
SMARCC1	Ubiquitylation	K592	-0.509		_EK(gl)PVDLQNFGLR_
SMARCC1	Ubiquitylation	K608	-0.342	0.588	_TDIYSK(gl)K_
SMARCC1	Ubiquitylation	K609	-0.053	0.520	_TDIYSKK(gl)_
SMARCC1	Ubiquitylation	K716	0.001		_VASAAAK(gl)AALEEFSR_
SMARCC1	Ubiquitylation	K882	0.402		_AK(gl)HLAAVEER_
SMARCC2	Ubiquitylation	K161	-0.199		_LKDIIK(gl)R_
SMARCC2	Phosphorylation	S283	0.602	0.869	_TLTDEVNS(ph)PDSDRR_
SMARCC2	Phosphorylation	S302	-0.755	-0.668	_RS(ph)PSPSPTPEAK_
SMARCC2	Phosphorylation	S347	-0.627	-0.862	_DMDEPS(ph)PVPNVEEVTLPK_
SMARCC2	Ubiquitylation	K455	-0.775		_ALPEFFNGKNK(gl)_
SMARCC2	Ubiquitylation	K694	0.389		_VASAAAK(gl)SALEEFSK_
SMARCC2	Ubiquitylation	K872	-0.712		_DIGEGNLSTAAAAALAAAAVK(gl)AK_
SMARCC2	Ubiquitylation	K874	0.402		_AK(gl)HLAAVEER_
SMARCC2	Ubiquitylation	K902	0.641	0.460	_KLEIK(gl)LR_
SMARCD1	Ubiquitylation	K156		-0.309	_K(gl)LDQTIMR_
SMARCD1	Ubiquitylation	K182		-1.309	_SALSK(gl)YDATK_
SMARCD1	Ubiquitylation	K223	0.456	0.835	_LLEDSALSK(gl)YDATK_
SMARCD1	Ubiquitylation	K273		-1.081	_TATTQETDGFQVK(gl)RPGDVNVR_
SMARCD1	Ubiquitylation	K464	-0.278	-0.878	_DLK(gl)TMTDVVGNPEEERR_
SMARCD1	Ubiquitylation	K498		-0.671	_YFYSK(gl)VQQR_
STAT1	Phosphorylation	S727	1.377	0.974	_LQTTDNLLPMS(ph)PEEFDEVSR_
STAT5B	Phosphorylation	S194		0.270	_IQAQFGPLAQLS(ph)PQER_
TBP	Ubiquitylation	K181	-0.140	-0.577	_LDLK(gl)TIALR_
TBP	Ubiquitylation	K225		-0.596	_MVCTGAK(gl)SEEQSR_
TP53	Ubiquitylation	K120	-0.188		_LGFLHSGTAK(gl)SVTCTYSPALNK_
TP53	Ubiquitylation	K164	0.157	-1.260	_AMAIYK(gl)QSQHMTEVVR_
TP53	Phosphorylation	S314	-0.695	-1.000	_ALPNNTSS(ph)SPQPK_
TP53	Phosphorylation	S315	-0.762	-0.959	_RALPNNTSSS(ph)PQPK_
TP53	Ubiquitylation	K320	-0.978		_ALPNNTSSSPQPKK(gl)_
TP53	Ubiquitylation	K357	-0.231	-0.823	_ELNEALELKDAQAGK(gl)EPGGSR_
TSG101	Ubiquitylation	K237	-1.467	0.252	_ASLISAVSDK(gl)LR_
TSG101	Ubiquitylation	K257	0.192	0.329	_AQAELNALK(gl)R_
YWHAH	Ubiquitylation	K143	0.540		_YLAEVASGEKK(gl)_