RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
CAMK2B	1	1.200	-0.790
CAMK2B	1	1.200	-0.790		-0.654	0.073
CAMK2B	1	1.200	-0.790	-0.619			0.544	0.125
CAMK2B	1	1.200	-0.790				0.559	1.698
PML	1	-0.420	0.350		-0.244	0.322
VCAM1	1	1.250	-0.880				-0.412	-0.373
HLA-B	1	0.000	-0.310				0.604	0.718
HLA-B	1	0.000	-0.310				-0.626
HLA-B	1	0.000	-0.310				1.149
HLA-B	1	0.000	-0.310
HLA-B	1	0.000	-0.310
CD44	0	0.270	-0.230
IFNGR1	0	-1.300	2.410
PIAS1	0	-1.020	1.720	-1.034	-0.678	0.471	-0.051	1.019
CAMK2A	0	-0.430	0.130		-0.654	0.073
CAMK2A	0	-0.430	0.130	-0.619			0.544	0.125
STAT1	0	-0.550	0.170
SUMO1	0	0.450	0.060	-0.088	0.599	0.276	0.608	0.499
IRF3	0	-0.190	-0.050
CAMK2D	0	-0.260	0.500		-0.654	0.073
CAMK2D	0	-0.260	0.500	-0.619			0.544	0.125
CAMK2D	0	-0.260	0.500
JAK1	0	0.190	-0.100		-1.504	-0.381		-0.438
PRKCD	0	0.250	0.070				0.578	0.427
PTPN2	0	1.210	-0.730
PTPN1	0	-0.150	0.310	1.066	0.459	0.251	0.322	0.379
HLA-C	0						0.604	0.718
HLA-C	0
HLA-C	0
HLA-A	0	0.790	-0.840				-0.626
HLA-C	0						-0.626
HLA-F	0	0.020	-0.190				-0.626
HLA-G	0	0.000	0.140				-0.626
HLA-A	0	0.790	-0.840				1.149
HLA-C	0						1.149
HLA-A	0	0.790	-0.840

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
CAMK2A	Ubiquitylation	K251	-0.437		_DLINK(gl)MLTINPAK_
CAMK2B	Ubiquitylation	K147		-1.064	_DLKPENLLLASK(gl)CK_
CAMK2B	Ubiquitylation	K251	-0.437		_DLINK(gl)MLTINPAK_
CAMK2D	Ubiquitylation	K251	-0.437		_DLINK(gl)MLTINPAK_
CAMK2D	Phosphorylation	S330	0.412	0.370	_KPDGVKES(ph)TESSNTTIEDEDVK_
CAMK2D	Phosphorylation	T331		-0.174	_KPDGVKES(ph)TESSNTTIEDEDVK_
CAMK2D	Phosphorylation	T336	0.615	0.376	_ESTESSNT(ph)TIEDEDVK_
CAMK2D	Phosphorylation	T337	0.450		_ESTESSNTT(ph)IEDEDVK_
CD44	Ubiquitylation	K739	-0.024	0.134	_NLQNVDMK(gl)IGV_
HLA-A	Ubiquitylation	K92		-0.349	_NVK(gl)AQSQTDRVDLGTLR_
HLA-A	Ubiquitylation	K168		0.549	_SWTAADMAAQITK(gl)R_
HLA-A	Ubiquitylation	K346	-0.072	-0.211	_K(gl)GGSYTQAASSDSAQGSDVSLTACK(gl)V_
HLA-A	Ubiquitylation	K370	0.345	0.434	_K(gl)GGSYTQAASSDSAQGSDVSLTACK(gl)V_
HLA-B	Ubiquitylation	K177		-0.088	_YLENGKDK(gl)LER_
HLA-B	Ubiquitylation	K267		-0.118	_TFQK(gl)WAAVVVPSGEEQR_
HLA-C	Ubiquitylation	K120		-0.876	_GYDQSAYDGK(gl)DYIALNEDLR_
HLA-C	Ubiquitylation	K341	-0.900	-0.092	_SSGGK(gl)GGSCSQAACSNSAQGSDESLITCK_
IFNGR1	Ubiquitylation	K299	-0.875	-0.201	_SATLETK(gl)PESK_
IRF3	Phosphorylation	S173	-0.663	-1.111	_S(ph)PSLDNPTPFPNLGPSENPLK_
IRF3	Phosphorylation	S175	-0.663	-0.661	_S(ph)PSLDNPTPFPNLGPSENPLKR_
IRF3	Ubiquitylation	K193	-3.309	-3.157	_SPSLDNPTPFPNLGPSENPLK(gl)R_
JAK1	Ubiquitylation	K227	-0.405		_YIPETLNK(gl)SIR_
JAK1	Ubiquitylation	K249	0.116	0.771	_DFLK(gl)EFNNK_
JAK1	Ubiquitylation	K559	-0.478		_EISNLLVATK(gl)K_
PIAS1	Ubiquitylation	K60		-1.191	_AGCSPAVQMKIK(gl)_
PIAS1	Ubiquitylation	K341		-1.248	_VSLLCPLGK(gl)MR_
PIAS1	Phosphorylation	S490	-0.898	-0.944	_RTCPSLSPTS(ph)PLNNK_
PIAS1	Phosphorylation	S505	0.198	-0.250	_GILSLPHQAS(ph)PVSR_
PML	Ubiquitylation	K394	0.515	0.360	_LQDLSSCITQGK(gl)DAAVSKK_
PML	Phosphorylation	S403		3.141	_KAS(ph)PEAASTPRDPIDVDLPEEAER_
PML	Ubiquitylation	K476	-0.403	-0.735	_GPSYGEDVSNTTTAQK(gl)R_
PML	Phosphorylation	S504	-0.198	-0.109	_S(ph)SPEQPRPSTSK_
PML	Phosphorylation	S505	-0.198	-0.109	_S(ph)SPEQPRPSTSK_
PML	Phosphorylation	S518	-1.632	-1.605	_AVS(ph)PPHLDGPPS(ph)PR_
PML	Phosphorylation	S527	-1.392	-1.605	_AVS(ph)PPHLDGPPS(ph)PR_
PML	Phosphorylation	S530	0.466	0.093	_S(ph)PVIGSEVFLPNSNHVASGAGEAEER_
PML	Ubiquitylation	K623		-0.784	_IDNETQK(gl)ISQLAAVNR_
PRKCD	Ubiquitylation	K138	-0.141		_SEDEAK(gl)FPTMNR_
PRKCD	Ubiquitylation	K222	0.185	0.658	_DTIFQK(gl)ER_
PRKCD	Phosphorylation	S302	-0.240	-0.222	_S(ph)DSASSEPVGIYQGFEK_
PRKCD	Phosphorylation	S304	0.378	0.289	_RSDS(ph)ASSEPVGIYQGFEK_
PRKCD	Phosphorylation	S506	-0.213	0.200	_AS(ph)TFCGTPDYIAPEILQGLK_
PRKCD	Phosphorylation	T507	-0.149	0.240	_AS(ph)TFCGTPDYIAPEILQGLK_
PRKCD	Ubiquitylation	K641	-2.000		_DYSNFDQEFLNEK(gl)AR_
PRKCD	Phosphorylation	S645	0.577	0.832	_ARLS(ph)YSDK_
PRKCD	Phosphorylation	S647	0.886	0.853	_ARLSYS(ph)DK_
PTPN1	Phosphorylation	S352		0.032	_GS(ph)PLNAAPYGIESMSQDTEVR_
PTPN1	Phosphorylation	S365	-0.247	0.956	_GSPLNAAPYGIESMS(ph)QDTEVR_
PTPN1	Phosphorylation	S378	1.462	1.262	_VVGGS(ph)LR_
PTPN2	Phosphorylation	S304	-0.873	-0.641	_ELSKEDLSPAFDHS(ph)PNK_
STAT1	Phosphorylation	S727	1.377	0.974	_LQTTDNLLPMS(ph)PEEFDEVSR_
SUMO1	Phosphorylation	S2	0.441	0.416	_(ac)S(ph)DQEAKPSTEDLGDKK_
SUMO1	Ubiquitylation	K7	-0.850	-1.885	_(ac)SDQEAK(gl)PSTEDLGDKK_
SUMO1	Ubiquitylation	K16	-0.686	-1.532	_(ac)SDQEAKPSTEDLGDK(gl)KEGEYIK_
SUMO1	Ubiquitylation	K17	-0.857	-1.847	_(ac)SDQEAKPSTEDLGDKK(gl)EGEYIK_
SUMO1	Ubiquitylation	K23	0.713	-0.346	_EGEYIK(gl)LK_
SUMO1	Ubiquitylation	K37	0.417		_VIGQDSSEIHFK(gl)VK_
SUMO1	Ubiquitylation	K45	0.975		_MTTHLK(gl)K_
SUMO1	Ubiquitylation	K46	0.647		_K(gl)LKESYCQR_
SUMO1	Ubiquitylation	K48	-0.241	-0.185	_LK(gl)ESYCQR_
VCAM1	Ubiquitylation	K263	0.419	-0.113	_STLQIGK(gl)R_
VCAM1	Phosphorylation	S276		0.013	_RDANSSFFDNSSS(ph)PHLLDQLK_
VCAM1	Ubiquitylation	K293		-0.460	_NK(gl)INELELR_
VCAM1	Ubiquitylation	K326		-0.856	_FQELQLQLEKAK(gl)_
VCAM1	Ubiquitylation	K513		-1.965	_NIK(gl)QCLNQSQNFAEEMK_
VCAM1	Ubiquitylation	K555	-0.739	-0.237	_INQQENSLTLEK(gl)LK_
VCAM1	Ubiquitylation	K606		0.112	_ALLSALELKK(gl)_
VCAM1	Ubiquitylation	K657	-0.600	0.172	_TQQIK(gl)SHEYNER_
VCAM1	Ubiquitylation	K689		-0.011	_NLHNVLDSK(gl)SVEVETQK_
VCAM1	Ubiquitylation	K770	-1.636	-0.056	_SK(gl)DASLVTNEDHQR_
VCAM1	Ubiquitylation	K823	-1.207	-0.686	_LEADQSPK(gl)NSAILQNR_
VCAM1	Phosphorylation	S834		1.282	_VDS(ph)LEFSLESQK_
VCAM1	Ubiquitylation	K1022	-0.770		_SISELSDQYKQEK(gl)_
VCAM1	Phosphorylation	S1255		2.400	_GDLETSNLQDMQS(ph)QEISGLKDCEIDAEEK_
VCAM1	Phosphorylation	S1747		-0.145	_LQLQGLDLS(ph)SR_
VCAM1	Phosphorylation	S1750	-1.171	-0.117	_S(ph)LLGIDTEDAIQGR_
VCAM1	Phosphorylation	T1825		-0.475	_ITETGAVKPTGECSGEQSPDT(ph)NYEPPGEDK_
VCAM1	Ubiquitylation	K2069	-0.699		_GELDTMSKK(gl)_
VCAM1	Ubiquitylation	K2713		0.058	_MTAK(gl)ETELQR_
VCAM1	Ubiquitylation	K2739	-1.524		_TAELQEELSGEK(gl)NR_
VCAM1	Phosphorylation	S2996	-1.047	-1.005	_GS(ph)PLLGPVVPGPS(ph)PIPSVTEK_
VCAM1	Phosphorylation	S3007	-0.910	-2.059	_GS(ph)PLLGPVVPGPS(ph)PIPSVTEK_
VCAM1	Phosphorylation	S3119	-0.975	-0.328	_LALS(ph)PLSLGK_
VCAM1	Phosphorylation	S3150	1.391	1.078	_VAQRS(ph)PVDSGTILR_
VCAM1	Phosphorylation	S3175	1.052	0.884	_SVPVNNLPERS(ph)PTDSPR_