RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
TIMELESS	2	-0.820	1.340	-0.115	-0.810	1.489	0.880	0.424
CHEK1	2	-1.170	1.560
CHEK1	2	-1.170	1.560
ATR	1	-1.040	0.920	0.671			1.041	0.708
BHLHE40	0	-0.330	0.040
NONO	0	-1.510	2.340	-0.053	0.223	-0.198	-0.033	-0.027
NONO	0	-1.510	2.340
PER1	0	1.020	-0.450
WDR5	0	0.230	0.330	-0.088	-0.237	0.506	0.098	-0.100
CSNK1E	0	-0.170	-0.440		0.150	0.527
CSNK1E	0	-0.170	-0.440	1.237			-0.682	-0.148

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ATR	Ubiquitylation	K32		-0.929	_ELGSATPEEYNTVVQK(gl)PR_
ATR	Phosphorylation	S435	0.516	0.284	_RLS(ph)SSLNPSK_
ATR	Ubiquitylation	K746		-1.823	_NLK(gl)ATSQHECSSSQLK_
ATR	Ubiquitylation	K1019	1.662		_TLGK(gl)QLNVNRR_
ATR	Ubiquitylation	K1600	-0.437		_FQALK(gl)AEK_
ATR	Ubiquitylation	K2106		-0.136	_AYEWEK(gl)AGR_
ATR	Ubiquitylation	K2604	0.657	1.118	_LQGVIK(gl)TR_
BHLHE40	Ubiquitylation	K159		-0.521	_EVLQYLAK(gl)HENTR_
BHLHE40	Ubiquitylation	K262		-1.135	_SEQPCFK(gl)SDHGR_
BHLHE40	Phosphorylation	S383		-2.162	_LPS(ph)PLPAHPSVDSSVLLQALKPIPPLNLETKD_
CHEK1	Ubiquitylation	K53	0.879		_AVDCPENIK(gl)K_
CHEK1	Ubiquitylation	K54	0.738		_AVDCPENIKK(gl)_
CHEK1	Phosphorylation	S296	-0.098	0.184	_VTS(ph)GGVSESPSGFSK_
CHEK1	Phosphorylation	S300		1.091	_VTSGGVS(ph)ESPSGFSK_
CHEK1	Phosphorylation	S302	1.750		_VTSGGVSES(ph)PSGFSK_
CHEK1	Phosphorylation	S317		1.903	_HIQSNLDFS(ph)PVNSASSEENVK_
CHEK1	Ubiquitylation	K399	-0.582		_ETCEK(gl)LGYQWK_
CSNK1E	Ubiquitylation	K43		-1.168	_LECVK(gl)TK_
CSNK1E	Ubiquitylation	K45		-1.168	_LECVK(gl)TK_
CSNK1E	Ubiquitylation	K140	-0.969		_DVKPDNFLMGLGK(gl)K_
CSNK1E	Ubiquitylation	K141	-0.969	-0.720	_DVKPDNFLMGLGKK(gl)_
CSNK1E	Phosphorylation	S363	-0.662	-0.352	_IQPAGNTS(ph)PR_
CSNK1E	Phosphorylation	S389	0.394	0.817	_GAPANVS(ph)SSDLTGR_
NONO	Ubiquitylation	K5	0.390	-0.727	_(ac)MQSNK(gl)TFNLEK_
NONO	Ubiquitylation	K11	0.290	-1.060	_TFNLEK(gl)QNHTPR_
NONO	Ubiquitylation	K68	-0.317		_KPGEK(gl)TFTQR_
NONO	Ubiquitylation	K96	0.095	-0.745	_KLFEK(gl)YGK_
NONO	Ubiquitylation	K99	0.301	-1.179	_YGK(gl)AGEVFIHK_
NONO	Ubiquitylation	K107		-1.009	_AGEVFIHK(gl)DK_
NONO	Ubiquitylation	K109	0.479	0.300	_DK(gl)GFGFIR_
NONO	Ubiquitylation	K190	-1.285	-2.164	_GRPSGK(gl)GIVEFSGKPAAR_
NONO	Ubiquitylation	K198	0.167	-0.607	_GIVEFSGK(gl)PAAR_
NONO	Ubiquitylation	K243	0.302	-1.020	_LVIK(gl)NQQFHK_
NONO	Ubiquitylation	K272	0.498		_WK(gl)ALIEMEK_
NONO	Ubiquitylation	K279	0.027	-0.480	_ALIEMEK(gl)QQQDQVDR_
NONO	Ubiquitylation	K336	0.158	-0.998	_MEELHNQEVQK(gl)R_
NONO	Ubiquitylation	K371	-0.098	-0.962	_RQQEGFK(gl)GTFPDAR_
NONO	Phosphorylation	T428		-2.034	_GAM(ox)PPAPVPAGTPAPPGPATMMPDGTLGLT(ph)PPTTER_
NONO	Phosphorylation	T450	0.010	-0.660	_FGQAATM(ox)EGIGAIGGT(ph)PPAFNR_
NONO	Ubiquitylation	K467	-0.128	-0.646	_AAPGAEFAPNK(gl)R_
PER1	Ubiquitylation	K295		-1.272	_DFTQEK(gl)SVFCR_
TIMELESS	Ubiquitylation	K528		-0.868	_GNLVVQNK(gl)QK_
TIMELESS	Ubiquitylation	K530		-0.868	_GNLVVQNK(gl)QK_
TIMELESS	Phosphorylation	S1087	0.076	-0.254	_LS(ph)PTQLR_
TIMELESS	Phosphorylation	S1149	1.556	1.776	_KAGLAS(ph)PEEEDAVGKEPLK_
TIMELESS	Phosphorylation	S1173		0.502	_RQLLDS(ph)DEEQEEDEGR_
WDR5	Ubiquitylation	K27	-1.584		_AQPTPSSSATQSK(gl)PTPVKPNYALK_
WDR5	Ubiquitylation	K32	-1.722		_AQPTPSSSATQSKPTPVK(gl)PNYALK_
WDR5	Ubiquitylation	K120	0.445		_IWDVSSGK(gl)CLK_
WDR5	Ubiquitylation	K245	0.475		_LWDYSK(gl)GK_
WDR5	Ubiquitylation	K247	0.475		_LWDYSK(gl)GK_