Results for the Category
poly(A) RNA binding
(GO:0008143)
| RNAi screen result | RNAPII IP (MG132) | CSB IP | CSB IP (MG132) | Chrom. | Chrom. (MG132) | Ubi /Phospo | Ubi /Phospho (MG132) |
| W | |||||||
| Gene name | MGoogle Score | RNAi high | RNAi low | RNAPII-IP (MG132) | CSB-IP | CSB-IP (MG132) | Chrom. | Chrom. (MG132) |
|---|---|---|---|---|---|---|---|---|
| EIF4A3 | 2 | -1.590 | 2.620 | 0.070 | 0.033 | 0.220 | -0.539 | -0.195 |
| DDX3X | 2 | -0.250 | 0.370 | 0.081 | -0.794 | -0.166 | -0.062 | -0.025 |
| PABPC5 | 1 | 2.120 | -1.000 | 0.167 | -0.387 | -0.147 | -0.312 | -0.037 |
| HNRNPDL | 1 | -0.120 | 0.440 | -0.222 | -0.668 | -0.303 | -0.338 | -0.010 |
| PABPC1 | 0 | 0.100 | -0.400 | 0.167 | -0.387 | -0.147 | -0.312 | -0.037 |
| DDX1 | 0 | -0.100 | 0.160 | -0.034 | -0.036 | 0.487 | -0.133 | 0.258 |
| PABPC4 | 0 | 0.660 | -0.110 | 0.211 | -0.241 | 0.015 | -0.206 | 0.105 |
| KHDRBS2 | 0 | 0.670 | -0.480 | |||||
| KHDRBS2 | 0 | 0.670 | -0.480 | -0.648 | -1.258 | -0.381 | -0.646 | -0.079 |
| TIA1 | 0 | -1.050 | 1.250 | |||||
| TIA1 | 0 | -1.050 | 1.250 | -0.721 | -0.259 | -0.319 | -0.332 | -0.199 |
| TIA1 | 0 | -1.050 | 1.250 | -0.455 | 0.130 | 0.623 | ||
| SYNCRIP | 0 | -1.170 | 2.050 | |||||
| SYNCRIP | 0 | -1.170 | 2.050 | 0.328 | -0.116 | 0.051 | ||
| RBPMS | 0 | -0.920 | 1.850 |
| Gene name | PTM type | PTM site | UV | UV (MG132) | Sequence |
|---|---|---|---|---|---|
| DDX1 | Ubiquitylation | K82 | -0.137 | _TTIK(gl)TGASVLNK_ | |
| DDX1 | Ubiquitylation | K117 | 1.370 | _EVK(gl)EWHGCR_ | |
| DDX1 | Ubiquitylation | K173 | 1.499 | _FGFGFGGTGKK(gl)_ | |
| DDX1 | Ubiquitylation | K260 | -0.585 | _DGFVALSK(gl)APDGYIVK_ | |
| DDX1 | Ubiquitylation | K281 | 0.294 | _SQHSGNAQVTQTK(gl)FLPNAPK_ | |
| DDX1 | Ubiquitylation | K358 | 1.293 | _LDDLVSTGK(gl)LNLSQVR_ | |
| DDX1 | Phosphorylation | S481 | 0.023 | 0.050 | _DNTRPGANS(ph)PEMWSEAIK_ |
| DDX3X | Ubiquitylation | K78 | 1.311 | _DK(gl)DAYSSFGSR_ | |
| DDX3X | Ubiquitylation | K93 | 0.657 | 1.846 | _GK(gl)SSFFSDR_ |
| DDX3X | Phosphorylation | S94 | 0.172 | _S(ph)SFFSDRGSGSR_ | |
| DDX3X | Phosphorylation | S102 | 0.008 | 0.230 | _SSFFSDRGS(ph)GSR_ |
| DDX3X | Phosphorylation | S104 | -0.231 | 0.320 | _SSFFSDRGSGS(ph)R_ |
| DDX3X | Ubiquitylation | K130 | 1.572 | 1.502 | _SGFGK(gl)FER_ |
| DDX3X | Ubiquitylation | K347 | -0.406 | 0.360 | _GK(gl)IGLDFCK_ |
| DDX3X | Ubiquitylation | K503 | -0.796 | _SGK(gl)SPILVATAVAAR_ | |
| DDX3X | Phosphorylation | S602 | -0.349 | _S(ph)SRFSGGFGAR_ | |
| DDX3X | Phosphorylation | S603 | -0.330 | _SS(ph)RFSGGFGAR_ | |
| DDX3X | Phosphorylation | S606 | -0.248 | -0.447 | _FS(ph)GGFGAR_ |
| EIF4A3 | Phosphorylation | S10 | 1.817 | _(ac)ATTATM(ox)ATS(ph)GSARK_ | |
| EIF4A3 | Phosphorylation | S12 | -0.433 | 0.298 | _(ac)ATTATMATSGS(ph)AR_ |
| EIF4A3 | Phosphorylation | T163 | 0.454 | _KLDYGQHVVAGT(ph)PGR_ | |
| EIF4A3 | Ubiquitylation | K314 | 0.119 | _EANFTVSSMHGDMPQK(gl)ER_ | |
| EIF4A3 | Ubiquitylation | K321 | 0.578 | 0.367 | _ESIMK(gl)EFR_ |
| EIF4A3 | Ubiquitylation | K374 | 0.958 | _K(gl)GVAINFVK_ | |
| HNRNPDL | Ubiquitylation | K76 | 2.391 | 1.465 | _LAGGAAIK(gl)GGR_ |
| HNRNPDL | Ubiquitylation | K180 | -0.288 | _FGEVVDCTIK(gl)TDPVTGR_ | |
| HNRNPDL | Ubiquitylation | K209 | 0.789 | _VLELK(gl)EHK_ | |
| HNRNPDL | Ubiquitylation | K302 | 0.792 | 0.269 | _YHQIGSGK(gl)CEIK_ |
| HNRNPDL | Ubiquitylation | K306 | 0.186 | 0.500 | _CEIK(gl)VAQPK_ |
| KHDRBS2 | Ubiquitylation | K165 | -0.612 | 0.332 | _VLIPVK(gl)QYPK_ |
| KHDRBS2 | Ubiquitylation | K169 | -0.739 | 0.728 | _QYPK(gl)FNFVGK_ |
| PABPC1 | Ubiquitylation | K78 | -0.883 | 0.807 | _ALDTMNFDVIK(gl)GKPVR_ |
| PABPC1 | Ubiquitylation | K95 | -0.105 | 0.553 | _K(gl)SGVGNIFIK_ |
| PABPC1 | Ubiquitylation | K104 | -0.977 | -0.336 | _SGVGNIFIK(gl)NLDK_ |
| PABPC1 | Ubiquitylation | K108 | -0.071 | 0.530 | _NLDK(gl)SIDNK_ |
| PABPC1 | Ubiquitylation | K138 | -0.960 | _VVCDENGSK(gl)GYGFVHFETQEAAER_ | |
| PABPC1 | Ubiquitylation | K157 | -0.582 | _AIEK(gl)MNGMLLNDRK_ | |
| PABPC1 | Ubiquitylation | K188 | -0.826 | -0.017 | _AK(gl)EFTNVYIK_ |
| PABPC1 | Ubiquitylation | K213 | -0.170 | _DLFGK(gl)FGPALSVK_ | |
| PABPC1 | Ubiquitylation | K231 | 0.080 | _SK(gl)GFGFVSFER_ | |
| PABPC1 | Ubiquitylation | K259 | -0.125 | _ELNGK(gl)QIYVGR_ | |
| PABPC1 | Ubiquitylation | K279 | -0.143 | 0.326 | _K(gl)FEQMK(gl)QDR_ |
| PABPC1 | Ubiquitylation | K284 | -0.108 | 0.322 | _K(gl)FEQMK(gl)QDR_ |
| PABPC1 | Ubiquitylation | K312 | 0.122 | _K(gl)EFSPFGTITSAK_ | |
| PABPC1 | Ubiquitylation | K361 | -0.142 | _IVATK(gl)PLYVALAQR_ | |
| PABPC1 | Ubiquitylation | K512 | -0.640 | 0.085 | _TVPQYK(gl)YAAGVR_ |
| PABPC4 | Ubiquitylation | K78 | -1.247 | _ALDTMNFDVIK(gl)GKPIR_ | |
| PABPC4 | Ubiquitylation | K95 | -0.387 | 0.662 | _K(gl)SGVGNVFIK_ |
| PABPC4 | Ubiquitylation | K104 | -1.334 | _SGVGNVFIK(gl)NLDK_ | |
| PABPC4 | Ubiquitylation | K108 | -0.071 | 0.530 | _NLDK(gl)SIDNK_ |
| PABPC4 | Ubiquitylation | K186 | -0.875 | -0.344 | _EAELGAK(gl)AK_ |
| PABPC4 | Ubiquitylation | K188 | -0.826 | -0.017 | _AK(gl)EFTNVYIK_ |
| PABPC4 | Ubiquitylation | K279 | 0.039 | 0.151 | _K(gl)FEQLKQER_ |
| PABPC4 | Ubiquitylation | K284 | -0.160 | 0.349 | _FEQLK(gl)QER_ |
| PABPC4 | Ubiquitylation | K309 | 0.526 | _NLDDTIDDEK(gl)LRK_ | |
| PABPC4 | Ubiquitylation | K312 | -0.971 | _K(gl)EFSPFGSITSAK_ | |
| PABPC4 | Ubiquitylation | K361 | -0.217 | _IVGSK(gl)PLYVALAQR_ | |
| PABPC4 | Ubiquitylation | K375 | 0.739 | _K(gl)AHLTNQYMQR_ | |
| PABPC5 | Ubiquitylation | K78 | -0.883 | 0.807 | _ALDTMNFDVIK(gl)GKPVR_ |
| PABPC5 | Ubiquitylation | K95 | -0.105 | 0.553 | _K(gl)SGVGNIFIK_ |
| PABPC5 | Ubiquitylation | K104 | -0.977 | -0.336 | _SGVGNIFIK(gl)NLDK_ |
| PABPC5 | Ubiquitylation | K108 | -0.071 | 0.530 | _NLDK(gl)SIDNK_ |
| PABPC5 | Ubiquitylation | K138 | -0.960 | _VVCDENGSK(gl)GYGFVHFETQEAAER_ | |
| PABPC5 | Ubiquitylation | K157 | -0.582 | _AIEK(gl)MNGMLLNDRK_ | |
| PABPC5 | Ubiquitylation | K188 | -0.826 | -0.017 | _AK(gl)EFTNVYIK_ |
| PABPC5 | Ubiquitylation | K213 | -0.170 | _DLFGK(gl)FGPALSVK_ | |
| PABPC5 | Ubiquitylation | K231 | 0.080 | _SK(gl)GFGFVSFER_ | |
| PABPC5 | Ubiquitylation | K259 | -0.125 | _ELNGK(gl)QIYVGR_ | |
| PABPC5 | Ubiquitylation | K279 | -0.143 | 0.326 | _K(gl)FEQMK(gl)QDR_ |
| PABPC5 | Ubiquitylation | K284 | -0.108 | 0.322 | _K(gl)FEQMK(gl)QDR_ |
| PABPC5 | Ubiquitylation | K312 | 0.122 | _K(gl)EFSPFGTITSAK_ | |
| PABPC5 | Ubiquitylation | K361 | -0.142 | _IVATK(gl)PLYVALAQR_ | |
| PABPC5 | Ubiquitylation | K512 | -0.640 | 0.085 | _TVPQYK(gl)YAAGVR_ |
| RBPMS | Ubiquitylation | K60 | -0.903 | -0.103 | _LTSK(gl)QPVGFVSFDSR_ |
| SYNCRIP | Ubiquitylation | K103 | 0.732 | 0.774 | _SAFLCGVMK(gl)TYR_ |
| SYNCRIP | Ubiquitylation | K111 | -1.305 | _QGTK(gl)VADSSKGPDEAK_ | |
| SYNCRIP | Ubiquitylation | K123 | 1.402 | _VADSSKGPDEAK(gl)IK_ | |
| SYNCRIP | Ubiquitylation | K221 | 0.280 | 1.455 | _EAAQEAVK(gl)LYNNHEIR_ |
| SYNCRIP | Ubiquitylation | K313 | 1.171 | 0.697 | _LMSGK(gl)VK_ |
| SYNCRIP | Ubiquitylation | K315 | -0.279 | 1.412 | _LMSGKVK(gl)_ |
| SYNCRIP | Ubiquitylation | K363 | -0.725 | -0.190 | _AFSQFGK(gl)LER_ |
| TIA1 | Ubiquitylation | K91 | 0.902 | _VNWATTPSSQKK(gl)_ |
.
© Copyright Svejstrup Laboratory 2015