RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
PDGFA	1	0.190	-0.340		-2.109	1.885
TYMP	0	0.510	-0.670					-4.772
RABEP1	0	1.320	-1.050
BMP7	0
JAG1	0	-0.260	0.070
GPI	0	0.140	-0.230	-0.881			0.978	0.914
GPI	0	0.140	-0.230
TGFB1	0	-0.550	1.050
CSPG5	0	-0.690	0.310
TGFB3	0	0.900	-0.540
GFER	0	-0.460	0.150
FGF13	0	1.100	-1.060
HDGF	0	-0.810	0.160
HDGF	0	-0.810	0.160
BMP6	0	1.970	-0.630
FBRS	0	1.380	-0.490
FBRS	0	1.380	-0.490
CD320	0	-1.350	1.900
RABEP2	0	-1.310	1.980
JAG2	0	-0.170	0.020
GMFB	0	-0.640	1.110

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
BMP6	Ubiquitylation	K409		-1.025	_VSSASDYNSSELK(gl)TACR_
BMP7	Ubiquitylation	K178		-0.107	_IYK(gl)DYIR_
CD320	Ubiquitylation	K278	-0.533	-0.267	_ESLLLSEQK(gl)TSLP_
CSPG5	Ubiquitylation	K531	0.331		_SCLK(gl)EEESFNIQNSMSPK_
FBRS	Phosphorylation	S177	0.640	0.272	_VS(ph)PFGLR_
FBRS	Phosphorylation	T428		-1.042	_T(ph)PPGALLGAPPPLVPAPR_
FBRS	Phosphorylation	S447	-1.458	-1.873	_PS(ph)SPPRGPGPAR_
FBRS	Phosphorylation	S448	-1.544	-0.923	_PSS(ph)PPRGPGPAR_
FGF13	Ubiquitylation	K57	-0.429	0.063	_AK(gl)CHEIFCCPLK_
FGF13	Phosphorylation	S224	0.090	0.488	_VAMYKEPS(ph)LHDLTEFSR_
GFER	Phosphorylation	S59		-0.603	_DAAASASTPAQAPTSDS(ph)PVAEDASR_
GMFB	Ubiquitylation	K110		-1.081	_NK(gl)LVQTAELTK_
GPI	Ubiquitylation	K12	0.115	0.544	_DPQFQK(gl)LQQWYR_
GPI	Ubiquitylation	K73	0.646	1.187	_MLVDLAK(gl)SR_
GPI	Ubiquitylation	K89	-0.366	1.232	_MFNGEK(gl)INYTEGR_
GPI	Phosphorylation	S107	-0.341	0.159	_S(ph)NTPILVDGKDVM(ox)PEVNK_
GPI	Phosphorylation	T109	0.024	-0.027	_SNT(ph)PILVDGK_
GPI	Ubiquitylation	K116	0.504		_SNTPILVDGK(gl)DVMPEVNK_
GPI	Ubiquitylation	K130	0.931	1.163	_MK(gl)SFCQR_
GPI	Ubiquitylation	K142	0.922	1.123	_SGDWK(gl)GYTGK_
GPI	Ubiquitylation	K234	-0.228	0.467	_EWFLQAAK(gl)DPSAVAK_
GPI	Ubiquitylation	K241	0.187	0.264	_DPSAVAK(gl)HFVALSTNTTK_
GPI	Ubiquitylation	K362		0.882	_FAAYFQQGDMESNGK(gl)YITK_
GPI	Ubiquitylation	K366	0.484	0.754	_YITK(gl)SGTR_
GPI	Ubiquitylation	K447	0.643	0.199	_STEEARK(gl)ELQAAGK_
GPI	Ubiquitylation	K454	-0.613	-0.505	_ELQAAGK(gl)SPEDLER_
HDGF	Ubiquitylation	K11	0.744		_EYK(gl)CGDLVFAK_
HDGF	Ubiquitylation	K39	0.518		_IDEMPEAAVK(gl)STANK_
HDGF	Phosphorylation	S148	0.175	0.116	_KGNAEGS(ph)SDEEGKLVIDEPAK_
HDGF	Phosphorylation	S149	0.156	-0.009	_GNAEGSS(ph)DEEGKLVIDEPAKEK_
HDGF	Phosphorylation	S181	0.232	0.201	_RAGDLLEDS(ph)PK_
JAG1	Ubiquitylation	K1142	-0.783		_HGANTVPIKDYENK(gl)_
JAG2	Ubiquitylation	K76		1.283	_VCLK(gl)EYQAK_
JAG2	Phosphorylation	T1155	-0.335	-0.737	_NFT(ph)PPPR_
JAG2	Ubiquitylation	K1200	0.117		_FLSHK(gl)FTK_
RABEP1	Ubiquitylation	K107	-0.436	0.507	_QEAIDEVK(gl)R_
RABEP1	Phosphorylation	S374	-0.114	-0.032	_GS(ph)VHSLDAGLLLPSGDPFSK_
RABEP1	Phosphorylation	S377	-0.376	-0.063	_GSVHS(ph)LDAGLLLPSGDPFSK_
RABEP1	Phosphorylation	S407	1.036	0.844	_AQS(ph)TDSLGTSGSLQSK_
RABEP1	Phosphorylation	S410	1.127	0.971	_RAQSTDS(ph)LGTSGSLQSK_
RABEP2	Ubiquitylation	K105	0.037		_DSISSYEAQITALK(gl)QER_
TGFB1	Ubiquitylation	K50		-0.557	_GQILSK(gl)LR_
TGFB3	Ubiquitylation	K50		-0.557	_GQILSK(gl)LR_